Gene symbol | Chromo- some |
Coordinates (bp, mm10) | Size (bp) | Strand | Feature Type | Gene name |
---|---|---|---|---|---|---|
Cia5a | 3 | 1969640 | QTL | collagen induced arthritis QTL 5a | ||
Ash1l | 3 | 128753 | + | protein coding gene | ASH1 like histone lysine methyltransferase | |
D3Mit282 | 3 | 121 | DNA segment | DNA segment, Chr 3, Massachusetts Institute of Technology 282 | ||
Tssr30033 | 3 | 37 | + | TSS region | transcription start site region 30033 | |
Gm24403 | 3 | 129 | - | snoRNA gene | predicted gene, 24403 | |
Gm43738 | 3 | 19160 | - | protein coding gene | predicted gene 43738 | |
Rusc1 | 3 | 9330 | - | protein coding gene | RUN and SH3 domain containing 1 | |
Cpgi13395 | 3 | 166 | CpG island | CpG island 13395 | ||
Tssr30034 | 3 | 36 | + | TSS region | transcription start site region 30034 | |
Cpgi13396 | 3 | 2092 | CpG island | CpG island 13396 | ||
Tssr34080 | 3 | 9 | - | TSS region | transcription start site region 34080 | |
Tssr34081 | 3 | 17 | - | TSS region | transcription start site region 34081 | |
Tssr34082 | 3 | 11 | - | TSS region | transcription start site region 34082 | |
Tssr34083 | 3 | 16 | - | TSS region | transcription start site region 34083 | |
Tssr34084 | 3 | 53 | - | TSS region | transcription start site region 34084 | |
Tssr34085 | 3 | 40 | - | TSS region | transcription start site region 34085 | |
Cpgi13397 | 3 | 469 | CpG island | CpG island 13397 | ||
Tssr34086 | 3 | 71 | - | TSS region | transcription start site region 34086 | |
Tssr34087 | 3 | 9 | - | TSS region | transcription start site region 34087 | |
Tssr34088 | 3 | 3 | - | TSS region | transcription start site region 34088 | |
Fdps | 3 | 8371 | - | protein coding gene | farnesyl diphosphate synthetase | |
Tssr34089 | 3 | 4 | - | TSS region | transcription start site region 34089 | |
Gm22935 | 3 | 103 | - | snRNA gene | predicted gene, 22935 | |
Cpgi13398 | 3 | 752 | CpG island | CpG island 13398 | ||
Tssr34090 | 3 | 40 | - | TSS region | transcription start site region 34090 | |
Tssr34091 | 3 | 62 | - | TSS region | transcription start site region 34091 | |
Tssr34092 | 3 | 3 | - | TSS region | transcription start site region 34092 | |
Tssr30035 | 3 | 4 | + | TSS region | transcription start site region 30035 | |
Gm29704 | 3 | 252 | + | pseudogene | predicted gene, 29704 | |
Cpgi13399 | 3 | 467 | CpG island | CpG island 13399 | ||
Tssr30036 | 3 | 7 | + | TSS region | transcription start site region 30036 | |
Pklr | 3 | 10471 | + | protein coding gene | pyruvate kinase liver and red blood cell | |
Tssr30037 | 3 | 50 | + | TSS region | transcription start site region 30037 | |
Tssr30038 | 3 | 20 | + | TSS region | transcription start site region 30038 | |
Tssr30039 | 3 | 21 | + | TSS region | transcription start site region 30039 | |
Tssr30040 | 3 | 17 | + | TSS region | transcription start site region 30040 | |
Tssr30041 | 3 | 4 | + | TSS region | transcription start site region 30041 | |
Tssr30042 | 3 | 9 | + | TSS region | transcription start site region 30042 | |
Hcn3 | 3 | 13455 | - | protein coding gene | hyperpolarization-activated, cyclic nucleotide-gated K+ 3 | |
Cpgi13400 | 3 | 608 | CpG island | CpG island 13400 | ||
Cpgi13401 | 3 | 218 | CpG island | CpG island 13401 | ||
Cpgi13402 | 3 | 154 | CpG island | CpG island 13402 | ||
Cpgi13403 | 3 | 295 | CpG island | CpG island 13403 | ||
Cpgi13404 | 3 | 906 | CpG island | CpG island 13404 | ||
Tssr34093 | 3 | 47 | - | TSS region | transcription start site region 34093 | |
Cpgi13405 | 3 | 752 | CpG island | CpG island 13405 | ||
Tssr30043 | 3 | 73 | + | TSS region | transcription start site region 30043 | |
Clk2 | 3 | 12126 | + | protein coding gene | CDC-like kinase 2 | |
Gm45927 | 3 | 17975 | + | protein coding gene | predicted gene, 45927 | |
Tssr30044 | 3 | 5 | + | TSS region | transcription start site region 30044 | |
Cpgi13406 | 3 | 720 | CpG island | CpG island 13406 | ||
Tssr30045 | 3 | 80 | + | TSS region | transcription start site region 30045 | |
Scamp3 | 3 | 5292 | + | protein coding gene | secretory carrier membrane protein 3 | |
Tssr30046 | 3 | 39 | + | TSS region | transcription start site region 30046 | |
Gm16069 | 3 | 1538 | - | antisense lncRNA gene | predicted gene 16069 | |
Cpgi13407 | 3 | 758 | CpG island | CpG island 13407 | ||
Tssr30047 | 3 | 76 | + | TSS region | transcription start site region 30047 | |
Fam189b | 3 | 6148 | + | protein coding gene | family with sequence similarity 189, member B | |
Tssr30048 | 3 | 11 | + | TSS region | transcription start site region 30048 | |
Tssr30049 | 3 | 9 | + | TSS region | transcription start site region 30049 | |
Tssr30050 | 3 | 11 | + | TSS region | transcription start site region 30050 | |
Tssr30051 | 3 | 11 | + | TSS region | transcription start site region 30051 | |
Tssr30052 | 3 | 11 | + | TSS region | transcription start site region 30052 | |
Cpgi13408 | 3 | 460 | CpG island | CpG island 13408 | ||
Tssr30053 | 3 | 12 | + | TSS region | transcription start site region 30053 | |
Tssr30054 | 3 | 19 | + | TSS region | transcription start site region 30054 | |
Tssr30055 | 3 | 26 | + | TSS region | transcription start site region 30055 | |
Tssr30056 | 3 | 13 | + | TSS region | transcription start site region 30056 | |
Tssr30057 | 3 | 11 | + | TSS region | transcription start site region 30057 | |
Tssr30058 | 3 | 26 | + | TSS region | transcription start site region 30058 | |
Tssr30059 | 3 | 44 | + | TSS region | transcription start site region 30059 | |
Tssr30060 | 3 | 23 | + | TSS region | transcription start site region 30060 | |
Tssr30061 | 3 | 8 | + | TSS region | transcription start site region 30061 | |
Tssr30062 | 3 | 18 | + | TSS region | transcription start site region 30062 | |
Tssr30063 | 3 | 5 | + | TSS region | transcription start site region 30063 | |
Tssr34094 | 3 | 37 | - | TSS region | transcription start site region 34094 | |
Cpgi13409 | 3 | 387 | CpG island | CpG island 13409 | ||
Gm23269 | 3 | 106 | - | snRNA gene | predicted gene, 23269 | |
Tssr30064 | 3 | 46 | + | TSS region | transcription start site region 30064 | |
Gba | 3 | 6038 | + | protein coding gene | glucosidase, beta, acid | |
Tssr30065 | 3 | 13 | + | TSS region | transcription start site region 30065 | |
Tssr30066 | 3 | 16 | + | TSS region | transcription start site region 30066 | |
Tssr30067 | 3 | 17 | + | TSS region | transcription start site region 30067 | |
Tssr30068 | 3 | 27 | + | TSS region | transcription start site region 30068 | |
Tssr30069 | 3 | 41 | + | TSS region | transcription start site region 30069 | |
Mtx1 | 3 | 5260 | - | protein coding gene | metaxin 1 | |
Gm43737 | 3 | 2739 | + | unclassified gene | predicted gene 43737 | |
D3Nds20 | 3 | 188 | DNA segment | DNA segment, Chr 3, Nuffield Department of Surgery 20 | ||
Cpgi13410 | 3 | 1118 | CpG island | CpG island 13410 | ||
Tssr34095 | 3 | 31 | - | TSS region | transcription start site region 34095 | |
Tssr30070 | 3 | 18 | + | TSS region | transcription start site region 30070 | |
Tssr34096 | 3 | 14 | - | TSS region | transcription start site region 34096 | |
Tssr34097 | 3 | 43 | - | TSS region | transcription start site region 34097 | |
Tssr34098 | 3 | 9 | - | TSS region | transcription start site region 34098 | |
Tssr30071 | 3 | 11 | + | TSS region | transcription start site region 30071 | |
Thbs3 | 3 | 11657 | + | protein coding gene | thrombospondin 3 | |
Tssr30072 | 3 | 51 | + | TSS region | transcription start site region 30072 | |
Tssr30073 | 3 | 12 | + | TSS region | transcription start site region 30073 | |
Tssr30074 | 3 | 22 | + | TSS region | transcription start site region 30074 | |
Tssr937 | 3 | 39 | + | TSS region | transcription start site region 937 | |
Cpgi13411 | 3 | 774 | CpG island | CpG island 13411 | ||
Mir92b | 3 | 82 | - | miRNA gene | microRNA 92b | |
Tssr34099 | 3 | 3 | - | TSS region | transcription start site region 34099 | |
Cpgi13412 | 3 | 281 | CpG island | CpG island 13412 | ||
Tssr30075 | 3 | 20 | + | TSS region | transcription start site region 30075 | |
Muc1 | 3 | 4324 | + | protein coding gene | mucin 1, transmembrane | |
Tssr30076 | 3 | 17 | + | TSS region | transcription start site region 30076 | |
Tssr30077 | 3 | 53 | + | TSS region | transcription start site region 30077 | |
Tssr30078 | 3 | 13 | + | TSS region | transcription start site region 30078 | |
Tssr30079 | 3 | 14 | + | TSS region | transcription start site region 30079 | |
Tssr30080 | 3 | 10 | + | TSS region | transcription start site region 30080 | |
Lmr11 | 3 | 127 | QTL | leishmaniasis resistance 11 | ||
Lmr11c | 3 | 127 | QTL | leishmaniasis resistance 11c | ||
D3Mit49 | 3 | 127 | DNA segment | DNA segment, Chr 3, Massachusetts Institute of Technology 49 | ||
D3Dcr14 | 3 | 107 | DNA segment | DNA Segment, Chr 3, Derry C. Roopenian 14 | ||
Trim46 | 3 | 11985 | - | protein coding gene | tripartite motif-containing 46 | |
Tssr34100 | 3 | 8 | - | TSS region | transcription start site region 34100 | |
Tssr34101 | 3 | 13 | - | TSS region | transcription start site region 34101 | |
Tssr938 | 3 | 44 | - | TSS region | transcription start site region 938 | |
Tssr34102 | 3 | 35 | - | TSS region | transcription start site region 34102 | |
Tssr34103 | 3 | 36 | - | TSS region | transcription start site region 34103 | |
Tssr30081 | 3 | 49 | + | TSS region | transcription start site region 30081 | |
Tssr30082 | 3 | 27 | + | TSS region | transcription start site region 30082 | |
Tssr34104 | 3 | 26 | - | TSS region | transcription start site region 34104 | |
Tssr34105 | 3 | 34 | - | TSS region | transcription start site region 34105 | |
Tssr939 | 3 | 36 | - | TSS region | transcription start site region 939 | |
Tssr34106 | 3 | 14 | - | TSS region | transcription start site region 34106 | |
Tssr34107 | 3 | 70 | - | TSS region | transcription start site region 34107 | |
Tssr30083 | 3 | 41 | + | TSS region | transcription start site region 30083 | |
Cpgi13413 | 3 | 1041 | CpG island | CpG island 13413 | ||
Tssr30084 | 3 | 26 | + | TSS region | transcription start site region 30084 | |
Krtcap2 | 3 | 3493 | + | protein coding gene | keratinocyte associated protein 2 | |
Tssr30085 | 3 | 96 | + | TSS region | transcription start site region 30085 | |
Cpgi13414 | 3 | 233 | CpG island | CpG island 13414 | ||
Dpm3 | 3 | 7721 | + | protein coding gene | dolichyl-phosphate mannosyltransferase polypeptide 3 | |
Cpgi13415 | 3 | 744 | CpG island | CpG island 13415 | ||
Tssr30086 | 3 | 33 | + | TSS region | transcription start site region 30086 | |
Slc50a1 | 3 | 2324 | - | protein coding gene | solute carrier family 50 (sugar transporter), member 1 | |
Cpgi13416 | 3 | 1003 | CpG island | CpG island 13416 | ||
Tssr34108 | 3 | 7 | - | TSS region | transcription start site region 34108 | |
Tssr34109 | 3 | 62 | - | TSS region | transcription start site region 34109 | |
Efna1 | 3 | 9221 | - | protein coding gene | ephrin A1 | |
Tssr30087 | 3 | 1 | + | TSS region | transcription start site region 30087 | |
Cpgi13417 | 3 | 2178 | CpG island | CpG island 13417 | ||
Tssr34110 | 3 | 11 | - | TSS region | transcription start site region 34110 | |
Tssr34111 | 3 | 25 | - | TSS region | transcription start site region 34111 | |
Tssr34112 | 3 | 14 | - | TSS region | transcription start site region 34112 | |
Gm33845 | 3 | 12359 | - | lncRNA gene | predicted gene, 33845 | |
Tssr30088 | 3 | 11 | + | TSS region | transcription start site region 30088 | |
Cpgi13418 | 3 | 285 | CpG island | CpG island 13418 | ||
Gm22642 | 3 | 251 | + | unclassified non-coding RNA gene | predicted gene, 22642 | |
Tssr30089 | 3 | 17 | + | TSS region | transcription start site region 30089 | |
Tssr30090 | 3 | 11 | + | TSS region | transcription start site region 30090 | |
Gm34014 | 3 | 10987 | + | lncRNA gene | predicted gene, 34014 | |
Cpgi13419 | 3 | 176 | CpG island | CpG island 13419 | ||
Efna3 | 3 | 9061 | - | protein coding gene | ephrin A3 | |
Gm15998 | 3 | 3468 | + | antisense lncRNA gene | predicted gene 15998 | |
Cpgi13420 | 3 | 653 | CpG island | CpG island 13420 | ||
Cpgi13421 | 3 | 402 | CpG island | CpG island 13421 | ||
Cpgi13422 | 3 | 4577 | CpG island | CpG island 13422 | ||
Tssr34113 | 3 | 12 | - | TSS region | transcription start site region 34113 | |
Tssr34114 | 3 | 63 | - | TSS region | transcription start site region 34114 | |
Gm34118 | 3 | 5265 | - | lncRNA gene | predicted gene, 34118 | |
Efna4 | 3 | 4635 | - | protein coding gene | ephrin A4 | |
Cpgi13423 | 3 | 651 | CpG island | CpG island 13423 | ||
4731419I09Rik | 3 | 9981 | + | antisense lncRNA gene | RIKEN cDNA 4731419I09 gene | |
Tssr34115 | 3 | 16 | - | TSS region | transcription start site region 34115 | |
Tssr34116 | 3 | 61 | - | TSS region | transcription start site region 34116 | |
Adam15 | 3 | 10388 | - | protein coding gene | a disintegrin and metallopeptidase domain 15 (metargidin) | |
Tssr30091 | 3 | 9 | + | TSS region | transcription start site region 30091 | |
Tssr34117 | 3 | 45 | - | TSS region | transcription start site region 34117 | |
Tssr34118 | 3 | 42 | - | TSS region | transcription start site region 34118 | |
Tssr34119 | 3 | 50 | - | TSS region | transcription start site region 34119 | |
Cpgi13424 | 3 | 1629 | CpG island | CpG island 13424 | ||
Tssr34120 | 3 | 20 | - | TSS region | transcription start site region 34120 | |
Tssr34121 | 3 | 33 | - | TSS region | transcription start site region 34121 | |
Dcst1 | 3 | 15034 | - | protein coding gene | DC-STAMP domain containing 1 | |
Gm10702 | 3 | 1269 | + | pseudogene | predicted gene 10702 | |
Tssr34122 | 3 | 25 | - | TSS region | transcription start site region 34122 | |
Dcst2 | 3 | 15574 | + | protein coding gene | DC-STAMP domain containing 2 | |
Tssr34123 | 3 | 3 | - | TSS region | transcription start site region 34123 | |
Tssr34124 | 3 | 11 | - | TSS region | transcription start site region 34124 | |
Tssr30092 | 3 | 50 | + | TSS region | transcription start site region 30092 | |
Tssr30093 | 3 | 15 | + | TSS region | transcription start site region 30093 | |
Tssr30094 | 3 | 79 | + | TSS region | transcription start site region 30094 | |
Tssr30095 | 3 | 6 | + | TSS region | transcription start site region 30095 | |
Zbtb7b | 3 | 17132 | - | protein coding gene | zinc finger and BTB domain containing 7B | |
Cpgi13425 | 3 | 326 | CpG island | CpG island 13425 | ||
Cpgi13426 | 3 | 226 | CpG island | CpG island 13426 | ||
Tssr34125 | 3 | 8 | - | TSS region | transcription start site region 34125 | |
Tssr34126 | 3 | 13 | - | TSS region | transcription start site region 34126 | |
Tssr34127 | 3 | 8 | - | TSS region | transcription start site region 34127 | |
Tssr34128 | 3 | 18 | - | TSS region | transcription start site region 34128 | |
Tssr34129 | 3 | 16 | - | TSS region | transcription start site region 34129 | |
Tssr34130 | 3 | 11 | - | TSS region | transcription start site region 34130 | |
Tssr34131 | 3 | 11 | - | TSS region | transcription start site region 34131 | |
Ctrq2 | 3 | -48514587 | QTL | C. trachomatis resistance QTL 2 |