Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:88330669-91332127

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913 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cia5a 3 87263147 to 89232787 1969640 QTL collagen induced arthritis QTL 5a
hsh 3 87263147 to 90359778 3096631 heritable phenotypic marker hind shaker
Tmem79 3 88328653 to 88334433 5780 - protein coding gene transmembrane protein 79
Cpgi13370 3 88332503 to 88333408 905 CpG island CpG island 13370
Tssr34001 3 88334428 to 88334466 38 - TSS region transcription start site region 34001
Tssr34002 3 88334482 to 88334495 13 - TSS region transcription start site region 34002
BC038331 3 88334738 to 88336177 1439 unclassified gene cDNA sequence BC038331
D3Mit175 3 88334866 to 88335000 134 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 175
Cpgi13371 3 88335828 to 88336877 1049 CpG island CpG island 13371
Tssr34003 3 88336165 to 88336198 33 - TSS region transcription start site region 34003
Tssr29942 3 88336256 to 88336304 48 + TSS region transcription start site region 29942
Smg5 3 88336260 to 88362337 26077 + protein coding gene Smg-5 homolog, nonsense mediated mRNA decay factor (C. elegans)
Tssr34004 3 88336498 to 88336526 28 - TSS region transcription start site region 34004
Tssr29943 3 88337843 to 88337853 10 + TSS region transcription start site region 29943
Tssr29944 3 88340277 to 88340281 4 + TSS region transcription start site region 29944
Tssr29945 3 88351097 to 88351112 15 + TSS region transcription start site region 29945
Cpgi13372 3 88352960 to 88353140 180 CpG island CpG island 13372
Tssr29946 3 88358282 to 88358295 13 + TSS region transcription start site region 29946
Cpgi13373 3 88364482 to 88364723 241 CpG island CpG island 13373
Tssr29947 3 88364548 to 88364606 58 + TSS region transcription start site region 29947
Paqr6 3 88364584 to 88368541 3957 + protein coding gene progestin and adipoQ receptor family member VI
Cpgi13374 3 88365713 to 88366378 665 CpG island CpG island 13374
Bglap3 3 88368616 to 88372741 4125 - protein coding gene bone gamma-carboxyglutamate protein 3
Tssr34005 3 88369730 to 88369735 5 - TSS region transcription start site region 34005
Tssr34006 3 88372740 to 88372745 5 - TSS region transcription start site region 34006
Gm21956 3 88376023 to 88377075 1052 + pseudogene predicted gene, 21956
Del(3Bglap2-Bglap)1Vari 3 88377736 to 88384464 6728 cytogenetic marker deletion, Chr3, Bart Williams
Bglap2 3 88377736 to 88378699 963 - protein coding gene bone gamma-carboxyglutamate protein 2
Tssr34007 3 88378740 to 88378753 13 - TSS region transcription start site region 34007
Gm6821 3 88381772 to 88382844 1072 + pseudogene predicted gene 6821
Bglap 3 88383501 to 88384464 963 - protein coding gene bone gamma carboxyglutamate protein
Tssr34008 3 88384453 to 88384471 18 - TSS region transcription start site region 34008
Pmf1 3 88394143 to 88410331 16188 - protein coding gene polyamine-modulated factor 1
Tssr34009 3 88395954 to 88395998 44 - TSS region transcription start site region 34009
Cpgi13375 3 88409801 to 88410432 631 CpG island CpG island 13375
Tssr34010 3 88410067 to 88410094 27 - TSS region transcription start site region 34010
Tssr34011 3 88410295 to 88410351 56 - TSS region transcription start site region 34011
Tssr34012 3 88410365 to 88410370 5 - TSS region transcription start site region 34012
Tssr34013 3 88410377 to 88410388 11 - TSS region transcription start site region 34013
Slc25a44 3 88410498 to 88425139 14641 - protein coding gene solute carrier family 25, member 44
Cpgi13376 3 88424752 to 88425243 491 CpG island CpG island 13376
Tssr29948 3 88424794 to 88424800 6 + TSS region transcription start site region 29948
Gm33513 3 88425080 to 88428668 3588 + lncRNA gene predicted gene, 33513
Tssr34014 3 88425094 to 88425139 45 - TSS region transcription start site region 34014
Gm42814 3 88428936 to 88429395 459 + pseudogene predicted gene 42814
Sema4a 3 88435959 to 88461182 25223 - protein coding gene sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A
Cpgi13377 3 88436606 to 88437150 544 CpG island CpG island 13377
Mir7011 3 88440879 to 88440951 72 - miRNA gene microRNA 7011
Tssr34015 3 88440999 to 88441006 7 - TSS region transcription start site region 34015
Tssr29949 3 88441105 to 88441136 31 + TSS region transcription start site region 29949
Tssr29950 3 88446791 to 88446805 14 + TSS region transcription start site region 29950
Tssr34016 3 88447179 to 88447184 5 - TSS region transcription start site region 34016
Tssr34017 3 88452368 to 88452401 33 - TSS region transcription start site region 34017
Tssr34018 3 88453388 to 88453401 13 - TSS region transcription start site region 34018
Tssr34019 3 88453405 to 88453412 7 - TSS region transcription start site region 34019
Tssr34020 3 88453419 to 88453426 7 - TSS region transcription start site region 34020
Tssr34021 3 88453473 to 88453479 6 - TSS region transcription start site region 34021
Tssr34022 3 88454820 to 88454831 11 - TSS region transcription start site region 34022
Tssr34023 3 88454832 to 88454853 21 - TSS region transcription start site region 34023
Tssr932 3 88454878 to 88454887 9 - TSS region transcription start site region 932
Tssr29951 3 88454951 to 88454968 17 + TSS region transcription start site region 29951
Tssr34024 3 88455142 to 88455166 24 - TSS region transcription start site region 34024
Tssr34025 3 88455173 to 88455192 19 - TSS region transcription start site region 34025
Tssr34026 3 88455302 to 88455311 9 - TSS region transcription start site region 34026
Tssr34027 3 88455330 to 88455347 17 - TSS region transcription start site region 34027
Tssr34028 3 88455692 to 88455707 15 - TSS region transcription start site region 34028
Tssr34029 3 88455726 to 88455733 7 - TSS region transcription start site region 34029
Tssr34030 3 88455735 to 88455788 53 - TSS region transcription start site region 34030
Tssr34031 3 88456397 to 88456441 44 - TSS region transcription start site region 34031
Tssr34032 3 88458852 to 88458899 47 - TSS region transcription start site region 34032
Tssr34033 3 88459021 to 88459043 22 - TSS region transcription start site region 34033
Tssr34034 3 88459047 to 88459074 27 - TSS region transcription start site region 34034
Tssr34035 3 88461196 to 88461226 30 - TSS region transcription start site region 34035
Tssr34036 3 88461303 to 88461314 11 - TSS region transcription start site region 34036
Gm40089 3 88462094 to 88466135 4041 - lncRNA gene predicted gene, 40089
Gm5979 3 88474584 to 88475154 570 + pseudogene predicted gene 5979
Lmna 3 88481148 to 88509932 28784 - protein coding gene lamin A
Tssr34037 3 88481907 to 88481915 8 - TSS region transcription start site region 34037
Cpgi13378 3 88482407 to 88482587 180 CpG island CpG island 13378
Tssr29952 3 88483332 to 88483382 50 + TSS region transcription start site region 29952
Cpgi13379 3 88484553 to 88485222 669 CpG island CpG island 13379
Cpgi13380 3 88492973 to 88493225 252 CpG island CpG island 13380
Tssr34038 3 88498561 to 88498646 85 - TSS region transcription start site region 34038
Cpgi13381 3 88502651 to 88503466 815 CpG island CpG island 13381
Tssr933 3 88503029 to 88503039 10 - TSS region transcription start site region 933
Tssr34039 3 88503061 to 88503067 6 - TSS region transcription start site region 34039
Tssr34040 3 88503187 to 88503323 136 - TSS region transcription start site region 34040
Tssr34041 3 88503331 to 88503350 19 - TSS region transcription start site region 34041
Tssr34042 3 88503598 to 88503614 16 - TSS region transcription start site region 34042
Tssr34043 3 88509943 to 88509992 49 - TSS region transcription start site region 34043
Cpgi13382 3 88509990 to 88510271 281 CpG island CpG island 13382
Tssr34044 3 88511110 to 88511123 13 - TSS region transcription start site region 34044
Tssr34045 3 88512604 to 88512620 16 - TSS region transcription start site region 34045
Tssr29953 3 88514044 to 88514067 23 + TSS region transcription start site region 29953
Gm37584 3 88526066 to 88527355 1289 - lincRNA gene predicted gene, 37584
Gm38618 3 88529266 to 88531792 2526 - lncRNA gene predicted gene, 38618
Cpgi13383 3 88531248 to 88533374 2126 CpG island CpG island 13383
Tssr34046 3 88531381 to 88531393 12 - TSS region transcription start site region 34046
Tssr29954 3 88531494 to 88531527 33 + TSS region transcription start site region 29954
Tssr29955 3 88531529 to 88531545 16 + TSS region transcription start site region 29955
Tssr29956 3 88531904 to 88531995 91 + TSS region transcription start site region 29956
Tssr29957 3 88532314 to 88532396 82 + TSS region transcription start site region 29957
Mex3a 3 88532395 to 88541394 8999 + protein coding gene mex3 RNA binding family member A
Tssr29958 3 88532712 to 88532765 53 + TSS region transcription start site region 29958
Cpgi13384 3 88536119 to 88537115 996 CpG island CpG island 13384
Mir1905 3 88536301 to 88536382 81 - miRNA gene microRNA 1905
Tssr29959 3 88537330 to 88537338 8 + TSS region transcription start site region 29959
Tssr29960 3 88537364 to 88537377 13 + TSS region transcription start site region 29960
Rab25 3 88542029 to 88548279 6250 - protein coding gene RAB25, member RAS oncogene family
Tssr34047 3 88548264 to 88548311 47 - TSS region transcription start site region 34047
Lamtor2 3 88549819 to 88552927 3108 - protein coding gene late endosomal/lysosomal adaptor, MAPK and MTOR activator 2
Cpgi13385 3 88552389 to 88554422 2033 CpG island CpG island 13385
Tssr34048 3 88552843 to 88552855 12 - TSS region transcription start site region 34048
Tssr34049 3 88552861 to 88552958 97 - TSS region transcription start site region 34049
Tssr934 3 88553707 to 88553736 29 + TSS region transcription start site region 934
Tssr29961 3 88553754 to 88553806 52 + TSS region transcription start site region 29961
Ubqln4 3 88553758 to 88569725 15967 + protein coding gene ubiquilin 4
Tssr34050 3 88554445 to 88554460 15 - TSS region transcription start site region 34050
Tssr29962 3 88563184 to 88563221 37 + TSS region transcription start site region 29962
Tssr935 3 88563763 to 88563801 38 + TSS region transcription start site region 935
Tssr29963 3 88564447 to 88564459 12 + TSS region transcription start site region 29963
Tssr29964 3 88568238 to 88568265 27 + TSS region transcription start site region 29964
Tssr34051 3 88570464 to 88570481 17 - TSS region transcription start site region 34051
Tssr34052 3 88570483 to 88570495 12 - TSS region transcription start site region 34052
Tssr34053 3 88570527 to 88570532 5 - TSS region transcription start site region 34053
Tssr29965 3 88570598 to 88570637 39 + TSS region transcription start site region 29965
Tssr34054 3 88571856 to 88571863 7 - TSS region transcription start site region 34054
Tssr34055 3 88571888 to 88571899 11 - TSS region transcription start site region 34055
Tssr29966 3 88573247 to 88573253 6 + TSS region transcription start site region 29966
Tssr29967 3 88575759 to 88575770 11 + TSS region transcription start site region 29967
Tssr29968 3 88575795 to 88575810 15 + TSS region transcription start site region 29968
Tssr29969 3 88575825 to 88575852 27 + TSS region transcription start site region 29969
Tssr29970 3 88575893 to 88575934 41 + TSS region transcription start site region 29970
Gm10704 3 88576410 to 88577139 729 - pseudogene predicted pseudogene 10704
Tssr29971 3 88578009 to 88578040 31 + TSS region transcription start site region 29971
Tssr29972 3 88578506 to 88578513 7 + TSS region transcription start site region 29972
Cpgi13386 3 88579480 to 88579970 490 CpG island CpG island 13386
Ssr2 3 88579584 to 88588420 8836 + protein coding gene signal sequence receptor, beta
Tssr29973 3 88579602 to 88579727 125 + TSS region transcription start site region 29973
Tssr29974 3 88579857 to 88579864 7 + TSS region transcription start site region 29974
Tssr29975 3 88583765 to 88583783 18 + TSS region transcription start site region 29975
Tssr29976 3 88586888 to 88586901 13 + TSS region transcription start site region 29976
Tssr29977 3 88593090 to 88593113 23 + TSS region transcription start site region 29977
Tssr29978 3 88593118 to 88593142 24 + TSS region transcription start site region 29978
Tssr29979 3 88593169 to 88593187 18 + TSS region transcription start site region 29979
Tssr29980 3 88594093 to 88594107 14 + TSS region transcription start site region 29980
Arhgef2 3 88605966 to 88648052 42086 + protein coding gene rho/rac guanine nucleotide exchange factor (GEF) 2
Gm40090 3 88606665 to 88607219 554 - lncRNA gene predicted gene, 40090
Tssr29981 3 88607127 to 88607199 72 + TSS region transcription start site region 29981
Tssr29982 3 88607218 to 88607235 17 + TSS region transcription start site region 29982
Tssr34056 3 88607328 to 88607341 13 - TSS region transcription start site region 34056
Tssr29983 3 88607438 to 88607468 30 + TSS region transcription start site region 29983
Tssr29984 3 88607473 to 88607479 6 + TSS region transcription start site region 29984
Tssr29985 3 88607482 to 88607485 3 + TSS region transcription start site region 29985
Tssr29986 3 88607507 to 88607520 13 + TSS region transcription start site region 29986
Tssr29987 3 88607535 to 88607543 8 + TSS region transcription start site region 29987
Tssr29988 3 88607637 to 88607667 30 + TSS region transcription start site region 29988
Tssr29989 3 88607742 to 88607757 15 + TSS region transcription start site region 29989
Tssr29990 3 88609744 to 88609758 14 + TSS region transcription start site region 29990
Tssr29991 3 88611960 to 88611966 6 + TSS region transcription start site region 29991
Tssr29992 3 88615404 to 88615434 30 + TSS region transcription start site region 29992
Tssr29993 3 88615444 to 88615470 26 + TSS region transcription start site region 29993
Tssr29994 3 88616133 to 88616151 18 + TSS region transcription start site region 29994
Tssr29995 3 88616194 to 88616248 54 + TSS region transcription start site region 29995
Tssr29996 3 88616284 to 88616293 9 + TSS region transcription start site region 29996
Tssr936 3 88616423 to 88616438 15 + TSS region transcription start site region 936
Gm20652 3 88617908 to 88621110 3202 - antisense lncRNA gene predicted gene 20652
Tssr29997 3 88620432 to 88620440 8 + TSS region transcription start site region 29997
Cpgi13387 3 88620847 to 88622121 1274 CpG island CpG island 13387
Tssr29998 3 88621102 to 88621130 28 + TSS region transcription start site region 29998
Tssr29999 3 88621144 to 88621173 29 + TSS region transcription start site region 29999
Tssr30000 3 88621203 to 88621214 11 + TSS region transcription start site region 30000
Tssr30001 3 88621274 to 88621285 11 + TSS region transcription start site region 30001
Tssr30002 3 88621459 to 88621539 80 + TSS region transcription start site region 30002
Tssr30003 3 88621834 to 88621874 40 + TSS region transcription start site region 30003
Tssr30004 3 88621915 to 88621940 25 + TSS region transcription start site region 30004
Tssr34057 3 88622728 to 88622733 5 - TSS region transcription start site region 34057
Tssr34058 3 88623131 to 88623147 16 - TSS region transcription start site region 34058
Tssr30005 3 88625571 to 88625576 5 + TSS region transcription start site region 30005
Tssr30006 3 88626511 to 88626539 28 + TSS region transcription start site region 30006
Tssr30007 3 88629463 to 88629479 16 + TSS region transcription start site region 30007
Tssr30008 3 88629499 to 88629510 11 + TSS region transcription start site region 30008
Cpgi13388 3 88643966 to 88644207 241 CpG island CpG island 13388
Tssr30009 3 88644774 to 88644785 11 + TSS region transcription start site region 30009
Tssr30010 3 88646862 to 88646888 26 + TSS region transcription start site region 30010
Tssr30011 3 88646914 to 88646926 12 + TSS region transcription start site region 30011
Tssr30012 3 88647412 to 88647432 20 + TSS region transcription start site region 30012
Tssr30013 3 88647730 to 88647744 14 + TSS region transcription start site region 30013
Rxfp4 3 88651898 to 88653142 1244 - protein coding gene relaxin family peptide receptor 4
Gm43714 3 88685024 to 88686397 1373 - antisense lncRNA gene predicted gene 43714
Tssr30014 3 88685424 to 88685442 18 + TSS region transcription start site region 30014
Cpgi13389 3 88685451 to 88686686 1235 CpG island CpG island 13389
Tssr30015 3 88685785 to 88685796 11 + TSS region transcription start site region 30015
Tssr30016 3 88685802 to 88685852 50 + TSS region transcription start site region 30016
Khdc4 3 88685803 to 88712924 27121 + protein coding gene KH domain containing 4, pre-mRNA splicing factor
Gm25820 3 88693931 to 88694057 126 + snoRNA gene predicted gene, 25820
Tssr30017 3 88702114 to 88702119 5 + TSS region transcription start site region 30017
Gm25945 3 88707158 to 88707292 134 + snoRNA gene predicted gene, 25945
Cpgi13390 3 88716744 to 88717240 496 CpG island CpG island 13390
Tssr30018 3 88716838 to 88716883 45 + TSS region transcription start site region 30018