Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:89148600-89228637

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65 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Hcn3 3 89146775 to 89160230 13455 - protein coding gene hyperpolarization-activated, cyclic nucleotide-gated K+ 3
Cpgi13401 3 89149818 to 89150036 218 CpG island CpG island 13401
Cpgi13402 3 89150332 to 89150486 154 CpG island CpG island 13402
Cpgi13403 3 89152671 to 89152966 295 CpG island CpG island 13403
Cpgi13404 3 89159608 to 89160514 906 CpG island CpG island 13404
Tssr34093 3 89160155 to 89160202 47 - TSS region transcription start site region 34093
Cpgi13405 3 89164602 to 89165354 752 CpG island CpG island 13405
Tssr30043 3 89164790 to 89164863 73 + TSS region transcription start site region 30043
Gm45927 3 89164795 to 89182770 17975 + protein coding gene predicted gene, 45927
Clk2 3 89164795 to 89176921 12126 + protein coding gene CDC-like kinase 2
Tssr30044 3 89167079 to 89167084 5 + TSS region transcription start site region 30044
Cpgi13406 3 89177330 to 89178050 720 CpG island CpG island 13406
Tssr30045 3 89177463 to 89177543 80 + TSS region transcription start site region 30045
Scamp3 3 89177473 to 89182765 5292 + protein coding gene secretory carrier membrane protein 3
Tssr30046 3 89177553 to 89177592 39 + TSS region transcription start site region 30046
Gm16069 3 89180755 to 89182293 1538 - antisense lncRNA gene predicted gene 16069
Cpgi13407 3 89183121 to 89183879 758 CpG island CpG island 13407
Tssr30047 3 89183131 to 89183207 76 + TSS region transcription start site region 30047
Fam189b 3 89183143 to 89189291 6148 + protein coding gene family with sequence similarity 189, member B
Tssr30048 3 89183399 to 89183410 11 + TSS region transcription start site region 30048
Tssr30049 3 89186712 to 89186721 9 + TSS region transcription start site region 30049
Tssr30050 3 89186733 to 89186744 11 + TSS region transcription start site region 30050
Tssr30051 3 89186746 to 89186757 11 + TSS region transcription start site region 30051
Tssr30052 3 89186776 to 89186787 11 + TSS region transcription start site region 30052
Cpgi13408 3 89187147 to 89187607 460 CpG island CpG island 13408
Tssr30053 3 89187363 to 89187375 12 + TSS region transcription start site region 30053
Tssr30054 3 89187390 to 89187409 19 + TSS region transcription start site region 30054
Tssr30055 3 89187431 to 89187457 26 + TSS region transcription start site region 30055
Tssr30056 3 89187475 to 89187488 13 + TSS region transcription start site region 30056
Tssr30057 3 89187819 to 89187830 11 + TSS region transcription start site region 30057
Tssr30058 3 89187870 to 89187896 26 + TSS region transcription start site region 30058
Tssr30059 3 89187921 to 89187965 44 + TSS region transcription start site region 30059
Tssr30060 3 89187974 to 89187997 23 + TSS region transcription start site region 30060
Tssr30061 3 89188320 to 89188328 8 + TSS region transcription start site region 30061
Tssr30062 3 89188348 to 89188366 18 + TSS region transcription start site region 30062
Tssr30063 3 89188405 to 89188410 5 + TSS region transcription start site region 30063
Tssr34094 3 89188600 to 89188637 37 - TSS region transcription start site region 34094
Cpgi13409 3 89196437 to 89196824 387 CpG island CpG island 13409
Gm23269 3 89201167 to 89201273 106 - snRNA gene predicted gene, 23269
Tssr30064 3 89202916 to 89202962 46 + TSS region transcription start site region 30064
Gba 3 89202928 to 89208966 6038 + protein coding gene glucosidase, beta, acid
Tssr30065 3 89202963 to 89202976 13 + TSS region transcription start site region 30065
Tssr30066 3 89202994 to 89203010 16 + TSS region transcription start site region 30066
Tssr30067 3 89203977 to 89203994 17 + TSS region transcription start site region 30067
Tssr30068 3 89204065 to 89204092 27 + TSS region transcription start site region 30068
Tssr30069 3 89204341 to 89204382 41 + TSS region transcription start site region 30069
Mtx1 3 89209081 to 89214341 5260 - protein coding gene metaxin 1
Gm43737 3 89210425 to 89213164 2739 + unclassified gene predicted gene 43737
D3Nds20 3 89211759 to 89211947 188 DNA segment DNA segment, Chr 3, Nuffield Department of Surgery 20
Cpgi13410 3 89213526 to 89214644 1118 CpG island CpG island 13410
Tssr34095 3 89213892 to 89213923 31 - TSS region transcription start site region 34095
Tssr30070 3 89213926 to 89213944 18 + TSS region transcription start site region 30070
Tssr34096 3 89214240 to 89214254 14 - TSS region transcription start site region 34096
Tssr34097 3 89214329 to 89214372 43 - TSS region transcription start site region 34097
Tssr34098 3 89214378 to 89214387 9 - TSS region transcription start site region 34098
Tssr30071 3 89215170 to 89215181 11 + TSS region transcription start site region 30071
Thbs3 3 89215180 to 89226837 11657 + protein coding gene thrombospondin 3
Tssr30072 3 89215192 to 89215243 51 + TSS region transcription start site region 30072
Tssr30073 3 89225072 to 89225084 12 + TSS region transcription start site region 30073
Tssr30074 3 89226174 to 89226196 22 + TSS region transcription start site region 30074
Tssr937 3 89226229 to 89226268 39 + TSS region transcription start site region 937
Cpgi13411 3 89227007 to 89227781 774 CpG island CpG island 13411
Mir92b 3 89227116 to 89227198 82 - miRNA gene microRNA 92b
Tssr34099 3 89227385 to 89227388 3 - TSS region transcription start site region 34099
Cpgi13412 3 89228141 to 89228422 281 CpG island CpG island 13412