Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:89097671-89207966

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65 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm43738 3 89081939 to 89101099 19160 - protein coding gene predicted gene 43738
Fdps 3 89093588 to 89101959 8371 - protein coding gene farnesyl diphosphate synthetase
Gm22935 3 89097910 to 89098013 103 - snRNA gene predicted gene, 22935
Cpgi13398 3 89101497 to 89102249 752 CpG island CpG island 13398
Tssr34090 3 89101858 to 89101898 40 - TSS region transcription start site region 34090
Tssr34091 3 89101907 to 89101969 62 - TSS region transcription start site region 34091
Tssr34092 3 89102017 to 89102020 3 - TSS region transcription start site region 34092
Tssr30035 3 89116707 to 89116711 4 + TSS region transcription start site region 30035
Gm29704 3 89116724 to 89116976 252 + pseudogene predicted gene, 29704
Cpgi13399 3 89132266 to 89132733 467 CpG island CpG island 13399
Tssr30036 3 89136116 to 89136123 7 + TSS region transcription start site region 30036
Pklr 3 89136129 to 89146600 10471 + protein coding gene pyruvate kinase liver and red blood cell
Tssr30037 3 89136133 to 89136183 50 + TSS region transcription start site region 30037
Tssr30038 3 89136573 to 89136593 20 + TSS region transcription start site region 30038
Tssr30039 3 89136608 to 89136629 21 + TSS region transcription start site region 30039
Tssr30040 3 89140213 to 89140230 17 + TSS region transcription start site region 30040
Tssr30041 3 89146071 to 89146075 4 + TSS region transcription start site region 30041
Tssr30042 3 89146145 to 89146154 9 + TSS region transcription start site region 30042
Hcn3 3 89146775 to 89160230 13455 - protein coding gene hyperpolarization-activated, cyclic nucleotide-gated K+ 3
Cpgi13400 3 89147740 to 89148348 608 CpG island CpG island 13400
Cpgi13401 3 89149818 to 89150036 218 CpG island CpG island 13401
Cpgi13402 3 89150332 to 89150486 154 CpG island CpG island 13402
Cpgi13403 3 89152671 to 89152966 295 CpG island CpG island 13403
Cpgi13404 3 89159608 to 89160514 906 CpG island CpG island 13404
Tssr34093 3 89160155 to 89160202 47 - TSS region transcription start site region 34093
Cpgi13405 3 89164602 to 89165354 752 CpG island CpG island 13405
Tssr30043 3 89164790 to 89164863 73 + TSS region transcription start site region 30043
Gm45927 3 89164795 to 89182770 17975 + protein coding gene predicted gene, 45927
Clk2 3 89164795 to 89176921 12126 + protein coding gene CDC-like kinase 2
Tssr30044 3 89167079 to 89167084 5 + TSS region transcription start site region 30044
Cpgi13406 3 89177330 to 89178050 720 CpG island CpG island 13406
Tssr30045 3 89177463 to 89177543 80 + TSS region transcription start site region 30045
Scamp3 3 89177473 to 89182765 5292 + protein coding gene secretory carrier membrane protein 3
Tssr30046 3 89177553 to 89177592 39 + TSS region transcription start site region 30046
Gm16069 3 89180755 to 89182293 1538 - antisense lncRNA gene predicted gene 16069
Cpgi13407 3 89183121 to 89183879 758 CpG island CpG island 13407
Tssr30047 3 89183131 to 89183207 76 + TSS region transcription start site region 30047
Fam189b 3 89183143 to 89189291 6148 + protein coding gene family with sequence similarity 189, member B
Tssr30048 3 89183399 to 89183410 11 + TSS region transcription start site region 30048
Tssr30049 3 89186712 to 89186721 9 + TSS region transcription start site region 30049
Tssr30050 3 89186733 to 89186744 11 + TSS region transcription start site region 30050
Tssr30051 3 89186746 to 89186757 11 + TSS region transcription start site region 30051
Tssr30052 3 89186776 to 89186787 11 + TSS region transcription start site region 30052
Cpgi13408 3 89187147 to 89187607 460 CpG island CpG island 13408
Tssr30053 3 89187363 to 89187375 12 + TSS region transcription start site region 30053
Tssr30054 3 89187390 to 89187409 19 + TSS region transcription start site region 30054
Tssr30055 3 89187431 to 89187457 26 + TSS region transcription start site region 30055
Tssr30056 3 89187475 to 89187488 13 + TSS region transcription start site region 30056
Tssr30057 3 89187819 to 89187830 11 + TSS region transcription start site region 30057
Tssr30058 3 89187870 to 89187896 26 + TSS region transcription start site region 30058
Tssr30059 3 89187921 to 89187965 44 + TSS region transcription start site region 30059
Tssr30060 3 89187974 to 89187997 23 + TSS region transcription start site region 30060
Tssr30061 3 89188320 to 89188328 8 + TSS region transcription start site region 30061
Tssr30062 3 89188348 to 89188366 18 + TSS region transcription start site region 30062
Tssr30063 3 89188405 to 89188410 5 + TSS region transcription start site region 30063
Tssr34094 3 89188600 to 89188637 37 - TSS region transcription start site region 34094
Cpgi13409 3 89196437 to 89196824 387 CpG island CpG island 13409
Gm23269 3 89201167 to 89201273 106 - snRNA gene predicted gene, 23269
Tssr30064 3 89202916 to 89202962 46 + TSS region transcription start site region 30064
Gba 3 89202928 to 89208966 6038 + protein coding gene glucosidase, beta, acid
Tssr30065 3 89202963 to 89202976 13 + TSS region transcription start site region 30065
Tssr30066 3 89202994 to 89203010 16 + TSS region transcription start site region 30066
Tssr30067 3 89203977 to 89203994 17 + TSS region transcription start site region 30067
Tssr30068 3 89204065 to 89204092 27 + TSS region transcription start site region 30068
Tssr30069 3 89204341 to 89204382 41 + TSS region transcription start site region 30069