Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:88782819-89592830

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301 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cia5a 3 87263147 to 89232787 1969640 QTL collagen induced arthritis QTL 5a
5830417I10Rik 3 88775216 to 88825587 50371 + pseudogene RIKEN cDNA 5830417I10 gene
1500004A13Rik 3 88822010 to 88832487 10477 - lncRNA gene RIKEN cDNA 1500004A13 gene
Tssr34067 3 88832546 to 88832571 25 - TSS region transcription start site region 34067
Gon4l 3 88835231 to 88910103 74872 + protein coding gene gon-4-like (C.elegans)
Gm43713 3 88845025 to 88900001 54976 - antisense lncRNA gene predicted gene 43713
Gm23054 3 88862919 to 88863080 161 + snRNA gene predicted gene, 23054
Gm40091 3 88880917 to 88899936 19019 - lncRNA gene predicted gene, 40091
n-R5s197 3 88906510 to 88906628 118 + rRNA gene nuclear encoded rRNA 5S 197
Msto1 3 88909616 to 88913950 4334 - protein coding gene misato 1, mitochondrial distribution and morphology regulator
Cpgi13393 3 88913369 to 88914169 800 CpG island CpG island 13393
Tssr34068 3 88913800 to 88913811 11 - TSS region transcription start site region 34068
Tssr34069 3 88913885 to 88913948 63 - TSS region transcription start site region 34069
Tssr34070 3 88913977 to 88914004 27 - TSS region transcription start site region 34070
Tssr30021 3 88914001 to 88914035 34 + TSS region transcription start site region 30021
Tssr30022 3 88914048 to 88914067 19 + TSS region transcription start site region 30022
Dap3 3 88920803 to 88951181 30378 - protein coding gene death associated protein 3
Cpgi13394 3 88949544 to 88951271 1727 CpG island CpG island 13394
Tssr34071 3 88949937 to 88949989 52 - TSS region transcription start site region 34071
Tssr30023 3 88950031 to 88950082 51 + TSS region transcription start site region 30023
Tssr34072 3 88950153 to 88950190 37 - TSS region transcription start site region 34072
Tssr34073 3 88950192 to 88950221 29 - TSS region transcription start site region 34073
Tssr34074 3 88950281 to 88950321 40 - TSS region transcription start site region 34074
Tssr30024 3 88950350 to 88950395 45 + TSS region transcription start site region 30024
Tssr34075 3 88950401 to 88950432 31 - TSS region transcription start site region 34075
Tssr30025 3 88950429 to 88950446 17 + TSS region transcription start site region 30025
Tssr34076 3 88950476 to 88950584 108 - TSS region transcription start site region 34076
Ash1l 3 88950622 to 89079375 128753 + protein coding gene ASH1 like histone lysine methyltransferase
Tssr30026 3 88950638 to 88950668 30 + TSS region transcription start site region 30026
Tssr30027 3 88950671 to 88950692 21 + TSS region transcription start site region 30027
Tssr30028 3 88950701 to 88950749 48 + TSS region transcription start site region 30028
Tssr30029 3 88950788 to 88950852 64 + TSS region transcription start site region 30029
Tssr30030 3 88950859 to 88950872 13 + TSS region transcription start site region 30030
Tssr34077 3 88951090 to 88951115 25 - TSS region transcription start site region 34077
Tssr34078 3 88951119 to 88951133 14 - TSS region transcription start site region 34078
Tssr34079 3 88951146 to 88951213 67 - TSS region transcription start site region 34079
Gm26465 3 88970623 to 88970729 106 - snRNA gene predicted gene, 26465
Tssr30031 3 88970717 to 88970721 4 + TSS region transcription start site region 30031
Tssr30032 3 88984876 to 88984918 42 + TSS region transcription start site region 30032
D3Mit282 3 89014012 to 89014133 121 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 282
Tssr30033 3 89043241 to 89043278 37 + TSS region transcription start site region 30033
Gm24403 3 89048998 to 89049127 129 - snoRNA gene predicted gene, 24403
Gm43738 3 89081939 to 89101099 19160 - protein coding gene predicted gene 43738
Rusc1 3 89083981 to 89093311 9330 - protein coding gene RUN and SH3 domain containing 1
Cpgi13395 3 89087666 to 89087832 166 CpG island CpG island 13395
Tssr30034 3 89088768 to 89088804 36 + TSS region transcription start site region 30034
Cpgi13396 3 89089628 to 89091720 2092 CpG island CpG island 13396
Tssr34080 3 89089660 to 89089669 9 - TSS region transcription start site region 34080
Tssr34081 3 89089699 to 89089716 17 - TSS region transcription start site region 34081
Tssr34082 3 89089748 to 89089759 11 - TSS region transcription start site region 34082
Tssr34083 3 89089854 to 89089870 16 - TSS region transcription start site region 34083
Tssr34084 3 89089955 to 89090008 53 - TSS region transcription start site region 34084
Tssr34085 3 89091530 to 89091570 40 - TSS region transcription start site region 34085
Cpgi13397 3 89093055 to 89093524 469 CpG island CpG island 13397
Tssr34086 3 89093285 to 89093356 71 - TSS region transcription start site region 34086
Tssr34087 3 89093358 to 89093367 9 - TSS region transcription start site region 34087
Tssr34088 3 89093369 to 89093372 3 - TSS region transcription start site region 34088
Fdps 3 89093588 to 89101959 8371 - protein coding gene farnesyl diphosphate synthetase
Tssr34089 3 89094856 to 89094860 4 - TSS region transcription start site region 34089
Gm22935 3 89097910 to 89098013 103 - snRNA gene predicted gene, 22935
Cpgi13398 3 89101497 to 89102249 752 CpG island CpG island 13398
Tssr34090 3 89101858 to 89101898 40 - TSS region transcription start site region 34090
Tssr34091 3 89101907 to 89101969 62 - TSS region transcription start site region 34091
Tssr34092 3 89102017 to 89102020 3 - TSS region transcription start site region 34092
Tssr30035 3 89116707 to 89116711 4 + TSS region transcription start site region 30035
Gm29704 3 89116724 to 89116976 252 + pseudogene predicted gene, 29704
Cpgi13399 3 89132266 to 89132733 467 CpG island CpG island 13399
Tssr30036 3 89136116 to 89136123 7 + TSS region transcription start site region 30036
Pklr 3 89136129 to 89146600 10471 + protein coding gene pyruvate kinase liver and red blood cell
Tssr30037 3 89136133 to 89136183 50 + TSS region transcription start site region 30037
Tssr30038 3 89136573 to 89136593 20 + TSS region transcription start site region 30038
Tssr30039 3 89136608 to 89136629 21 + TSS region transcription start site region 30039
Tssr30040 3 89140213 to 89140230 17 + TSS region transcription start site region 30040
Tssr30041 3 89146071 to 89146075 4 + TSS region transcription start site region 30041
Tssr30042 3 89146145 to 89146154 9 + TSS region transcription start site region 30042
Hcn3 3 89146775 to 89160230 13455 - protein coding gene hyperpolarization-activated, cyclic nucleotide-gated K+ 3
Cpgi13400 3 89147740 to 89148348 608 CpG island CpG island 13400
Cpgi13401 3 89149818 to 89150036 218 CpG island CpG island 13401
Cpgi13402 3 89150332 to 89150486 154 CpG island CpG island 13402
Cpgi13403 3 89152671 to 89152966 295 CpG island CpG island 13403
Cpgi13404 3 89159608 to 89160514 906 CpG island CpG island 13404
Tssr34093 3 89160155 to 89160202 47 - TSS region transcription start site region 34093
Cpgi13405 3 89164602 to 89165354 752 CpG island CpG island 13405
Tssr30043 3 89164790 to 89164863 73 + TSS region transcription start site region 30043
Gm45927 3 89164795 to 89182770 17975 + protein coding gene predicted gene, 45927
Clk2 3 89164795 to 89176921 12126 + protein coding gene CDC-like kinase 2
Tssr30044 3 89167079 to 89167084 5 + TSS region transcription start site region 30044
Cpgi13406 3 89177330 to 89178050 720 CpG island CpG island 13406
Tssr30045 3 89177463 to 89177543 80 + TSS region transcription start site region 30045
Scamp3 3 89177473 to 89182765 5292 + protein coding gene secretory carrier membrane protein 3
Tssr30046 3 89177553 to 89177592 39 + TSS region transcription start site region 30046
Gm16069 3 89180755 to 89182293 1538 - antisense lncRNA gene predicted gene 16069
Cpgi13407 3 89183121 to 89183879 758 CpG island CpG island 13407
Tssr30047 3 89183131 to 89183207 76 + TSS region transcription start site region 30047
Fam189b 3 89183143 to 89189291 6148 + protein coding gene family with sequence similarity 189, member B
Tssr30048 3 89183399 to 89183410 11 + TSS region transcription start site region 30048
Tssr30049 3 89186712 to 89186721 9 + TSS region transcription start site region 30049
Tssr30050 3 89186733 to 89186744 11 + TSS region transcription start site region 30050
Tssr30051 3 89186746 to 89186757 11 + TSS region transcription start site region 30051
Tssr30052 3 89186776 to 89186787 11 + TSS region transcription start site region 30052
Cpgi13408 3 89187147 to 89187607 460 CpG island CpG island 13408
Tssr30053 3 89187363 to 89187375 12 + TSS region transcription start site region 30053
Tssr30054 3 89187390 to 89187409 19 + TSS region transcription start site region 30054
Tssr30055 3 89187431 to 89187457 26 + TSS region transcription start site region 30055
Tssr30056 3 89187475 to 89187488 13 + TSS region transcription start site region 30056
Tssr30057 3 89187819 to 89187830 11 + TSS region transcription start site region 30057
Tssr30058 3 89187870 to 89187896 26 + TSS region transcription start site region 30058
Tssr30059 3 89187921 to 89187965 44 + TSS region transcription start site region 30059
Tssr30060 3 89187974 to 89187997 23 + TSS region transcription start site region 30060
Tssr30061 3 89188320 to 89188328 8 + TSS region transcription start site region 30061
Tssr30062 3 89188348 to 89188366 18 + TSS region transcription start site region 30062
Tssr30063 3 89188405 to 89188410 5 + TSS region transcription start site region 30063
Tssr34094 3 89188600 to 89188637 37 - TSS region transcription start site region 34094
Cpgi13409 3 89196437 to 89196824 387 CpG island CpG island 13409
Gm23269 3 89201167 to 89201273 106 - snRNA gene predicted gene, 23269
Tssr30064 3 89202916 to 89202962 46 + TSS region transcription start site region 30064
Gba 3 89202928 to 89208966 6038 + protein coding gene glucosidase, beta, acid
Tssr30065 3 89202963 to 89202976 13 + TSS region transcription start site region 30065
Tssr30066 3 89202994 to 89203010 16 + TSS region transcription start site region 30066
Tssr30067 3 89203977 to 89203994 17 + TSS region transcription start site region 30067
Tssr30068 3 89204065 to 89204092 27 + TSS region transcription start site region 30068
Tssr30069 3 89204341 to 89204382 41 + TSS region transcription start site region 30069
Mtx1 3 89209081 to 89214341 5260 - protein coding gene metaxin 1
Gm43737 3 89210425 to 89213164 2739 + unclassified gene predicted gene 43737
D3Nds20 3 89211759 to 89211947 188 DNA segment DNA segment, Chr 3, Nuffield Department of Surgery 20
Cpgi13410 3 89213526 to 89214644 1118 CpG island CpG island 13410
Tssr34095 3 89213892 to 89213923 31 - TSS region transcription start site region 34095
Tssr30070 3 89213926 to 89213944 18 + TSS region transcription start site region 30070
Tssr34096 3 89214240 to 89214254 14 - TSS region transcription start site region 34096
Tssr34097 3 89214329 to 89214372 43 - TSS region transcription start site region 34097
Tssr34098 3 89214378 to 89214387 9 - TSS region transcription start site region 34098
Tssr30071 3 89215170 to 89215181 11 + TSS region transcription start site region 30071
Thbs3 3 89215180 to 89226837 11657 + protein coding gene thrombospondin 3
Tssr30072 3 89215192 to 89215243 51 + TSS region transcription start site region 30072
Tssr30073 3 89225072 to 89225084 12 + TSS region transcription start site region 30073
Tssr30074 3 89226174 to 89226196 22 + TSS region transcription start site region 30074
Tssr937 3 89226229 to 89226268 39 + TSS region transcription start site region 937
Cpgi13411 3 89227007 to 89227781 774 CpG island CpG island 13411
Mir92b 3 89227116 to 89227198 82 - miRNA gene microRNA 92b
Tssr34099 3 89227385 to 89227388 3 - TSS region transcription start site region 34099
Cpgi13412 3 89228141 to 89228422 281 CpG island CpG island 13412
Tssr30075 3 89229046 to 89229066 20 + TSS region transcription start site region 30075
Muc1 3 89229057 to 89233381 4324 + protein coding gene mucin 1, transmembrane
Tssr30076 3 89230309 to 89230326 17 + TSS region transcription start site region 30076
Tssr30077 3 89230825 to 89230878 53 + TSS region transcription start site region 30077
Tssr30078 3 89231483 to 89231496 13 + TSS region transcription start site region 30078
Tssr30079 3 89231784 to 89231798 14 + TSS region transcription start site region 30079
Tssr30080 3 89231816 to 89231826 10 + TSS region transcription start site region 30080
D3Mit49 3 89232660 to 89232787 127 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 49
Lmr11 3 89232660 to 89232787 127 QTL leishmaniasis resistance 11
Lmr11c 3 89232660 to 89232787 127 QTL leishmaniasis resistance 11c
D3Dcr14 3 89232671 to 89232778 107 DNA segment DNA Segment, Chr 3, Derry C. Roopenian 14
Trim46 3 89234169 to 89246154 11985 - protein coding gene tripartite motif-containing 46
Tssr34100 3 89237837 to 89237845 8 - TSS region transcription start site region 34100
Tssr34101 3 89237927 to 89237940 13 - TSS region transcription start site region 34101
Tssr938 3 89238406 to 89238450 44 - TSS region transcription start site region 938
Tssr34102 3 89238701 to 89238736 35 - TSS region transcription start site region 34102
Tssr34103 3 89239443 to 89239479 36 - TSS region transcription start site region 34103
Tssr30081 3 89243749 to 89243798 49 + TSS region transcription start site region 30081
Tssr30082 3 89243822 to 89243849 27 + TSS region transcription start site region 30082
Tssr34104 3 89245005 to 89245031 26 - TSS region transcription start site region 34104
Tssr34105 3 89245159 to 89245193 34 - TSS region transcription start site region 34105
Tssr939 3 89245227 to 89245263 36 - TSS region transcription start site region 939
Tssr34106 3 89245811 to 89245825 14 - TSS region transcription start site region 34106
Tssr34107 3 89245829 to 89245899 70 - TSS region transcription start site region 34107
Tssr30083 3 89245878 to 89245919 41 + TSS region transcription start site region 30083
Cpgi13413 3 89245883 to 89246924 1041 CpG island CpG island 13413
Tssr30084 3 89245952 to 89245978 26 + TSS region transcription start site region 30084
Krtcap2 3 89246236 to 89249729 3493 + protein coding gene keratinocyte associated protein 2
Tssr30085 3 89246397 to 89246493 96 + TSS region transcription start site region 30085
Cpgi13414 3 89251439 to 89251672 233 CpG island CpG island 13414
Dpm3 3 89259358 to 89267079 7721 + protein coding gene dolichyl-phosphate mannosyltransferase polypeptide 3
Cpgi13415 3 89266341 to 89267085 744 CpG island CpG island 13415
Tssr30086 3 89266557 to 89266590 33 + TSS region transcription start site region 30086
Slc50a1 3 89268246 to 89270570 2324 - protein coding gene solute carrier family 50 (sugar transporter), member 1
Cpgi13416 3 89270091 to 89271094 1003 CpG island CpG island 13416
Tssr34108 3 89270481 to 89270488 7 - TSS region transcription start site region 34108
Tssr34109 3 89270489 to 89270551 62 - TSS region transcription start site region 34109
Efna1 3 89271730 to 89280951 9221 - protein coding gene ephrin A1
Tssr30087 3 89271907 to 89271908 1 + TSS region transcription start site region 30087
Cpgi13417 3 89279341 to 89281519 2178 CpG island CpG island 13417
Tssr34110 3 89279583 to 89279594 11 - TSS region transcription start site region 34110
Tssr34111 3 89279602 to 89279627 25 - TSS region transcription start site region 34111
Tssr34112 3 89279633 to 89279647 14 - TSS region transcription start site region 34112
Gm33845 3 89290540 to 89302899 12359 - lncRNA gene predicted gene, 33845
Tssr30088 3 89293894 to 89293905 11 + TSS region transcription start site region 30088
Cpgi13418 3 89299707 to 89299992 285 CpG island CpG island 13418
Gm22642 3 89302478 to 89302729 251 + unclassified non-coding RNA gene predicted gene, 22642
Tssr30089 3 89302862 to 89302879 17 + TSS region transcription start site region 30089
Tssr30090 3 89302887 to 89302898 11 + TSS region transcription start site region 30090
Gm34014 3 89303238 to 89314225 10987 + lncRNA gene predicted gene, 34014
Cpgi13419 3 89308365 to 89308541 176 CpG island CpG island 13419
Efna3 3 89313899 to 89322960 9061 - protein coding gene ephrin A3
Gm15998 3 89315439 to 89318907 3468 + antisense lncRNA gene predicted gene 15998
Cpgi13420 3 89315442 to 89316095 653 CpG island CpG island 13420
Cpgi13421 3 89316432 to 89316834 402 CpG island CpG island 13421
Cpgi13422 3 89319113 to 89323690 4577 CpG island CpG island 13422
Tssr34113 3 89322860 to 89322872 12 - TSS region transcription start site region 34113
Tssr34114 3 89322883 to 89322946 63 - TSS region transcription start site region 34114
Gm34118 3 89325903 to 89331168 5265 - lncRNA gene predicted gene, 34118