Gene symbol | Chromo- some |
Coordinates (bp, mm10) | Size (bp) | Strand | Feature Type | Gene name |
---|---|---|---|---|---|---|
Cia5a | 3 | 1969640 | QTL | collagen induced arthritis QTL 5a | ||
Mtx1 | 3 | 5260 | - | protein coding gene | metaxin 1 | |
Cpgi13410 | 3 | 1118 | CpG island | CpG island 13410 | ||
Tssr34096 | 3 | 14 | - | TSS region | transcription start site region 34096 | |
Tssr34097 | 3 | 43 | - | TSS region | transcription start site region 34097 | |
Tssr34098 | 3 | 9 | - | TSS region | transcription start site region 34098 | |
Tssr30071 | 3 | 11 | + | TSS region | transcription start site region 30071 | |
Thbs3 | 3 | 11657 | + | protein coding gene | thrombospondin 3 | |
Tssr30072 | 3 | 51 | + | TSS region | transcription start site region 30072 | |
Tssr30073 | 3 | 12 | + | TSS region | transcription start site region 30073 | |
Tssr30074 | 3 | 22 | + | TSS region | transcription start site region 30074 | |
Tssr937 | 3 | 39 | + | TSS region | transcription start site region 937 | |
Cpgi13411 | 3 | 774 | CpG island | CpG island 13411 | ||
Mir92b | 3 | 82 | - | miRNA gene | microRNA 92b | |
Tssr34099 | 3 | 3 | - | TSS region | transcription start site region 34099 | |
Cpgi13412 | 3 | 281 | CpG island | CpG island 13412 | ||
Tssr30075 | 3 | 20 | + | TSS region | transcription start site region 30075 | |
Muc1 | 3 | 4324 | + | protein coding gene | mucin 1, transmembrane | |
Tssr30076 | 3 | 17 | + | TSS region | transcription start site region 30076 | |
Tssr30077 | 3 | 53 | + | TSS region | transcription start site region 30077 | |
Tssr30078 | 3 | 13 | + | TSS region | transcription start site region 30078 | |
Tssr30079 | 3 | 14 | + | TSS region | transcription start site region 30079 | |
Tssr30080 | 3 | 10 | + | TSS region | transcription start site region 30080 | |
D3Mit49 | 3 | 127 | DNA segment | DNA segment, Chr 3, Massachusetts Institute of Technology 49 | ||
Lmr11 | 3 | 127 | QTL | leishmaniasis resistance 11 | ||
Lmr11c | 3 | 127 | QTL | leishmaniasis resistance 11c | ||
D3Dcr14 | 3 | 107 | DNA segment | DNA Segment, Chr 3, Derry C. Roopenian 14 | ||
Trim46 | 3 | 11985 | - | protein coding gene | tripartite motif-containing 46 | |
Tssr34100 | 3 | 8 | - | TSS region | transcription start site region 34100 | |
Tssr34101 | 3 | 13 | - | TSS region | transcription start site region 34101 | |
Tssr938 | 3 | 44 | - | TSS region | transcription start site region 938 | |
Tssr34102 | 3 | 35 | - | TSS region | transcription start site region 34102 | |
Tssr34103 | 3 | 36 | - | TSS region | transcription start site region 34103 | |
Tssr30081 | 3 | 49 | + | TSS region | transcription start site region 30081 | |
Tssr30082 | 3 | 27 | + | TSS region | transcription start site region 30082 | |
Tssr34104 | 3 | 26 | - | TSS region | transcription start site region 34104 | |
Tssr34105 | 3 | 34 | - | TSS region | transcription start site region 34105 | |
Tssr939 | 3 | 36 | - | TSS region | transcription start site region 939 | |
Tssr34106 | 3 | 14 | - | TSS region | transcription start site region 34106 | |
Tssr34107 | 3 | 70 | - | TSS region | transcription start site region 34107 | |
Tssr30083 | 3 | 41 | + | TSS region | transcription start site region 30083 | |
Cpgi13413 | 3 | 1041 | CpG island | CpG island 13413 | ||
Tssr30084 | 3 | 26 | + | TSS region | transcription start site region 30084 | |
Krtcap2 | 3 | 3493 | + | protein coding gene | keratinocyte associated protein 2 | |
Tssr30085 | 3 | 96 | + | TSS region | transcription start site region 30085 | |
Cpgi13414 | 3 | 233 | CpG island | CpG island 13414 | ||
Dpm3 | 3 | 7721 | + | protein coding gene | dolichyl-phosphate mannosyltransferase polypeptide 3 | |
Cpgi13415 | 3 | 744 | CpG island | CpG island 13415 | ||
Tssr30086 | 3 | 33 | + | TSS region | transcription start site region 30086 | |
Slc50a1 | 3 | 2324 | - | protein coding gene | solute carrier family 50 (sugar transporter), member 1 | |
Cpgi13416 | 3 | 1003 | CpG island | CpG island 13416 | ||
Tssr34108 | 3 | 7 | - | TSS region | transcription start site region 34108 | |
Tssr34109 | 3 | 62 | - | TSS region | transcription start site region 34109 | |
Efna1 | 3 | 9221 | - | protein coding gene | ephrin A1 | |
Tssr30087 | 3 | 1 | + | TSS region | transcription start site region 30087 | |
Cpgi13417 | 3 | 2178 | CpG island | CpG island 13417 | ||
Tssr34110 | 3 | 11 | - | TSS region | transcription start site region 34110 | |
Tssr34111 | 3 | 25 | - | TSS region | transcription start site region 34111 | |
Tssr34112 | 3 | 14 | - | TSS region | transcription start site region 34112 | |
Gm33845 | 3 | 12359 | - | lncRNA gene | predicted gene, 33845 | |
Tssr30088 | 3 | 11 | + | TSS region | transcription start site region 30088 | |
Cpgi13418 | 3 | 285 | CpG island | CpG island 13418 | ||
Gm22642 | 3 | 251 | + | unclassified non-coding RNA gene | predicted gene, 22642 | |
Tssr30089 | 3 | 17 | + | TSS region | transcription start site region 30089 | |
Tssr30090 | 3 | 11 | + | TSS region | transcription start site region 30090 | |
Gm34014 | 3 | 10987 | + | lncRNA gene | predicted gene, 34014 | |
Cpgi13419 | 3 | 176 | CpG island | CpG island 13419 | ||
Efna3 | 3 | 9061 | - | protein coding gene | ephrin A3 | |
Gm15998 | 3 | 3468 | + | antisense lncRNA gene | predicted gene 15998 | |
Cpgi13420 | 3 | 653 | CpG island | CpG island 13420 | ||
Cpgi13421 | 3 | 402 | CpG island | CpG island 13421 | ||
Cpgi13422 | 3 | 4577 | CpG island | CpG island 13422 | ||
Tssr34113 | 3 | 12 | - | TSS region | transcription start site region 34113 | |
Tssr34114 | 3 | 63 | - | TSS region | transcription start site region 34114 | |
Gm34118 | 3 | 5265 | - | lncRNA gene | predicted gene, 34118 | |
Efna4 | 3 | 4635 | - | protein coding gene | ephrin A4 | |
Cpgi13423 | 3 | 651 | CpG island | CpG island 13423 | ||
4731419I09Rik | 3 | 9981 | + | antisense lncRNA gene | RIKEN cDNA 4731419I09 gene | |
Tssr34115 | 3 | 16 | - | TSS region | transcription start site region 34115 | |
Tssr34116 | 3 | 61 | - | TSS region | transcription start site region 34116 | |
Tssr30091 | 3 | 9 | + | TSS region | transcription start site region 30091 | |
Adam15 | 3 | 10388 | - | protein coding gene | a disintegrin and metallopeptidase domain 15 (metargidin) | |
Tssr34117 | 3 | 45 | - | TSS region | transcription start site region 34117 | |
Tssr34118 | 3 | 42 | - | TSS region | transcription start site region 34118 | |
Tssr34119 | 3 | 50 | - | TSS region | transcription start site region 34119 | |
Cpgi13424 | 3 | 1629 | CpG island | CpG island 13424 | ||
Tssr34120 | 3 | 20 | - | TSS region | transcription start site region 34120 | |
Tssr34121 | 3 | 33 | - | TSS region | transcription start site region 34121 | |
Dcst1 | 3 | 15034 | - | protein coding gene | DC-STAMP domain containing 1 | |
Gm10702 | 3 | 1269 | + | pseudogene | predicted gene 10702 | |
Tssr34122 | 3 | 25 | - | TSS region | transcription start site region 34122 | |
Dcst2 | 3 | 15574 | + | protein coding gene | DC-STAMP domain containing 2 | |
Tssr34123 | 3 | 3 | - | TSS region | transcription start site region 34123 | |
Tssr34124 | 3 | 11 | - | TSS region | transcription start site region 34124 | |
Tssr30092 | 3 | 50 | + | TSS region | transcription start site region 30092 | |
Tssr30093 | 3 | 15 | + | TSS region | transcription start site region 30093 | |
Tssr30094 | 3 | 79 | + | TSS region | transcription start site region 30094 | |
Tssr30095 | 3 | 6 | + | TSS region | transcription start site region 30095 | |
Zbtb7b | 3 | 17132 | - | protein coding gene | zinc finger and BTB domain containing 7B | |
Cpgi13425 | 3 | 326 | CpG island | CpG island 13425 | ||
Cpgi13426 | 3 | 226 | CpG island | CpG island 13426 | ||
Tssr34125 | 3 | 8 | - | TSS region | transcription start site region 34125 | |
Tssr34126 | 3 | 13 | - | TSS region | transcription start site region 34126 | |
Tssr34127 | 3 | 8 | - | TSS region | transcription start site region 34127 | |
Tssr34128 | 3 | 18 | - | TSS region | transcription start site region 34128 | |
Tssr34129 | 3 | 16 | - | TSS region | transcription start site region 34129 | |
Tssr34130 | 3 | 11 | - | TSS region | transcription start site region 34130 | |
Tssr34131 | 3 | 11 | - | TSS region | transcription start site region 34131 | |
Tssr34132 | 3 | 22 | - | TSS region | transcription start site region 34132 | |
Tssr30096 | 3 | 5 | + | TSS region | transcription start site region 30096 | |
Tssr30097 | 3 | 46 | + | TSS region | transcription start site region 30097 | |
Gm15417 | 3 | 6915 | + | antisense lncRNA gene | predicted gene 15417 | |
Cpgi13427 | 3 | 521 | CpG island | CpG island 13427 | ||
Tssr30098 | 3 | 33 | + | TSS region | transcription start site region 30098 | |
Tssr30099 | 3 | 14 | + | TSS region | transcription start site region 30099 | |
Cpgi13428 | 3 | 361 | CpG island | CpG island 13428 | ||
Tssr34133 | 3 | 57 | - | TSS region | transcription start site region 34133 | |
Tssr34134 | 3 | 42 | - | TSS region | transcription start site region 34134 | |
Tssr34135 | 3 | 55 | - | TSS region | transcription start site region 34135 | |
Cpgi13429 | 3 | 1044 | CpG island | CpG island 13429 | ||
Tssr30100 | 3 | 5 | + | TSS region | transcription start site region 30100 | |
Tssr30101 | 3 | 53 | + | TSS region | transcription start site region 30101 | |
Tssr30102 | 3 | 13 | + | TSS region | transcription start site region 30102 | |
Cpgi13430 | 3 | 551 | CpG island | CpG island 13430 | ||
Lenep | 3 | 754 | - | protein coding gene | lens epithelial protein | |
Tssr34136 | 3 | 7 | - | TSS region | transcription start site region 34136 | |
Tssr940 | 3 | 1 | - | TSS region | transcription start site region 940 | |
Tssr941 | 3 | 12 | - | TSS region | transcription start site region 941 | |
Tssr34137 | 3 | 19 | - | TSS region | transcription start site region 34137 | |
Flad1 | 3 | 9190 | - | protein coding gene | flavin adenine dinucleotide synthetase 1 | |
Tssr34138 | 3 | 54 | - | TSS region | transcription start site region 34138 | |
Cks1b | 3 | 2819 | - | protein coding gene | CDC28 protein kinase 1b | |
Cpgi13431 | 3 | 814 | CpG island | CpG island 13431 | ||
Tssr34139 | 3 | 31 | - | TSS region | transcription start site region 34139 | |
Tssr34140 | 3 | 29 | - | TSS region | transcription start site region 34140 | |
Shc1 | 3 | 11584 | + | protein coding gene | src homology 2 domain-containing transforming protein C1 | |
Tssr30103 | 3 | 26 | + | TSS region | transcription start site region 30103 | |
Tssr30104 | 3 | 15 | + | TSS region | transcription start site region 30104 | |
Tssr30105 | 3 | 22 | + | TSS region | transcription start site region 30105 | |
Tssr30106 | 3 | 19 | + | TSS region | transcription start site region 30106 | |
Tssr30107 | 3 | 15 | + | TSS region | transcription start site region 30107 | |
Tssr30108 | 3 | 17 | + | TSS region | transcription start site region 30108 | |
Tssr30109 | 3 | 12 | + | TSS region | transcription start site region 30109 | |
Tssr30110 | 3 | 23 | + | TSS region | transcription start site region 30110 | |
Cpgi13432 | 3 | 887 | CpG island | CpG island 13432 | ||
Pygo2 | 3 | 4914 | + | protein coding gene | pygopus 2 | |
Tssr30111 | 3 | 16 | + | TSS region | transcription start site region 30111 | |
Tssr30112 | 3 | 105 | + | TSS region | transcription start site region 30112 | |
Tssr30113 | 3 | 7 | + | TSS region | transcription start site region 30113 | |
Tssr30114 | 3 | 16 | + | TSS region | transcription start site region 30114 | |
Tssr34141 | 3 | 10 | - | TSS region | transcription start site region 34141 | |
Tssr30115 | 3 | 25 | + | TSS region | transcription start site region 30115 | |
Tssr30116 | 3 | 34 | + | TSS region | transcription start site region 30116 | |
Tssr30117 | 3 | 35 | + | TSS region | transcription start site region 30117 | |
Pbxip1 | 3 | 14246 | + | protein coding gene | pre B cell leukemia transcription factor interacting protein 1 | |
Tssr30118 | 3 | 25 | + | TSS region | transcription start site region 30118 | |
Tssr30119 | 3 | 13 | + | TSS region | transcription start site region 30119 | |
Tssr942 | 3 | 42 | + | TSS region | transcription start site region 942 | |
Tssr30120 | 3 | 19 | + | TSS region | transcription start site region 30120 | |
Pmvk | 3 | 14468 | + | protein coding gene | phosphomevalonate kinase | |
Tssr34142 | 3 | 25 | - | TSS region | transcription start site region 34142 | |
Tssr34143 | 3 | 20 | - | TSS region | transcription start site region 34143 | |
Tssr30121 | 3 | 11 | + | TSS region | transcription start site region 30121 | |
Tssr30122 | 3 | 28 | + | TSS region | transcription start site region 30122 | |
Cpgi13433 | 3 | 402 | CpG island | CpG island 13433 | ||
Tssr30123 | 3 | 13 | + | TSS region | transcription start site region 30123 | |
Tssr30124 | 3 | 24 | + | TSS region | transcription start site region 30124 | |
Tssr30125 | 3 | 35 | + | TSS region | transcription start site region 30125 | |
Cpgi13434 | 3 | 178 | CpG island | CpG island 13434 | ||
Cpgi13435 | 3 | 272 | CpG island | CpG island 13435 | ||
Tssr30126 | 3 | 23 | + | TSS region | transcription start site region 30126 | |
Kcnn3 | 3 | 152330 | + | protein coding gene | potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3 | |
Cpgi13436 | 3 | 491 | CpG island | CpG island 13436 | ||
Cpgi13437 | 3 | 166 | CpG island | CpG island 13437 | ||
Tssr30127 | 3 | 2 | + | TSS region | transcription start site region 30127 | |
Tssr34144 | 3 | 30 | - | TSS region | transcription start site region 34144 | |
Tssr30128 | 3 | 33 | + | TSS region | transcription start site region 30128 | |
Tssr30129 | 3 | 35 | + | TSS region | transcription start site region 30129 | |
Tssr30130 | 3 | 11 | + | TSS region | transcription start site region 30130 | |
Tssr34145 | 3 | 11 | - | TSS region | transcription start site region 34145 | |
Tssr34146 | 3 | 7 | - | TSS region | transcription start site region 34146 | |
Tssr34147 | 3 | 8 | - | TSS region | transcription start site region 34147 | |
Cpgi13438 | 3 | 349 | CpG island | CpG island 13438 | ||
Ctrq2 | 3 | -48514587 | QTL | C. trachomatis resistance QTL 2 |