Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:88559602-89770354

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424 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cia5a 3 87263147 to 89232787 1969640 QTL collagen induced arthritis QTL 5a
Ubqln4 3 88553758 to 88569725 15967 + protein coding gene ubiquilin 4
Tssr29962 3 88563184 to 88563221 37 + TSS region transcription start site region 29962
Tssr935 3 88563763 to 88563801 38 + TSS region transcription start site region 935
Tssr29963 3 88564447 to 88564459 12 + TSS region transcription start site region 29963
Tssr29964 3 88568238 to 88568265 27 + TSS region transcription start site region 29964
Tssr34051 3 88570464 to 88570481 17 - TSS region transcription start site region 34051
Tssr34052 3 88570483 to 88570495 12 - TSS region transcription start site region 34052
Tssr34053 3 88570527 to 88570532 5 - TSS region transcription start site region 34053
Tssr29965 3 88570598 to 88570637 39 + TSS region transcription start site region 29965
Tssr34054 3 88571856 to 88571863 7 - TSS region transcription start site region 34054
Tssr34055 3 88571888 to 88571899 11 - TSS region transcription start site region 34055
Tssr29966 3 88573247 to 88573253 6 + TSS region transcription start site region 29966
Tssr29967 3 88575759 to 88575770 11 + TSS region transcription start site region 29967
Tssr29968 3 88575795 to 88575810 15 + TSS region transcription start site region 29968
Tssr29969 3 88575825 to 88575852 27 + TSS region transcription start site region 29969
Tssr29970 3 88575893 to 88575934 41 + TSS region transcription start site region 29970
Gm10704 3 88576410 to 88577139 729 - pseudogene predicted pseudogene 10704
Tssr29971 3 88578009 to 88578040 31 + TSS region transcription start site region 29971
Tssr29972 3 88578506 to 88578513 7 + TSS region transcription start site region 29972
Cpgi13386 3 88579480 to 88579970 490 CpG island CpG island 13386
Ssr2 3 88579584 to 88588420 8836 + protein coding gene signal sequence receptor, beta
Tssr29973 3 88579602 to 88579727 125 + TSS region transcription start site region 29973
Tssr29974 3 88579857 to 88579864 7 + TSS region transcription start site region 29974
Tssr29975 3 88583765 to 88583783 18 + TSS region transcription start site region 29975
Tssr29976 3 88586888 to 88586901 13 + TSS region transcription start site region 29976
Tssr29977 3 88593090 to 88593113 23 + TSS region transcription start site region 29977
Tssr29978 3 88593118 to 88593142 24 + TSS region transcription start site region 29978
Tssr29979 3 88593169 to 88593187 18 + TSS region transcription start site region 29979
Tssr29980 3 88594093 to 88594107 14 + TSS region transcription start site region 29980
Arhgef2 3 88605966 to 88648052 42086 + protein coding gene rho/rac guanine nucleotide exchange factor (GEF) 2
Gm40090 3 88606665 to 88607219 554 - lncRNA gene predicted gene, 40090
Tssr29981 3 88607127 to 88607199 72 + TSS region transcription start site region 29981
Tssr29982 3 88607218 to 88607235 17 + TSS region transcription start site region 29982
Tssr34056 3 88607328 to 88607341 13 - TSS region transcription start site region 34056
Tssr29983 3 88607438 to 88607468 30 + TSS region transcription start site region 29983
Tssr29984 3 88607473 to 88607479 6 + TSS region transcription start site region 29984
Tssr29985 3 88607482 to 88607485 3 + TSS region transcription start site region 29985
Tssr29986 3 88607507 to 88607520 13 + TSS region transcription start site region 29986
Tssr29987 3 88607535 to 88607543 8 + TSS region transcription start site region 29987
Tssr29988 3 88607637 to 88607667 30 + TSS region transcription start site region 29988
Tssr29989 3 88607742 to 88607757 15 + TSS region transcription start site region 29989
Tssr29990 3 88609744 to 88609758 14 + TSS region transcription start site region 29990
Tssr29991 3 88611960 to 88611966 6 + TSS region transcription start site region 29991
Tssr29992 3 88615404 to 88615434 30 + TSS region transcription start site region 29992
Tssr29993 3 88615444 to 88615470 26 + TSS region transcription start site region 29993
Tssr29994 3 88616133 to 88616151 18 + TSS region transcription start site region 29994
Tssr29995 3 88616194 to 88616248 54 + TSS region transcription start site region 29995
Tssr29996 3 88616284 to 88616293 9 + TSS region transcription start site region 29996
Tssr936 3 88616423 to 88616438 15 + TSS region transcription start site region 936
Gm20652 3 88617908 to 88621110 3202 - antisense lncRNA gene predicted gene 20652
Tssr29997 3 88620432 to 88620440 8 + TSS region transcription start site region 29997
Cpgi13387 3 88620847 to 88622121 1274 CpG island CpG island 13387
Tssr29998 3 88621102 to 88621130 28 + TSS region transcription start site region 29998
Tssr29999 3 88621144 to 88621173 29 + TSS region transcription start site region 29999
Tssr30000 3 88621203 to 88621214 11 + TSS region transcription start site region 30000
Tssr30001 3 88621274 to 88621285 11 + TSS region transcription start site region 30001
Tssr30002 3 88621459 to 88621539 80 + TSS region transcription start site region 30002
Tssr30003 3 88621834 to 88621874 40 + TSS region transcription start site region 30003
Tssr30004 3 88621915 to 88621940 25 + TSS region transcription start site region 30004
Tssr34057 3 88622728 to 88622733 5 - TSS region transcription start site region 34057
Tssr34058 3 88623131 to 88623147 16 - TSS region transcription start site region 34058
Tssr30005 3 88625571 to 88625576 5 + TSS region transcription start site region 30005
Tssr30006 3 88626511 to 88626539 28 + TSS region transcription start site region 30006
Tssr30007 3 88629463 to 88629479 16 + TSS region transcription start site region 30007
Tssr30008 3 88629499 to 88629510 11 + TSS region transcription start site region 30008
Cpgi13388 3 88643966 to 88644207 241 CpG island CpG island 13388
Tssr30009 3 88644774 to 88644785 11 + TSS region transcription start site region 30009
Tssr30010 3 88646862 to 88646888 26 + TSS region transcription start site region 30010
Tssr30011 3 88646914 to 88646926 12 + TSS region transcription start site region 30011
Tssr30012 3 88647412 to 88647432 20 + TSS region transcription start site region 30012
Tssr30013 3 88647730 to 88647744 14 + TSS region transcription start site region 30013
Rxfp4 3 88651898 to 88653142 1244 - protein coding gene relaxin family peptide receptor 4
Gm43714 3 88685024 to 88686397 1373 - antisense lncRNA gene predicted gene 43714
Tssr30014 3 88685424 to 88685442 18 + TSS region transcription start site region 30014
Cpgi13389 3 88685451 to 88686686 1235 CpG island CpG island 13389
Tssr30015 3 88685785 to 88685796 11 + TSS region transcription start site region 30015
Tssr30016 3 88685802 to 88685852 50 + TSS region transcription start site region 30016
Khdc4 3 88685803 to 88712924 27121 + protein coding gene KH domain containing 4, pre-mRNA splicing factor
Gm25820 3 88693931 to 88694057 126 + snoRNA gene predicted gene, 25820
Tssr30017 3 88702114 to 88702119 5 + TSS region transcription start site region 30017
Gm25945 3 88707158 to 88707292 134 + snoRNA gene predicted gene, 25945
Cpgi13390 3 88716744 to 88717240 496 CpG island CpG island 13390
Tssr30018 3 88716838 to 88716883 45 + TSS region transcription start site region 30018
Rit1 3 88716841 to 88731048 14207 + protein coding gene Ras-like without CAAX 1
Tssr30019 3 88716884 to 88716905 21 + TSS region transcription start site region 30019
Tssr30020 3 88716916 to 88716921 5 + TSS region transcription start site region 30020
Gm17146 3 88722090 to 88722670 580 + antisense lncRNA gene predicted gene 17146
Gm10253 3 88738753 to 88739692 939 - unclassified gene predicted gene 10253
Syt11 3 88744699 to 88775159 30460 - protein coding gene synaptotagmin XI
Tssr34059 3 88744986 to 88744999 13 - TSS region transcription start site region 34059
Tssr34060 3 88745056 to 88745068 12 - TSS region transcription start site region 34060
Tssr34061 3 88748878 to 88748889 11 - TSS region transcription start site region 34061
Tssr34062 3 88752845 to 88752849 4 - TSS region transcription start site region 34062
Tssr34063 3 88755964 to 88755966 2 - TSS region transcription start site region 34063
Cpgi13391 3 88761815 to 88762014 199 CpG island CpG island 13391
Tssr34064 3 88762139 to 88762152 13 - TSS region transcription start site region 34064
Tssr34065 3 88762244 to 88762255 11 - TSS region transcription start site region 34065
Tssr34066 3 88772578 to 88772601 23 - TSS region transcription start site region 34066
5830417I10Rik 3 88775216 to 88825587 50371 + pseudogene RIKEN cDNA 5830417I10 gene
Cpgi13392 3 88775362 to 88775602 240 CpG island CpG island 13392
1500004A13Rik 3 88822010 to 88832487 10477 - lncRNA gene RIKEN cDNA 1500004A13 gene
Tssr34067 3 88832546 to 88832571 25 - TSS region transcription start site region 34067
Gon4l 3 88835231 to 88910103 74872 + protein coding gene gon-4-like (C.elegans)
Gm43713 3 88845025 to 88900001 54976 - antisense lncRNA gene predicted gene 43713
Gm23054 3 88862919 to 88863080 161 + snRNA gene predicted gene, 23054
Gm40091 3 88880917 to 88899936 19019 - lncRNA gene predicted gene, 40091
n-R5s197 3 88906510 to 88906628 118 + rRNA gene nuclear encoded rRNA 5S 197
Msto1 3 88909616 to 88913950 4334 - protein coding gene misato 1, mitochondrial distribution and morphology regulator
Cpgi13393 3 88913369 to 88914169 800 CpG island CpG island 13393
Tssr34068 3 88913800 to 88913811 11 - TSS region transcription start site region 34068
Tssr34069 3 88913885 to 88913948 63 - TSS region transcription start site region 34069
Tssr34070 3 88913977 to 88914004 27 - TSS region transcription start site region 34070
Tssr30021 3 88914001 to 88914035 34 + TSS region transcription start site region 30021
Tssr30022 3 88914048 to 88914067 19 + TSS region transcription start site region 30022
Dap3 3 88920803 to 88951181 30378 - protein coding gene death associated protein 3
Cpgi13394 3 88949544 to 88951271 1727 CpG island CpG island 13394
Tssr34071 3 88949937 to 88949989 52 - TSS region transcription start site region 34071
Tssr30023 3 88950031 to 88950082 51 + TSS region transcription start site region 30023
Tssr34072 3 88950153 to 88950190 37 - TSS region transcription start site region 34072
Tssr34073 3 88950192 to 88950221 29 - TSS region transcription start site region 34073
Tssr34074 3 88950281 to 88950321 40 - TSS region transcription start site region 34074
Tssr30024 3 88950350 to 88950395 45 + TSS region transcription start site region 30024
Tssr34075 3 88950401 to 88950432 31 - TSS region transcription start site region 34075
Tssr30025 3 88950429 to 88950446 17 + TSS region transcription start site region 30025
Tssr34076 3 88950476 to 88950584 108 - TSS region transcription start site region 34076
Ash1l 3 88950622 to 89079375 128753 + protein coding gene ASH1 like histone lysine methyltransferase
Tssr30026 3 88950638 to 88950668 30 + TSS region transcription start site region 30026
Tssr30027 3 88950671 to 88950692 21 + TSS region transcription start site region 30027
Tssr30028 3 88950701 to 88950749 48 + TSS region transcription start site region 30028
Tssr30029 3 88950788 to 88950852 64 + TSS region transcription start site region 30029
Tssr30030 3 88950859 to 88950872 13 + TSS region transcription start site region 30030
Tssr34077 3 88951090 to 88951115 25 - TSS region transcription start site region 34077
Tssr34078 3 88951119 to 88951133 14 - TSS region transcription start site region 34078
Tssr34079 3 88951146 to 88951213 67 - TSS region transcription start site region 34079
Gm26465 3 88970623 to 88970729 106 - snRNA gene predicted gene, 26465
Tssr30031 3 88970717 to 88970721 4 + TSS region transcription start site region 30031
Tssr30032 3 88984876 to 88984918 42 + TSS region transcription start site region 30032
D3Mit282 3 89014012 to 89014133 121 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 282
Tssr30033 3 89043241 to 89043278 37 + TSS region transcription start site region 30033
Gm24403 3 89048998 to 89049127 129 - snoRNA gene predicted gene, 24403
Gm43738 3 89081939 to 89101099 19160 - protein coding gene predicted gene 43738
Rusc1 3 89083981 to 89093311 9330 - protein coding gene RUN and SH3 domain containing 1
Cpgi13395 3 89087666 to 89087832 166 CpG island CpG island 13395
Tssr30034 3 89088768 to 89088804 36 + TSS region transcription start site region 30034
Cpgi13396 3 89089628 to 89091720 2092 CpG island CpG island 13396
Tssr34080 3 89089660 to 89089669 9 - TSS region transcription start site region 34080
Tssr34081 3 89089699 to 89089716 17 - TSS region transcription start site region 34081
Tssr34082 3 89089748 to 89089759 11 - TSS region transcription start site region 34082
Tssr34083 3 89089854 to 89089870 16 - TSS region transcription start site region 34083
Tssr34084 3 89089955 to 89090008 53 - TSS region transcription start site region 34084
Tssr34085 3 89091530 to 89091570 40 - TSS region transcription start site region 34085
Cpgi13397 3 89093055 to 89093524 469 CpG island CpG island 13397
Tssr34086 3 89093285 to 89093356 71 - TSS region transcription start site region 34086
Tssr34087 3 89093358 to 89093367 9 - TSS region transcription start site region 34087
Tssr34088 3 89093369 to 89093372 3 - TSS region transcription start site region 34088
Fdps 3 89093588 to 89101959 8371 - protein coding gene farnesyl diphosphate synthetase
Tssr34089 3 89094856 to 89094860 4 - TSS region transcription start site region 34089
Gm22935 3 89097910 to 89098013 103 - snRNA gene predicted gene, 22935
Cpgi13398 3 89101497 to 89102249 752 CpG island CpG island 13398
Tssr34090 3 89101858 to 89101898 40 - TSS region transcription start site region 34090
Tssr34091 3 89101907 to 89101969 62 - TSS region transcription start site region 34091
Tssr34092 3 89102017 to 89102020 3 - TSS region transcription start site region 34092
Tssr30035 3 89116707 to 89116711 4 + TSS region transcription start site region 30035
Gm29704 3 89116724 to 89116976 252 + pseudogene predicted gene, 29704
Cpgi13399 3 89132266 to 89132733 467 CpG island CpG island 13399
Tssr30036 3 89136116 to 89136123 7 + TSS region transcription start site region 30036
Pklr 3 89136129 to 89146600 10471 + protein coding gene pyruvate kinase liver and red blood cell
Tssr30037 3 89136133 to 89136183 50 + TSS region transcription start site region 30037
Tssr30038 3 89136573 to 89136593 20 + TSS region transcription start site region 30038
Tssr30039 3 89136608 to 89136629 21 + TSS region transcription start site region 30039
Tssr30040 3 89140213 to 89140230 17 + TSS region transcription start site region 30040
Tssr30041 3 89146071 to 89146075 4 + TSS region transcription start site region 30041
Tssr30042 3 89146145 to 89146154 9 + TSS region transcription start site region 30042
Hcn3 3 89146775 to 89160230 13455 - protein coding gene hyperpolarization-activated, cyclic nucleotide-gated K+ 3
Cpgi13400 3 89147740 to 89148348 608 CpG island CpG island 13400
Cpgi13401 3 89149818 to 89150036 218 CpG island CpG island 13401
Cpgi13402 3 89150332 to 89150486 154 CpG island CpG island 13402
Cpgi13403 3 89152671 to 89152966 295 CpG island CpG island 13403
Cpgi13404 3 89159608 to 89160514 906 CpG island CpG island 13404
Tssr34093 3 89160155 to 89160202 47 - TSS region transcription start site region 34093
Cpgi13405 3 89164602 to 89165354 752 CpG island CpG island 13405
Tssr30043 3 89164790 to 89164863 73 + TSS region transcription start site region 30043
Clk2 3 89164795 to 89176921 12126 + protein coding gene CDC-like kinase 2
Gm45927 3 89164795 to 89182770 17975 + protein coding gene predicted gene, 45927
Tssr30044 3 89167079 to 89167084 5 + TSS region transcription start site region 30044
Cpgi13406 3 89177330 to 89178050 720 CpG island CpG island 13406
Tssr30045 3 89177463 to 89177543 80 + TSS region transcription start site region 30045
Scamp3 3 89177473 to 89182765 5292 + protein coding gene secretory carrier membrane protein 3
Tssr30046 3 89177553 to 89177592 39 + TSS region transcription start site region 30046
Gm16069 3 89180755 to 89182293 1538 - antisense lncRNA gene predicted gene 16069
Cpgi13407 3 89183121 to 89183879 758 CpG island CpG island 13407
Tssr30047 3 89183131 to 89183207 76 + TSS region transcription start site region 30047
Fam189b 3 89183143 to 89189291 6148 + protein coding gene family with sequence similarity 189, member B
Tssr30048 3 89183399 to 89183410 11 + TSS region transcription start site region 30048
Tssr30049 3 89186712 to 89186721 9 + TSS region transcription start site region 30049
Tssr30050 3 89186733 to 89186744 11 + TSS region transcription start site region 30050
Tssr30051 3 89186746 to 89186757 11 + TSS region transcription start site region 30051
Tssr30052 3 89186776 to 89186787 11 + TSS region transcription start site region 30052
Cpgi13408 3 89187147 to 89187607 460 CpG island CpG island 13408