Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:88454553-88515222

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38 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sema4a 3 88435959 to 88461182 25223 - protein coding gene sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A
Tssr34022 3 88454820 to 88454831 11 - TSS region transcription start site region 34022
Tssr34023 3 88454832 to 88454853 21 - TSS region transcription start site region 34023
Tssr932 3 88454878 to 88454887 9 - TSS region transcription start site region 932
Tssr29951 3 88454951 to 88454968 17 + TSS region transcription start site region 29951
Tssr34024 3 88455142 to 88455166 24 - TSS region transcription start site region 34024
Tssr34025 3 88455173 to 88455192 19 - TSS region transcription start site region 34025
Tssr34026 3 88455302 to 88455311 9 - TSS region transcription start site region 34026
Tssr34027 3 88455330 to 88455347 17 - TSS region transcription start site region 34027
Tssr34028 3 88455692 to 88455707 15 - TSS region transcription start site region 34028
Tssr34029 3 88455726 to 88455733 7 - TSS region transcription start site region 34029
Tssr34030 3 88455735 to 88455788 53 - TSS region transcription start site region 34030
Tssr34031 3 88456397 to 88456441 44 - TSS region transcription start site region 34031
Tssr34032 3 88458852 to 88458899 47 - TSS region transcription start site region 34032
Tssr34033 3 88459021 to 88459043 22 - TSS region transcription start site region 34033
Tssr34034 3 88459047 to 88459074 27 - TSS region transcription start site region 34034
Tssr34035 3 88461196 to 88461226 30 - TSS region transcription start site region 34035
Tssr34036 3 88461303 to 88461314 11 - TSS region transcription start site region 34036
Gm40089 3 88462094 to 88466135 4041 - lncRNA gene predicted gene, 40089
Gm5979 3 88474584 to 88475154 570 + pseudogene predicted gene 5979
Lmna 3 88481148 to 88509932 28784 - protein coding gene lamin A
Tssr34037 3 88481907 to 88481915 8 - TSS region transcription start site region 34037
Cpgi13378 3 88482407 to 88482587 180 CpG island CpG island 13378
Tssr29952 3 88483332 to 88483382 50 + TSS region transcription start site region 29952
Cpgi13379 3 88484553 to 88485222 669 CpG island CpG island 13379
Cpgi13380 3 88492973 to 88493225 252 CpG island CpG island 13380
Tssr34038 3 88498561 to 88498646 85 - TSS region transcription start site region 34038
Cpgi13381 3 88502651 to 88503466 815 CpG island CpG island 13381
Tssr933 3 88503029 to 88503039 10 - TSS region transcription start site region 933
Tssr34039 3 88503061 to 88503067 6 - TSS region transcription start site region 34039
Tssr34040 3 88503187 to 88503323 136 - TSS region transcription start site region 34040
Tssr34041 3 88503331 to 88503350 19 - TSS region transcription start site region 34041
Tssr34042 3 88503598 to 88503614 16 - TSS region transcription start site region 34042
Tssr34043 3 88509943 to 88509992 49 - TSS region transcription start site region 34043
Cpgi13382 3 88509990 to 88510271 281 CpG island CpG island 13382
Tssr34044 3 88511110 to 88511123 13 - TSS region transcription start site region 34044
Tssr34045 3 88512604 to 88512620 16 - TSS region transcription start site region 34045
Tssr29953 3 88514044 to 88514067 23 + TSS region transcription start site region 29953