Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:89316153-90706210

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489 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
hsh 3 87263147 to 90359778 3096631 heritable phenotypic marker hind shaker
Efna3 3 89313899 to 89322960 9061 - protein coding gene ephrin A3
Gm15998 3 89315439 to 89318907 3468 + antisense lncRNA gene predicted gene 15998
Cpgi13421 3 89316432 to 89316834 402 CpG island CpG island 13421
Cpgi13422 3 89319113 to 89323690 4577 CpG island CpG island 13422
Tssr34113 3 89322860 to 89322872 12 - TSS region transcription start site region 34113
Tssr34114 3 89322883 to 89322946 63 - TSS region transcription start site region 34114
Gm34118 3 89325903 to 89331168 5265 - lncRNA gene predicted gene, 34118
Efna4 3 89333393 to 89338028 4635 - protein coding gene ephrin A4
Cpgi13423 3 89337570 to 89338221 651 CpG island CpG island 13423
4731419I09Rik 3 89337850 to 89347831 9981 + antisense lncRNA gene RIKEN cDNA 4731419I09 gene
Tssr34115 3 89337963 to 89337979 16 - TSS region transcription start site region 34115
Tssr34116 3 89338005 to 89338066 61 - TSS region transcription start site region 34116
Tssr30091 3 89339640 to 89339649 9 + TSS region transcription start site region 30091
Adam15 3 89339640 to 89350028 10388 - protein coding gene a disintegrin and metallopeptidase domain 15 (metargidin)
Tssr34117 3 89340140 to 89340185 45 - TSS region transcription start site region 34117
Tssr34118 3 89340435 to 89340477 42 - TSS region transcription start site region 34118
Tssr34119 3 89342315 to 89342365 50 - TSS region transcription start site region 34119
Cpgi13424 3 89349110 to 89350739 1629 CpG island CpG island 13424
Tssr34120 3 89349939 to 89349959 20 - TSS region transcription start site region 34120
Tssr34121 3 89349968 to 89350001 33 - TSS region transcription start site region 34121
Dcst1 3 89350219 to 89365253 15034 - protein coding gene DC-STAMP domain containing 1
Gm10702 3 89353629 to 89354898 1269 + pseudogene predicted gene 10702
Tssr34122 3 89355559 to 89355584 25 - TSS region transcription start site region 34122
Dcst2 3 89361975 to 89377549 15574 + protein coding gene DC-STAMP domain containing 2
Tssr34123 3 89365191 to 89365194 3 - TSS region transcription start site region 34123
Tssr34124 3 89365233 to 89365244 11 - TSS region transcription start site region 34124
Tssr30092 3 89365305 to 89365355 50 + TSS region transcription start site region 30092
Tssr30093 3 89366277 to 89366292 15 + TSS region transcription start site region 30093
Tssr30094 3 89367512 to 89367591 79 + TSS region transcription start site region 30094
Tssr30095 3 89367616 to 89367622 6 + TSS region transcription start site region 30095
Zbtb7b 3 89377644 to 89394776 17132 - protein coding gene zinc finger and BTB domain containing 7B
Cpgi13425 3 89378446 to 89378772 326 CpG island CpG island 13425
Cpgi13426 3 89379709 to 89379935 226 CpG island CpG island 13426
Tssr34125 3 89382929 to 89382937 8 - TSS region transcription start site region 34125
Tssr34126 3 89382947 to 89382960 13 - TSS region transcription start site region 34126
Tssr34127 3 89382982 to 89382990 8 - TSS region transcription start site region 34127
Tssr34128 3 89387082 to 89387100 18 - TSS region transcription start site region 34128
Tssr34129 3 89387132 to 89387148 16 - TSS region transcription start site region 34129
Tssr34130 3 89387312 to 89387323 11 - TSS region transcription start site region 34130
Tssr34131 3 89387343 to 89387354 11 - TSS region transcription start site region 34131
Tssr34132 3 89387880 to 89387902 22 - TSS region transcription start site region 34132
Tssr30096 3 89389329 to 89389334 5 + TSS region transcription start site region 30096
Tssr30097 3 89391824 to 89391870 46 + TSS region transcription start site region 30097
Gm15417 3 89391864 to 89398779 6915 + antisense lncRNA gene predicted gene 15417
Cpgi13427 3 89392022 to 89392543 521 CpG island CpG island 13427
Tssr30098 3 89392175 to 89392208 33 + TSS region transcription start site region 30098
Tssr30099 3 89392237 to 89392251 14 + TSS region transcription start site region 30099
Cpgi13428 3 89392892 to 89393253 361 CpG island CpG island 13428
Tssr34133 3 89393135 to 89393192 57 - TSS region transcription start site region 34133
Tssr34134 3 89393294 to 89393336 42 - TSS region transcription start site region 34134
Tssr34135 3 89393629 to 89393684 55 - TSS region transcription start site region 34135
Cpgi13429 3 89393672 to 89394716 1044 CpG island CpG island 13429
Tssr30100 3 89393859 to 89393864 5 + TSS region transcription start site region 30100
Tssr30101 3 89394268 to 89394321 53 + TSS region transcription start site region 30101
Tssr30102 3 89395709 to 89395722 13 + TSS region transcription start site region 30102
Cpgi13430 3 89396039 to 89396590 551 CpG island CpG island 13430
Lenep 3 89401896 to 89402650 754 - protein coding gene lens epithelial protein
Tssr34136 3 89402520 to 89402527 7 - TSS region transcription start site region 34136
Tssr940 3 89402588 to 89402589 1 - TSS region transcription start site region 940
Tssr941 3 89402597 to 89402609 12 - TSS region transcription start site region 941
Tssr34137 3 89402650 to 89402669 19 - TSS region transcription start site region 34137
Flad1 3 89402673 to 89411863 9190 - protein coding gene flavin adenine dinucleotide synthetase 1
Tssr34138 3 89411840 to 89411894 54 - TSS region transcription start site region 34138
Cks1b 3 89415472 to 89418291 2819 - protein coding gene CDC28 protein kinase 1b
Cpgi13431 3 89418038 to 89418852 814 CpG island CpG island 13431
Tssr34139 3 89418255 to 89418286 31 - TSS region transcription start site region 34139
Tssr34140 3 89418287 to 89418316 29 - TSS region transcription start site region 34140
Shc1 3 89418443 to 89430027 11584 + protein coding gene src homology 2 domain-containing transforming protein C1
Tssr30103 3 89418546 to 89418572 26 + TSS region transcription start site region 30103
Tssr30104 3 89418615 to 89418630 15 + TSS region transcription start site region 30104
Tssr30105 3 89418632 to 89418654 22 + TSS region transcription start site region 30105
Tssr30106 3 89418656 to 89418675 19 + TSS region transcription start site region 30106
Tssr30107 3 89419178 to 89419193 15 + TSS region transcription start site region 30107
Tssr30108 3 89421619 to 89421636 17 + TSS region transcription start site region 30108
Tssr30109 3 89423385 to 89423397 12 + TSS region transcription start site region 30109
Tssr30110 3 89429589 to 89429612 23 + TSS region transcription start site region 30110
Cpgi13432 3 89430026 to 89430913 887 CpG island CpG island 13432
Pygo2 3 89430214 to 89435128 4914 + protein coding gene pygopus 2
Tssr30111 3 89430273 to 89430289 16 + TSS region transcription start site region 30111
Tssr30112 3 89430395 to 89430500 105 + TSS region transcription start site region 30112
Tssr30113 3 89430536 to 89430543 7 + TSS region transcription start site region 30113
Tssr30114 3 89430581 to 89430597 16 + TSS region transcription start site region 30114
Tssr34141 3 89430742 to 89430752 10 - TSS region transcription start site region 34141
Tssr30115 3 89432470 to 89432495 25 + TSS region transcription start site region 30115
Tssr30116 3 89432899 to 89432933 34 + TSS region transcription start site region 30116
Tssr30117 3 89436699 to 89436734 35 + TSS region transcription start site region 30117
Pbxip1 3 89436706 to 89450952 14246 + protein coding gene pre B cell leukemia transcription factor interacting protein 1
Tssr30118 3 89436736 to 89436761 25 + TSS region transcription start site region 30118
Tssr30119 3 89436879 to 89436892 13 + TSS region transcription start site region 30119
Tssr942 3 89437531 to 89437573 42 + TSS region transcription start site region 942
Tssr30120 3 89450385 to 89450404 19 + TSS region transcription start site region 30120
Pmvk 3 89454541 to 89469009 14468 + protein coding gene phosphomevalonate kinase
Tssr34142 3 89455282 to 89455307 25 - TSS region transcription start site region 34142
Tssr34143 3 89458754 to 89458774 20 - TSS region transcription start site region 34143
Tssr30121 3 89459167 to 89459178 11 + TSS region transcription start site region 30121
Tssr30122 3 89459186 to 89459214 28 + TSS region transcription start site region 30122
Cpgi13433 3 89459186 to 89459588 402 CpG island CpG island 13433
Tssr30123 3 89459276 to 89459289 13 + TSS region transcription start site region 30123
Tssr30124 3 89459297 to 89459321 24 + TSS region transcription start site region 30124
Tssr30125 3 89459325 to 89459360 35 + TSS region transcription start site region 30125
Cpgi13434 3 89485243 to 89485421 178 CpG island CpG island 13434
Cpgi13435 3 89519807 to 89520079 272 CpG island CpG island 13435
Tssr30126 3 89520152 to 89520175 23 + TSS region transcription start site region 30126
Kcnn3 3 89520164 to 89672494 152330 + protein coding gene potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3
Cpgi13436 3 89520570 to 89521061 491 CpG island CpG island 13436
Cpgi13437 3 89522085 to 89522251 166 CpG island CpG island 13437
Tssr30127 3 89586371 to 89586373 2 + TSS region transcription start site region 30127
Tssr34144 3 89655140 to 89655170 30 - TSS region transcription start site region 34144
Tssr30128 3 89662519 to 89662552 33 + TSS region transcription start site region 30128
Tssr30129 3 89662681 to 89662716 35 + TSS region transcription start site region 30129
Tssr30130 3 89662717 to 89662728 11 + TSS region transcription start site region 30130
Tssr34145 3 89667249 to 89667260 11 - TSS region transcription start site region 34145
Tssr34146 3 89667280 to 89667287 7 - TSS region transcription start site region 34146
Tssr34147 3 89683181 to 89683189 8 - TSS region transcription start site region 34147
Cpgi13438 3 89688878 to 89689227 349 CpG island CpG island 13438
Cpgi13439 3 89714925 to 89715786 861 CpG island CpG island 13439
Tssr30131 3 89715016 to 89715084 68 + TSS region transcription start site region 30131
Adar 3 89715022 to 89753446 38424 + protein coding gene adenosine deaminase, RNA-specific
Cpgi13440 3 89730457 to 89730937 480 CpG island CpG island 13440
Tssr34148 3 89730551 to 89730562 11 - TSS region transcription start site region 34148
Tssr30132 3 89730735 to 89730786 51 + TSS region transcription start site region 30132
Tssr34149 3 89732315 to 89732326 11 - TSS region transcription start site region 34149
Tssr30133 3 89735689 to 89735716 27 + TSS region transcription start site region 30133
Tssr30134 3 89735789 to 89735805 16 + TSS region transcription start site region 30134
Chrnb2 3 89753448 to 89764632 11184 - protein coding gene cholinergic receptor, nicotinic, beta polypeptide 2 (neuronal)
Cpgi13441 3 89760679 to 89761386 707 CpG island CpG island 13441
Cpgi13442 3 89764223 to 89764735 512 CpG island CpG island 13442
Tssr34150 3 89764432 to 89764443 11 - TSS region transcription start site region 34150
Tssr34151 3 89764523 to 89764528 5 - TSS region transcription start site region 34151
Tssr34152 3 89764581 to 89764646 65 - TSS region transcription start site region 34152
4632404H12Rik 3 89767511 to 89773240 5729 - lincRNA gene RIKEN cDNA 4632404H12 gene
Cpgi13443 3 89772617 to 89774424 1807 CpG island CpG island 13443
Tssr34153 3 89773221 to 89773279 58 - TSS region transcription start site region 34153
Tssr30135 3 89773343 to 89773394 51 + TSS region transcription start site region 30135
Tssr30136 3 89773562 to 89773642 80 + TSS region transcription start site region 30136
Ube2q1 3 89773616 to 89784000 10384 + protein coding gene ubiquitin-conjugating enzyme E2Q family member 1
Tssr30137 3 89782273 to 89782316 43 + TSS region transcription start site region 30137
Tssr30138 3 89799353 to 89799364 11 + TSS region transcription start site region 30138
Tssr30139 3 89820173 to 89820197 24 + TSS region transcription start site region 30139
Gm8969 3 89820998 to 89821523 525 + pseudogene predicted gene 8969
Cpgi13444 3 89830669 to 89832127 1458 CpG island CpG island 13444
Tssr30140 3 89831352 to 89831384 32 + TSS region transcription start site region 30140
She 3 89831370 to 89858834 27464 + protein coding gene src homology 2 domain-containing transforming protein E
Tssr30141 3 89831395 to 89831406 11 + TSS region transcription start site region 30141
D3Mit341 3 89838121 to 89838245 124 DNA segment DNA Segment, Chr 3 Massachusetts Institute of Technology 341
Tssr30142 3 89864395 to 89864411 16 + TSS region transcription start site region 30142
Il6ra 3 89869324 to 89913196 43872 - protein coding gene interleukin 6 receptor, alpha
Tssr34154 3 89870177 to 89870194 17 - TSS region transcription start site region 34154
Tssr34155 3 89870201 to 89870211 10 - TSS region transcription start site region 34155
Tssr34156 3 89870217 to 89870226 9 - TSS region transcription start site region 34156
Tssr34157 3 89870228 to 89870244 16 - TSS region transcription start site region 34157
Tssr34158 3 89871053 to 89871067 14 - TSS region transcription start site region 34158
Tssr34159 3 89871745 to 89871752 7 - TSS region transcription start site region 34159
Gm46811 3 89872076 to 89890235 18159 + lncRNA gene predicted gene, 46811
Tssr34160 3 89891466 to 89891478 12 - TSS region transcription start site region 34160
Tssr34161 3 89904373 to 89904382 9 - TSS region transcription start site region 34161
Tssr34162 3 89904395 to 89904410 15 - TSS region transcription start site region 34162
Tssr34163 3 89904416 to 89904427 11 - TSS region transcription start site region 34163
Tssr34164 3 89904507 to 89904518 11 - TSS region transcription start site region 34164
Tssr30143 3 89911393 to 89911406 13 + TSS region transcription start site region 30143
Cpgi13445 3 89912618 to 89913519 901 CpG island CpG island 13445
Tssr30144 3 89912892 to 89912898 6 + TSS region transcription start site region 30144
Gm42809 3 89912916 to 89914053 1137 + antisense lncRNA gene predicted gene 42809
Tssr34165 3 89913102 to 89913111 9 - TSS region transcription start site region 34165
Tssr34166 3 89913144 to 89913172 28 - TSS region transcription start site region 34166
Tssr34167 3 89913186 to 89913202 16 - TSS region transcription start site region 34167
Atp8b2 3 89939481 to 89963332 23851 - protein coding gene ATPase, class I, type 8B, member 2
Tssr34168 3 89959118 to 89959130 12 - TSS region transcription start site region 34168
Tssr34169 3 89959146 to 89959156 10 - TSS region transcription start site region 34169
Cpgi13446 3 89960249 to 89960912 663 CpG island CpG island 13446
Tssr34170 3 89960540 to 89960557 17 - TSS region transcription start site region 34170
Tssr34171 3 89960562 to 89960617 55 - TSS region transcription start site region 34171
Cpgi13447 3 89962792 to 89963871 1079 CpG island CpG island 13447
Tssr34172 3 89963273 to 89963286 13 - TSS region transcription start site region 34172
Tssr34173 3 89963304 to 89963355 51 - TSS region transcription start site region 34173
Tssr30145 3 89963428 to 89963462 34 + TSS region transcription start site region 30145
Aqp10-ps 3 89964709 to 89968658 3949 - pseudogene aquaporin 10, pseudogene
Gm24046 3 89967999 to 89968163 164 - snRNA gene predicted gene, 24046
Hax1 3 89995446 to 89998716 3270 - protein coding gene HCLS1 associated X-1
Tssr34174 3 89998243 to 89998251 8 - TSS region transcription start site region 34174
Cpgi13448 3 89998518 to 89998881 363 CpG island CpG island 13448
Tssr34175 3 89998656 to 89998704 48 - TSS region transcription start site region 34175
Gm19710 3 89998760 to 90001325 2565 + lincRNA gene predicted gene, 19710
Ubap2l 3 90000140 to 90052628 52488 - protein coding gene ubiquitin-associated protein 2-like
Tssr34176 3 90000528 to 90000547 19 - TSS region transcription start site region 34176
Tssr34177 3 90000553 to 90000581 28 - TSS region transcription start site region 34177
Tssr34178 3 90000794 to 90000804 10 - TSS region transcription start site region 34178
Tssr30146 3 90000836 to 90000846 10 + TSS region transcription start site region 30146
Tssr34179 3 90002265 to 90002290 25 - TSS region transcription start site region 34179
Tssr34180 3 90009288 to 90009306 18 - TSS region transcription start site region 34180
Gm24608 3 90010595 to 90010730 135 - snoRNA gene predicted gene, 24608
Mir7669 3 90011153 to 90011210 57 - miRNA gene microRNA 7669
Tssr34181 3 90014427 to 90014432 5 - TSS region transcription start site region 34181
Tssr34182 3 90016819 to 90016831 12 - TSS region transcription start site region 34182
Tssr34183 3 90017609 to 90017613 4 - TSS region transcription start site region 34183
Tssr34184 3 90018442 to 90018480 38 - TSS region transcription start site region 34184
Tssr34185 3 90019197 to 90019212 15 - TSS region transcription start site region 34185
Tssr34186 3 90019232 to 90019244 12 - TSS region transcription start site region 34186
Tssr34187 3 90020936 to 90020965 29 - TSS region transcription start site region 34187