Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:88690231-89055103

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63 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Khdc4 3 88685803 to 88712924 27121 + protein coding gene KH domain containing 4, pre-mRNA splicing factor
Gm25820 3 88693931 to 88694057 126 + snoRNA gene predicted gene, 25820
Tssr30017 3 88702114 to 88702119 5 + TSS region transcription start site region 30017
Gm25945 3 88707158 to 88707292 134 + snoRNA gene predicted gene, 25945
Cpgi13390 3 88716744 to 88717240 496 CpG island CpG island 13390
Tssr30018 3 88716838 to 88716883 45 + TSS region transcription start site region 30018
Rit1 3 88716841 to 88731048 14207 + protein coding gene Ras-like without CAAX 1
Tssr30019 3 88716884 to 88716905 21 + TSS region transcription start site region 30019
Tssr30020 3 88716916 to 88716921 5 + TSS region transcription start site region 30020
Gm17146 3 88722090 to 88722670 580 + antisense lncRNA gene predicted gene 17146
Gm10253 3 88738753 to 88739692 939 - unclassified gene predicted gene 10253
Syt11 3 88744699 to 88775159 30460 - protein coding gene synaptotagmin XI
Tssr34059 3 88744986 to 88744999 13 - TSS region transcription start site region 34059
Tssr34060 3 88745056 to 88745068 12 - TSS region transcription start site region 34060
Tssr34061 3 88748878 to 88748889 11 - TSS region transcription start site region 34061
Tssr34062 3 88752845 to 88752849 4 - TSS region transcription start site region 34062
Tssr34063 3 88755964 to 88755966 2 - TSS region transcription start site region 34063
Cpgi13391 3 88761815 to 88762014 199 CpG island CpG island 13391
Tssr34064 3 88762139 to 88762152 13 - TSS region transcription start site region 34064
Tssr34065 3 88762244 to 88762255 11 - TSS region transcription start site region 34065
Tssr34066 3 88772578 to 88772601 23 - TSS region transcription start site region 34066
5830417I10Rik 3 88775216 to 88825587 50371 + pseudogene RIKEN cDNA 5830417I10 gene
Cpgi13392 3 88775362 to 88775602 240 CpG island CpG island 13392
1500004A13Rik 3 88822010 to 88832487 10477 - lncRNA gene RIKEN cDNA 1500004A13 gene
Tssr34067 3 88832546 to 88832571 25 - TSS region transcription start site region 34067
Gon4l 3 88835231 to 88910103 74872 + protein coding gene gon-4-like (C.elegans)
Gm43713 3 88845025 to 88900001 54976 - antisense lncRNA gene predicted gene 43713
Gm23054 3 88862919 to 88863080 161 + snRNA gene predicted gene, 23054
Gm40091 3 88880917 to 88899936 19019 - lncRNA gene predicted gene, 40091
n-R5s197 3 88906510 to 88906628 118 + rRNA gene nuclear encoded rRNA 5S 197
Msto1 3 88909616 to 88913950 4334 - protein coding gene misato 1, mitochondrial distribution and morphology regulator
Cpgi13393 3 88913369 to 88914169 800 CpG island CpG island 13393
Tssr34068 3 88913800 to 88913811 11 - TSS region transcription start site region 34068
Tssr34069 3 88913885 to 88913948 63 - TSS region transcription start site region 34069
Tssr34070 3 88913977 to 88914004 27 - TSS region transcription start site region 34070
Tssr30021 3 88914001 to 88914035 34 + TSS region transcription start site region 30021
Tssr30022 3 88914048 to 88914067 19 + TSS region transcription start site region 30022
Dap3 3 88920803 to 88951181 30378 - protein coding gene death associated protein 3
Cpgi13394 3 88949544 to 88951271 1727 CpG island CpG island 13394
Tssr34071 3 88949937 to 88949989 52 - TSS region transcription start site region 34071
Tssr30023 3 88950031 to 88950082 51 + TSS region transcription start site region 30023
Tssr34072 3 88950153 to 88950190 37 - TSS region transcription start site region 34072
Tssr34073 3 88950192 to 88950221 29 - TSS region transcription start site region 34073
Tssr34074 3 88950281 to 88950321 40 - TSS region transcription start site region 34074
Tssr30024 3 88950350 to 88950395 45 + TSS region transcription start site region 30024
Tssr34075 3 88950401 to 88950432 31 - TSS region transcription start site region 34075
Tssr30025 3 88950429 to 88950446 17 + TSS region transcription start site region 30025
Tssr34076 3 88950476 to 88950584 108 - TSS region transcription start site region 34076
Ash1l 3 88950622 to 89079375 128753 + protein coding gene ASH1 like histone lysine methyltransferase
Tssr30026 3 88950638 to 88950668 30 + TSS region transcription start site region 30026
Tssr30027 3 88950671 to 88950692 21 + TSS region transcription start site region 30027
Tssr30028 3 88950701 to 88950749 48 + TSS region transcription start site region 30028
Tssr30029 3 88950788 to 88950852 64 + TSS region transcription start site region 30029
Tssr30030 3 88950859 to 88950872 13 + TSS region transcription start site region 30030
Tssr34077 3 88951090 to 88951115 25 - TSS region transcription start site region 34077
Tssr34078 3 88951119 to 88951133 14 - TSS region transcription start site region 34078
Tssr34079 3 88951146 to 88951213 67 - TSS region transcription start site region 34079
Gm26465 3 88970623 to 88970729 106 - snRNA gene predicted gene, 26465
Tssr30031 3 88970717 to 88970721 4 + TSS region transcription start site region 30031
Tssr30032 3 88984876 to 88984918 42 + TSS region transcription start site region 30032
D3Mit282 3 89014012 to 89014133 121 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 282
Tssr30033 3 89043241 to 89043278 37 + TSS region transcription start site region 30033
Gm24403 3 89048998 to 89049127 129 - snoRNA gene predicted gene, 24403