Gene symbol | Chromo- some |
Coordinates (bp, mm10) | Size (bp) | Strand | Feature Type | Gene name |
---|---|---|---|---|---|---|
Cia5a | 3 | 1969640 | QTL | collagen induced arthritis QTL 5a | ||
Tssr29978 | 3 | 24 | + | TSS region | transcription start site region 29978 | |
Tssr29979 | 3 | 18 | + | TSS region | transcription start site region 29979 | |
Tssr29980 | 3 | 14 | + | TSS region | transcription start site region 29980 | |
Arhgef2 | 3 | 42086 | + | protein coding gene | rho/rac guanine nucleotide exchange factor (GEF) 2 | |
Gm40090 | 3 | 554 | - | lncRNA gene | predicted gene, 40090 | |
Tssr29981 | 3 | 72 | + | TSS region | transcription start site region 29981 | |
Tssr29982 | 3 | 17 | + | TSS region | transcription start site region 29982 | |
Tssr34056 | 3 | 13 | - | TSS region | transcription start site region 34056 | |
Tssr29983 | 3 | 30 | + | TSS region | transcription start site region 29983 | |
Tssr29984 | 3 | 6 | + | TSS region | transcription start site region 29984 | |
Tssr29985 | 3 | 3 | + | TSS region | transcription start site region 29985 | |
Tssr29986 | 3 | 13 | + | TSS region | transcription start site region 29986 | |
Tssr29987 | 3 | 8 | + | TSS region | transcription start site region 29987 | |
Tssr29988 | 3 | 30 | + | TSS region | transcription start site region 29988 | |
Tssr29989 | 3 | 15 | + | TSS region | transcription start site region 29989 | |
Tssr29990 | 3 | 14 | + | TSS region | transcription start site region 29990 | |
Tssr29991 | 3 | 6 | + | TSS region | transcription start site region 29991 | |
Tssr29992 | 3 | 30 | + | TSS region | transcription start site region 29992 | |
Tssr29993 | 3 | 26 | + | TSS region | transcription start site region 29993 | |
Tssr29994 | 3 | 18 | + | TSS region | transcription start site region 29994 | |
Tssr29995 | 3 | 54 | + | TSS region | transcription start site region 29995 | |
Tssr29996 | 3 | 9 | + | TSS region | transcription start site region 29996 | |
Tssr936 | 3 | 15 | + | TSS region | transcription start site region 936 | |
Gm20652 | 3 | 3202 | - | antisense lncRNA gene | predicted gene 20652 | |
Tssr29997 | 3 | 8 | + | TSS region | transcription start site region 29997 | |
Cpgi13387 | 3 | 1274 | CpG island | CpG island 13387 | ||
Tssr29998 | 3 | 28 | + | TSS region | transcription start site region 29998 | |
Tssr29999 | 3 | 29 | + | TSS region | transcription start site region 29999 | |
Tssr30000 | 3 | 11 | + | TSS region | transcription start site region 30000 | |
Tssr30001 | 3 | 11 | + | TSS region | transcription start site region 30001 | |
Tssr30002 | 3 | 80 | + | TSS region | transcription start site region 30002 | |
Tssr30003 | 3 | 40 | + | TSS region | transcription start site region 30003 | |
Tssr30004 | 3 | 25 | + | TSS region | transcription start site region 30004 | |
Tssr34057 | 3 | 5 | - | TSS region | transcription start site region 34057 | |
Tssr34058 | 3 | 16 | - | TSS region | transcription start site region 34058 | |
Tssr30005 | 3 | 5 | + | TSS region | transcription start site region 30005 | |
Tssr30006 | 3 | 28 | + | TSS region | transcription start site region 30006 | |
Tssr30007 | 3 | 16 | + | TSS region | transcription start site region 30007 | |
Tssr30008 | 3 | 11 | + | TSS region | transcription start site region 30008 | |
Cpgi13388 | 3 | 241 | CpG island | CpG island 13388 | ||
Tssr30009 | 3 | 11 | + | TSS region | transcription start site region 30009 | |
Tssr30010 | 3 | 26 | + | TSS region | transcription start site region 30010 | |
Tssr30011 | 3 | 12 | + | TSS region | transcription start site region 30011 | |
Tssr30012 | 3 | 20 | + | TSS region | transcription start site region 30012 | |
Tssr30013 | 3 | 14 | + | TSS region | transcription start site region 30013 | |
Rxfp4 | 3 | 1244 | - | protein coding gene | relaxin family peptide receptor 4 | |
Gm43714 | 3 | 1373 | - | antisense lncRNA gene | predicted gene 43714 | |
Tssr30014 | 3 | 18 | + | TSS region | transcription start site region 30014 | |
Cpgi13389 | 3 | 1235 | CpG island | CpG island 13389 | ||
Tssr30015 | 3 | 11 | + | TSS region | transcription start site region 30015 | |
Tssr30016 | 3 | 50 | + | TSS region | transcription start site region 30016 | |
Khdc4 | 3 | 27121 | + | protein coding gene | KH domain containing 4, pre-mRNA splicing factor | |
Gm25820 | 3 | 126 | + | snoRNA gene | predicted gene, 25820 | |
Tssr30017 | 3 | 5 | + | TSS region | transcription start site region 30017 | |
Gm25945 | 3 | 134 | + | snoRNA gene | predicted gene, 25945 | |
Cpgi13390 | 3 | 496 | CpG island | CpG island 13390 | ||
Tssr30018 | 3 | 45 | + | TSS region | transcription start site region 30018 | |
Rit1 | 3 | 14207 | + | protein coding gene | Ras-like without CAAX 1 | |
Tssr30019 | 3 | 21 | + | TSS region | transcription start site region 30019 | |
Tssr30020 | 3 | 5 | + | TSS region | transcription start site region 30020 | |
Gm17146 | 3 | 580 | + | antisense lncRNA gene | predicted gene 17146 | |
Gm10253 | 3 | 939 | - | unclassified gene | predicted gene 10253 | |
Syt11 | 3 | 30460 | - | protein coding gene | synaptotagmin XI | |
Tssr34059 | 3 | 13 | - | TSS region | transcription start site region 34059 | |
Tssr34060 | 3 | 12 | - | TSS region | transcription start site region 34060 | |
Tssr34061 | 3 | 11 | - | TSS region | transcription start site region 34061 | |
Tssr34062 | 3 | 4 | - | TSS region | transcription start site region 34062 | |
Tssr34063 | 3 | 2 | - | TSS region | transcription start site region 34063 | |
Cpgi13391 | 3 | 199 | CpG island | CpG island 13391 | ||
Tssr34064 | 3 | 13 | - | TSS region | transcription start site region 34064 | |
Tssr34065 | 3 | 11 | - | TSS region | transcription start site region 34065 | |
Tssr34066 | 3 | 23 | - | TSS region | transcription start site region 34066 | |
5830417I10Rik | 3 | 50371 | + | pseudogene | RIKEN cDNA 5830417I10 gene | |
Cpgi13392 | 3 | 240 | CpG island | CpG island 13392 | ||
1500004A13Rik | 3 | 10477 | - | lncRNA gene | RIKEN cDNA 1500004A13 gene | |
Tssr34067 | 3 | 25 | - | TSS region | transcription start site region 34067 | |
Gon4l | 3 | 74872 | + | protein coding gene | gon-4-like (C.elegans) | |
Gm43713 | 3 | 54976 | - | antisense lncRNA gene | predicted gene 43713 | |
Gm23054 | 3 | 161 | + | snRNA gene | predicted gene, 23054 | |
Gm40091 | 3 | 19019 | - | lncRNA gene | predicted gene, 40091 | |
n-R5s197 | 3 | 118 | + | rRNA gene | nuclear encoded rRNA 5S 197 | |
Msto1 | 3 | 4334 | - | protein coding gene | misato 1, mitochondrial distribution and morphology regulator | |
Cpgi13393 | 3 | 800 | CpG island | CpG island 13393 | ||
Tssr34068 | 3 | 11 | - | TSS region | transcription start site region 34068 | |
Tssr34069 | 3 | 63 | - | TSS region | transcription start site region 34069 | |
Tssr34070 | 3 | 27 | - | TSS region | transcription start site region 34070 | |
Tssr30021 | 3 | 34 | + | TSS region | transcription start site region 30021 | |
Tssr30022 | 3 | 19 | + | TSS region | transcription start site region 30022 | |
Dap3 | 3 | 30378 | - | protein coding gene | death associated protein 3 | |
Cpgi13394 | 3 | 1727 | CpG island | CpG island 13394 | ||
Tssr34071 | 3 | 52 | - | TSS region | transcription start site region 34071 | |
Tssr30023 | 3 | 51 | + | TSS region | transcription start site region 30023 | |
Tssr34072 | 3 | 37 | - | TSS region | transcription start site region 34072 | |
Tssr34073 | 3 | 29 | - | TSS region | transcription start site region 34073 | |
Tssr34074 | 3 | 40 | - | TSS region | transcription start site region 34074 | |
Tssr30024 | 3 | 45 | + | TSS region | transcription start site region 30024 | |
Tssr34075 | 3 | 31 | - | TSS region | transcription start site region 34075 | |
Tssr30025 | 3 | 17 | + | TSS region | transcription start site region 30025 | |
Tssr34076 | 3 | 108 | - | TSS region | transcription start site region 34076 | |
Ash1l | 3 | 128753 | + | protein coding gene | ASH1 like histone lysine methyltransferase | |
Tssr30026 | 3 | 30 | + | TSS region | transcription start site region 30026 | |
Tssr30027 | 3 | 21 | + | TSS region | transcription start site region 30027 | |
Tssr30028 | 3 | 48 | + | TSS region | transcription start site region 30028 | |
Tssr30029 | 3 | 64 | + | TSS region | transcription start site region 30029 | |
Tssr30030 | 3 | 13 | + | TSS region | transcription start site region 30030 | |
Tssr34077 | 3 | 25 | - | TSS region | transcription start site region 34077 | |
Tssr34078 | 3 | 14 | - | TSS region | transcription start site region 34078 | |
Tssr34079 | 3 | 67 | - | TSS region | transcription start site region 34079 | |
Gm26465 | 3 | 106 | - | snRNA gene | predicted gene, 26465 | |
Tssr30031 | 3 | 4 | + | TSS region | transcription start site region 30031 | |
Tssr30032 | 3 | 42 | + | TSS region | transcription start site region 30032 | |
D3Mit282 | 3 | 121 | DNA segment | DNA segment, Chr 3, Massachusetts Institute of Technology 282 | ||
Tssr30033 | 3 | 37 | + | TSS region | transcription start site region 30033 | |
Gm24403 | 3 | 129 | - | snoRNA gene | predicted gene, 24403 | |
Gm43738 | 3 | 19160 | - | protein coding gene | predicted gene 43738 | |
Rusc1 | 3 | 9330 | - | protein coding gene | RUN and SH3 domain containing 1 | |
Cpgi13395 | 3 | 166 | CpG island | CpG island 13395 | ||
Tssr30034 | 3 | 36 | + | TSS region | transcription start site region 30034 | |
Cpgi13396 | 3 | 2092 | CpG island | CpG island 13396 | ||
Tssr34080 | 3 | 9 | - | TSS region | transcription start site region 34080 | |
Tssr34081 | 3 | 17 | - | TSS region | transcription start site region 34081 | |
Tssr34082 | 3 | 11 | - | TSS region | transcription start site region 34082 | |
Tssr34083 | 3 | 16 | - | TSS region | transcription start site region 34083 | |
Tssr34084 | 3 | 53 | - | TSS region | transcription start site region 34084 | |
Tssr34085 | 3 | 40 | - | TSS region | transcription start site region 34085 | |
Cpgi13397 | 3 | 469 | CpG island | CpG island 13397 | ||
Tssr34086 | 3 | 71 | - | TSS region | transcription start site region 34086 | |
Tssr34087 | 3 | 9 | - | TSS region | transcription start site region 34087 | |
Tssr34088 | 3 | 3 | - | TSS region | transcription start site region 34088 | |
Fdps | 3 | 8371 | - | protein coding gene | farnesyl diphosphate synthetase | |
Tssr34089 | 3 | 4 | - | TSS region | transcription start site region 34089 | |
Gm22935 | 3 | 103 | - | snRNA gene | predicted gene, 22935 | |
Cpgi13398 | 3 | 752 | CpG island | CpG island 13398 | ||
Tssr34090 | 3 | 40 | - | TSS region | transcription start site region 34090 | |
Tssr34091 | 3 | 62 | - | TSS region | transcription start site region 34091 | |
Tssr34092 | 3 | 3 | - | TSS region | transcription start site region 34092 | |
Tssr30035 | 3 | 4 | + | TSS region | transcription start site region 30035 | |
Gm29704 | 3 | 252 | + | pseudogene | predicted gene, 29704 | |
Cpgi13399 | 3 | 467 | CpG island | CpG island 13399 | ||
Tssr30036 | 3 | 7 | + | TSS region | transcription start site region 30036 | |
Pklr | 3 | 10471 | + | protein coding gene | pyruvate kinase liver and red blood cell | |
Tssr30037 | 3 | 50 | + | TSS region | transcription start site region 30037 | |
Tssr30038 | 3 | 20 | + | TSS region | transcription start site region 30038 | |
Tssr30039 | 3 | 21 | + | TSS region | transcription start site region 30039 | |
Tssr30040 | 3 | 17 | + | TSS region | transcription start site region 30040 | |
Tssr30041 | 3 | 4 | + | TSS region | transcription start site region 30041 | |
Tssr30042 | 3 | 9 | + | TSS region | transcription start site region 30042 | |
Hcn3 | 3 | 13455 | - | protein coding gene | hyperpolarization-activated, cyclic nucleotide-gated K+ 3 | |
Cpgi13400 | 3 | 608 | CpG island | CpG island 13400 | ||
Cpgi13401 | 3 | 218 | CpG island | CpG island 13401 | ||
Cpgi13402 | 3 | 154 | CpG island | CpG island 13402 | ||
Cpgi13403 | 3 | 295 | CpG island | CpG island 13403 | ||
Cpgi13404 | 3 | 906 | CpG island | CpG island 13404 | ||
Tssr34093 | 3 | 47 | - | TSS region | transcription start site region 34093 | |
Cpgi13405 | 3 | 752 | CpG island | CpG island 13405 | ||
Tssr30043 | 3 | 73 | + | TSS region | transcription start site region 30043 | |
Gm45927 | 3 | 17975 | + | protein coding gene | predicted gene, 45927 | |
Clk2 | 3 | 12126 | + | protein coding gene | CDC-like kinase 2 | |
Tssr30044 | 3 | 5 | + | TSS region | transcription start site region 30044 | |
Cpgi13406 | 3 | 720 | CpG island | CpG island 13406 | ||
Tssr30045 | 3 | 80 | + | TSS region | transcription start site region 30045 | |
Scamp3 | 3 | 5292 | + | protein coding gene | secretory carrier membrane protein 3 | |
Tssr30046 | 3 | 39 | + | TSS region | transcription start site region 30046 | |
Gm16069 | 3 | 1538 | - | antisense lncRNA gene | predicted gene 16069 | |
Cpgi13407 | 3 | 758 | CpG island | CpG island 13407 | ||
Tssr30047 | 3 | 76 | + | TSS region | transcription start site region 30047 | |
Fam189b | 3 | 6148 | + | protein coding gene | family with sequence similarity 189, member B | |
Tssr30048 | 3 | 11 | + | TSS region | transcription start site region 30048 | |
Tssr30049 | 3 | 9 | + | TSS region | transcription start site region 30049 | |
Tssr30050 | 3 | 11 | + | TSS region | transcription start site region 30050 | |
Tssr30051 | 3 | 11 | + | TSS region | transcription start site region 30051 | |
Tssr30052 | 3 | 11 | + | TSS region | transcription start site region 30052 | |
Cpgi13408 | 3 | 460 | CpG island | CpG island 13408 | ||
Tssr30053 | 3 | 12 | + | TSS region | transcription start site region 30053 | |
Tssr30054 | 3 | 19 | + | TSS region | transcription start site region 30054 | |
Tssr30055 | 3 | 26 | + | TSS region | transcription start site region 30055 | |
Tssr30056 | 3 | 13 | + | TSS region | transcription start site region 30056 | |
Tssr30057 | 3 | 11 | + | TSS region | transcription start site region 30057 | |
Tssr30058 | 3 | 26 | + | TSS region | transcription start site region 30058 | |
Tssr30059 | 3 | 44 | + | TSS region | transcription start site region 30059 | |
Tssr30060 | 3 | 23 | + | TSS region | transcription start site region 30060 | |
Tssr30061 | 3 | 8 | + | TSS region | transcription start site region 30061 | |
Tssr30062 | 3 | 18 | + | TSS region | transcription start site region 30062 | |
Tssr30063 | 3 | 5 | + | TSS region | transcription start site region 30063 | |
Tssr34094 | 3 | 37 | - | TSS region | transcription start site region 34094 | |
Cpgi13409 | 3 | 387 | CpG island | CpG island 13409 | ||
Gm23269 | 3 | 106 | - | snRNA gene | predicted gene, 23269 | |
Tssr30064 | 3 | 46 | + | TSS region | transcription start site region 30064 | |
Gba | 3 | 6038 | + | protein coding gene | glucosidase, beta, acid | |
Tssr30065 | 3 | 13 | + | TSS region | transcription start site region 30065 | |
Tssr30066 | 3 | 16 | + | TSS region | transcription start site region 30066 | |
Tssr30067 | 3 | 17 | + | TSS region | transcription start site region 30067 | |
Tssr30068 | 3 | 27 | + | TSS region | transcription start site region 30068 | |
Tssr30069 | 3 | 41 | + | TSS region | transcription start site region 30069 | |
Mtx1 | 3 | 5260 | - | protein coding gene | metaxin 1 | |
Gm43737 | 3 | 2739 | + | unclassified gene | predicted gene 43737 | |
D3Nds20 | 3 | 188 | DNA segment | DNA segment, Chr 3, Nuffield Department of Surgery 20 | ||
Cpgi13410 | 3 | 1118 | CpG island | CpG island 13410 | ||
Tssr34095 | 3 | 31 | - | TSS region | transcription start site region 34095 |