Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:88221165-88451198

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85 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm3764 3 88206813 to 88229959 23146 + lincRNA gene predicted gene 3764
4931402H11Rik 3 88227410 to 88232335 4925 unclassified non-coding RNA gene RIKEN cDNA 4931402H11 gene
Tssr29929 3 88227434 to 88227438 4 + TSS region transcription start site region 29929
Tssr29930 3 88228329 to 88228340 11 + TSS region transcription start site region 29930
Cpgi13366 3 88240735 to 88241875 1140 CpG island CpG island 13366
Rhbg 3 88242874 to 88254709 11835 - protein coding gene Rhesus blood group-associated B glycoprotein
Gm38392 3 88243380 to 88287210 43830 - protein coding gene predicted gene, 38392
Cpgi13367 3 88245854 to 88246065 211 CpG island CpG island 13367
Cpgi13368 3 88254322 to 88254898 576 CpG island CpG island 13368
Tssr33992 3 88254675 to 88254689 14 - TSS region transcription start site region 33992
Tssr33993 3 88254706 to 88254722 16 - TSS region transcription start site region 33993
Tssr33994 3 88276901 to 88276921 20 - TSS region transcription start site region 33994
Tssr29931 3 88277063 to 88277081 18 + TSS region transcription start site region 29931
Tssr29932 3 88278448 to 88278459 11 + TSS region transcription start site region 29932
Tssr33995 3 88281270 to 88281286 16 - TSS region transcription start site region 33995
Tssr931 3 88282037 to 88282044 7 + TSS region transcription start site region 931
Tsacc 3 88282757 to 88296999 14242 - protein coding gene TSSK6 activating co-chaperone
Gm37116 3 88284607 to 88284753 146 - pseudogene predicted gene, 37116
Tssr33996 3 88296398 to 88296410 12 - TSS region transcription start site region 33996
Cpgi13369 3 88296586 to 88297824 1238 CpG island CpG island 13369
Tssr33997 3 88296590 to 88296610 20 - TSS region transcription start site region 33997
Tssr29933 3 88296643 to 88296672 29 + TSS region transcription start site region 29933
Tssr33998 3 88296850 to 88296909 59 - TSS region transcription start site region 33998
Tssr33999 3 88296925 to 88296939 14 - TSS region transcription start site region 33999
Tssr34000 3 88296979 to 88296988 9 - TSS region transcription start site region 34000
Tssr29934 3 88296981 to 88296992 11 + TSS region transcription start site region 29934
Tssr29935 3 88297115 to 88297144 29 + TSS region transcription start site region 29935
Cct3 3 88297135 to 88321766 24631 + protein coding gene chaperonin containing Tcp1, subunit 3 (gamma)
Tssr29936 3 88297147 to 88297193 46 + TSS region transcription start site region 29936
Tssr29937 3 88297196 to 88297218 22 + TSS region transcription start site region 29937
Glmp 3 88325023 to 88328631 3608 + protein coding gene glycosylated lysosomal membrane protein
Tssr29938 3 88325030 to 88325075 45 + TSS region transcription start site region 29938
Tssr29939 3 88325078 to 88325080 2 + TSS region transcription start site region 29939
Tssr29940 3 88326162 to 88326180 18 + TSS region transcription start site region 29940
Tssr29941 3 88326413 to 88326444 31 + TSS region transcription start site region 29941
Tmem79 3 88328653 to 88334433 5780 - protein coding gene transmembrane protein 79
Cpgi13370 3 88332503 to 88333408 905 CpG island CpG island 13370
Tssr34001 3 88334428 to 88334466 38 - TSS region transcription start site region 34001
Tssr34002 3 88334482 to 88334495 13 - TSS region transcription start site region 34002
BC038331 3 88334738 to 88336177 1439 unclassified gene cDNA sequence BC038331
D3Mit175 3 88334866 to 88335000 134 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 175
Cpgi13371 3 88335828 to 88336877 1049 CpG island CpG island 13371
Tssr34003 3 88336165 to 88336198 33 - TSS region transcription start site region 34003
Tssr29942 3 88336256 to 88336304 48 + TSS region transcription start site region 29942
Smg5 3 88336260 to 88362337 26077 + protein coding gene Smg-5 homolog, nonsense mediated mRNA decay factor (C. elegans)
Tssr34004 3 88336498 to 88336526 28 - TSS region transcription start site region 34004
Tssr29943 3 88337843 to 88337853 10 + TSS region transcription start site region 29943
Tssr29944 3 88340277 to 88340281 4 + TSS region transcription start site region 29944
Tssr29945 3 88351097 to 88351112 15 + TSS region transcription start site region 29945
Cpgi13372 3 88352960 to 88353140 180 CpG island CpG island 13372
Tssr29946 3 88358282 to 88358295 13 + TSS region transcription start site region 29946
Cpgi13373 3 88364482 to 88364723 241 CpG island CpG island 13373
Tssr29947 3 88364548 to 88364606 58 + TSS region transcription start site region 29947
Paqr6 3 88364584 to 88368541 3957 + protein coding gene progestin and adipoQ receptor family member VI
Cpgi13374 3 88365713 to 88366378 665 CpG island CpG island 13374
Bglap3 3 88368616 to 88372741 4125 - protein coding gene bone gamma-carboxyglutamate protein 3
Tssr34005 3 88369730 to 88369735 5 - TSS region transcription start site region 34005
Tssr34006 3 88372740 to 88372745 5 - TSS region transcription start site region 34006
Gm21956 3 88376023 to 88377075 1052 + pseudogene predicted gene, 21956
Bglap2 3 88377736 to 88378699 963 - protein coding gene bone gamma-carboxyglutamate protein 2
Del(3Bglap2-Bglap)1Vari 3 88377736 to 88384464 6728 cytogenetic marker deletion, Chr3, Bart Williams
Tssr34007 3 88378740 to 88378753 13 - TSS region transcription start site region 34007
Gm6821 3 88381772 to 88382844 1072 + pseudogene predicted gene 6821
Bglap 3 88383501 to 88384464 963 - protein coding gene bone gamma carboxyglutamate protein
Tssr34008 3 88384453 to 88384471 18 - TSS region transcription start site region 34008
Pmf1 3 88394143 to 88410331 16188 - protein coding gene polyamine-modulated factor 1
Tssr34009 3 88395954 to 88395998 44 - TSS region transcription start site region 34009
Cpgi13375 3 88409801 to 88410432 631 CpG island CpG island 13375
Tssr34010 3 88410067 to 88410094 27 - TSS region transcription start site region 34010
Tssr34011 3 88410295 to 88410351 56 - TSS region transcription start site region 34011
Tssr34012 3 88410365 to 88410370 5 - TSS region transcription start site region 34012
Tssr34013 3 88410377 to 88410388 11 - TSS region transcription start site region 34013
Slc25a44 3 88410498 to 88425139 14641 - protein coding gene solute carrier family 25, member 44
Cpgi13376 3 88424752 to 88425243 491 CpG island CpG island 13376
Tssr29948 3 88424794 to 88424800 6 + TSS region transcription start site region 29948
Gm33513 3 88425080 to 88428668 3588 + lncRNA gene predicted gene, 33513
Tssr34014 3 88425094 to 88425139 45 - TSS region transcription start site region 34014
Gm42814 3 88428936 to 88429395 459 + pseudogene predicted gene 42814
Sema4a 3 88435959 to 88461182 25223 - protein coding gene sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A
Cpgi13377 3 88436606 to 88437150 544 CpG island CpG island 13377
Mir7011 3 88440879 to 88440951 72 - miRNA gene microRNA 7011
Tssr34015 3 88440999 to 88441006 7 - TSS region transcription start site region 34015
Tssr29949 3 88441105 to 88441136 31 + TSS region transcription start site region 29949
Tssr29950 3 88446791 to 88446805 14 + TSS region transcription start site region 29950
Tssr34016 3 88447179 to 88447184 5 - TSS region transcription start site region 34016