Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:88143899-90492965

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837 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
hsh 3 87263147 to 90359778 3096631 heritable phenotypic marker hind shaker
Cia5a 3 87263147 to 89232787 1969640 QTL collagen induced arthritis QTL 5a
Mef2d 3 88142372 to 88172086 29714 + protein coding gene myocyte enhancer factor 2D
Tssr29907 3 88144332 to 88144340 8 + TSS region transcription start site region 29907
Tssr29908 3 88145582 to 88145600 18 + TSS region transcription start site region 29908
Tssr29909 3 88158079 to 88158094 15 + TSS region transcription start site region 29909
Tssr29910 3 88159724 to 88159731 7 + TSS region transcription start site region 29910
Tssr33990 3 88161304 to 88161324 20 - TSS region transcription start site region 33990
Tssr29911 3 88163043 to 88163053 10 + TSS region transcription start site region 29911
Tssr29912 3 88167572 to 88167588 16 + TSS region transcription start site region 29912
Tssr29913 3 88167594 to 88167654 60 + TSS region transcription start site region 29913
Tssr29914 3 88170324 to 88170336 12 + TSS region transcription start site region 29914
1700113A16Rik 3 88171560 to 88177785 6225 - antisense lncRNA gene RIKEN cDNA 1700113A16 gene
Cpgi13362 3 88177544 to 88178371 827 CpG island CpG island 13362
Tssr33991 3 88177671 to 88177783 112 - TSS region transcription start site region 33991
D3Mit74 3 88187246 to 88187394 148 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 74
AI849053 3 88199102 to 88204595 5493 - lincRNA gene expressed sequence AI849053
Tssr29915 3 88200255 to 88200269 14 + TSS region transcription start site region 29915
Tssr29916 3 88200270 to 88200279 9 + TSS region transcription start site region 29916
Tssr29917 3 88200285 to 88200318 33 + TSS region transcription start site region 29917
Cpgi13363 3 88200298 to 88201591 1293 CpG island CpG island 13363
Tssr29918 3 88200323 to 88200348 25 + TSS region transcription start site region 29918
Tssr29919 3 88200607 to 88200629 22 + TSS region transcription start site region 29919
AW047730 3 88200623 to 88203481 2858 + unclassified non-coding RNA gene expressed sequence AW047730
Tssr29920 3 88206525 to 88206537 12 + TSS region transcription start site region 29920
Tssr29921 3 88206786 to 88206824 38 + TSS region transcription start site region 29921
Gm3764 3 88206813 to 88229959 23146 + lincRNA gene predicted gene 3764
Tssr29922 3 88207100 to 88207135 35 + TSS region transcription start site region 29922
Cpgi13364 3 88207218 to 88207584 366 CpG island CpG island 13364
Tssr29923 3 88207255 to 88207305 50 + TSS region transcription start site region 29923
Tssr29924 3 88207308 to 88207328 20 + TSS region transcription start site region 29924
Tssr29925 3 88212739 to 88212771 32 + TSS region transcription start site region 29925
Cpgi13365 3 88214387 to 88216175 1788 CpG island CpG island 13365
Tssr29926 3 88214474 to 88214491 17 + TSS region transcription start site region 29926
Mir3093 3 88215171 to 88215257 86 + miRNA gene microRNA 3093
Gm25641 3 88215589 to 88215696 107 - miRNA gene predicted gene, 25641
Mir9-1 3 88215598 to 88215686 88 + miRNA gene microRNA 9-1
Tssr29927 3 88215672 to 88215680 8 + TSS region transcription start site region 29927
Tssr29928 3 88218241 to 88218246 5 + TSS region transcription start site region 29928
4931402H11Rik 3 88227410 to 88232335 4925 unclassified non-coding RNA gene RIKEN cDNA 4931402H11 gene
Tssr29929 3 88227434 to 88227438 4 + TSS region transcription start site region 29929
Tssr29930 3 88228329 to 88228340 11 + TSS region transcription start site region 29930
Cpgi13366 3 88240735 to 88241875 1140 CpG island CpG island 13366
Rhbg 3 88242874 to 88254709 11835 - protein coding gene Rhesus blood group-associated B glycoprotein
Gm38392 3 88243380 to 88287210 43830 - protein coding gene predicted gene, 38392
Cpgi13367 3 88245854 to 88246065 211 CpG island CpG island 13367
Cpgi13368 3 88254322 to 88254898 576 CpG island CpG island 13368
Tssr33992 3 88254675 to 88254689 14 - TSS region transcription start site region 33992
Tssr33993 3 88254706 to 88254722 16 - TSS region transcription start site region 33993
Tssr33994 3 88276901 to 88276921 20 - TSS region transcription start site region 33994
Tssr29931 3 88277063 to 88277081 18 + TSS region transcription start site region 29931
Tssr29932 3 88278448 to 88278459 11 + TSS region transcription start site region 29932
Tssr33995 3 88281270 to 88281286 16 - TSS region transcription start site region 33995
Tssr931 3 88282037 to 88282044 7 + TSS region transcription start site region 931
Tsacc 3 88282757 to 88296999 14242 - protein coding gene TSSK6 activating co-chaperone
Gm37116 3 88284607 to 88284753 146 - pseudogene predicted gene, 37116
Tssr33996 3 88296398 to 88296410 12 - TSS region transcription start site region 33996
Cpgi13369 3 88296586 to 88297824 1238 CpG island CpG island 13369
Tssr33997 3 88296590 to 88296610 20 - TSS region transcription start site region 33997
Tssr29933 3 88296643 to 88296672 29 + TSS region transcription start site region 29933
Tssr33998 3 88296850 to 88296909 59 - TSS region transcription start site region 33998
Tssr33999 3 88296925 to 88296939 14 - TSS region transcription start site region 33999
Tssr34000 3 88296979 to 88296988 9 - TSS region transcription start site region 34000
Tssr29934 3 88296981 to 88296992 11 + TSS region transcription start site region 29934
Tssr29935 3 88297115 to 88297144 29 + TSS region transcription start site region 29935
Cct3 3 88297135 to 88321766 24631 + protein coding gene chaperonin containing Tcp1, subunit 3 (gamma)
Tssr29936 3 88297147 to 88297193 46 + TSS region transcription start site region 29936
Tssr29937 3 88297196 to 88297218 22 + TSS region transcription start site region 29937
Glmp 3 88325023 to 88328631 3608 + protein coding gene glycosylated lysosomal membrane protein
Tssr29938 3 88325030 to 88325075 45 + TSS region transcription start site region 29938
Tssr29939 3 88325078 to 88325080 2 + TSS region transcription start site region 29939
Tssr29940 3 88326162 to 88326180 18 + TSS region transcription start site region 29940
Tssr29941 3 88326413 to 88326444 31 + TSS region transcription start site region 29941
Tmem79 3 88328653 to 88334433 5780 - protein coding gene transmembrane protein 79
Cpgi13370 3 88332503 to 88333408 905 CpG island CpG island 13370
Tssr34001 3 88334428 to 88334466 38 - TSS region transcription start site region 34001
Tssr34002 3 88334482 to 88334495 13 - TSS region transcription start site region 34002
BC038331 3 88334738 to 88336177 1439 unclassified gene cDNA sequence BC038331
D3Mit175 3 88334866 to 88335000 134 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 175
Cpgi13371 3 88335828 to 88336877 1049 CpG island CpG island 13371
Tssr34003 3 88336165 to 88336198 33 - TSS region transcription start site region 34003
Tssr29942 3 88336256 to 88336304 48 + TSS region transcription start site region 29942
Smg5 3 88336260 to 88362337 26077 + protein coding gene Smg-5 homolog, nonsense mediated mRNA decay factor (C. elegans)
Tssr34004 3 88336498 to 88336526 28 - TSS region transcription start site region 34004
Tssr29943 3 88337843 to 88337853 10 + TSS region transcription start site region 29943
Tssr29944 3 88340277 to 88340281 4 + TSS region transcription start site region 29944
Tssr29945 3 88351097 to 88351112 15 + TSS region transcription start site region 29945
Cpgi13372 3 88352960 to 88353140 180 CpG island CpG island 13372
Tssr29946 3 88358282 to 88358295 13 + TSS region transcription start site region 29946
Cpgi13373 3 88364482 to 88364723 241 CpG island CpG island 13373
Tssr29947 3 88364548 to 88364606 58 + TSS region transcription start site region 29947
Paqr6 3 88364584 to 88368541 3957 + protein coding gene progestin and adipoQ receptor family member VI
Cpgi13374 3 88365713 to 88366378 665 CpG island CpG island 13374
Bglap3 3 88368616 to 88372741 4125 - protein coding gene bone gamma-carboxyglutamate protein 3
Tssr34005 3 88369730 to 88369735 5 - TSS region transcription start site region 34005
Tssr34006 3 88372740 to 88372745 5 - TSS region transcription start site region 34006
Gm21956 3 88376023 to 88377075 1052 + pseudogene predicted gene, 21956
Bglap2 3 88377736 to 88378699 963 - protein coding gene bone gamma-carboxyglutamate protein 2
Del(3Bglap2-Bglap)1Vari 3 88377736 to 88384464 6728 cytogenetic marker deletion, Chr3, Bart Williams
Tssr34007 3 88378740 to 88378753 13 - TSS region transcription start site region 34007
Gm6821 3 88381772 to 88382844 1072 + pseudogene predicted gene 6821
Bglap 3 88383501 to 88384464 963 - protein coding gene bone gamma carboxyglutamate protein
Tssr34008 3 88384453 to 88384471 18 - TSS region transcription start site region 34008
Pmf1 3 88394143 to 88410331 16188 - protein coding gene polyamine-modulated factor 1
Tssr34009 3 88395954 to 88395998 44 - TSS region transcription start site region 34009
Cpgi13375 3 88409801 to 88410432 631 CpG island CpG island 13375
Tssr34010 3 88410067 to 88410094 27 - TSS region transcription start site region 34010
Tssr34011 3 88410295 to 88410351 56 - TSS region transcription start site region 34011
Tssr34012 3 88410365 to 88410370 5 - TSS region transcription start site region 34012
Tssr34013 3 88410377 to 88410388 11 - TSS region transcription start site region 34013
Slc25a44 3 88410498 to 88425139 14641 - protein coding gene solute carrier family 25, member 44
Cpgi13376 3 88424752 to 88425243 491 CpG island CpG island 13376
Tssr29948 3 88424794 to 88424800 6 + TSS region transcription start site region 29948
Gm33513 3 88425080 to 88428668 3588 + lncRNA gene predicted gene, 33513
Tssr34014 3 88425094 to 88425139 45 - TSS region transcription start site region 34014
Gm42814 3 88428936 to 88429395 459 + pseudogene predicted gene 42814
Sema4a 3 88435959 to 88461182 25223 - protein coding gene sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A
Cpgi13377 3 88436606 to 88437150 544 CpG island CpG island 13377
Mir7011 3 88440879 to 88440951 72 - miRNA gene microRNA 7011
Tssr34015 3 88440999 to 88441006 7 - TSS region transcription start site region 34015
Tssr29949 3 88441105 to 88441136 31 + TSS region transcription start site region 29949
Tssr29950 3 88446791 to 88446805 14 + TSS region transcription start site region 29950
Tssr34016 3 88447179 to 88447184 5 - TSS region transcription start site region 34016
Tssr34017 3 88452368 to 88452401 33 - TSS region transcription start site region 34017
Tssr34018 3 88453388 to 88453401 13 - TSS region transcription start site region 34018
Tssr34019 3 88453405 to 88453412 7 - TSS region transcription start site region 34019
Tssr34020 3 88453419 to 88453426 7 - TSS region transcription start site region 34020
Tssr34021 3 88453473 to 88453479 6 - TSS region transcription start site region 34021
Tssr34022 3 88454820 to 88454831 11 - TSS region transcription start site region 34022
Tssr34023 3 88454832 to 88454853 21 - TSS region transcription start site region 34023
Tssr932 3 88454878 to 88454887 9 - TSS region transcription start site region 932
Tssr29951 3 88454951 to 88454968 17 + TSS region transcription start site region 29951
Tssr34024 3 88455142 to 88455166 24 - TSS region transcription start site region 34024
Tssr34025 3 88455173 to 88455192 19 - TSS region transcription start site region 34025
Tssr34026 3 88455302 to 88455311 9 - TSS region transcription start site region 34026
Tssr34027 3 88455330 to 88455347 17 - TSS region transcription start site region 34027
Tssr34028 3 88455692 to 88455707 15 - TSS region transcription start site region 34028
Tssr34029 3 88455726 to 88455733 7 - TSS region transcription start site region 34029
Tssr34030 3 88455735 to 88455788 53 - TSS region transcription start site region 34030
Tssr34031 3 88456397 to 88456441 44 - TSS region transcription start site region 34031
Tssr34032 3 88458852 to 88458899 47 - TSS region transcription start site region 34032
Tssr34033 3 88459021 to 88459043 22 - TSS region transcription start site region 34033
Tssr34034 3 88459047 to 88459074 27 - TSS region transcription start site region 34034
Tssr34035 3 88461196 to 88461226 30 - TSS region transcription start site region 34035
Tssr34036 3 88461303 to 88461314 11 - TSS region transcription start site region 34036
Gm40089 3 88462094 to 88466135 4041 - lncRNA gene predicted gene, 40089
Gm5979 3 88474584 to 88475154 570 + pseudogene predicted gene 5979
Lmna 3 88481148 to 88509932 28784 - protein coding gene lamin A
Tssr34037 3 88481907 to 88481915 8 - TSS region transcription start site region 34037
Cpgi13378 3 88482407 to 88482587 180 CpG island CpG island 13378
Tssr29952 3 88483332 to 88483382 50 + TSS region transcription start site region 29952
Cpgi13379 3 88484553 to 88485222 669 CpG island CpG island 13379
Cpgi13380 3 88492973 to 88493225 252 CpG island CpG island 13380
Tssr34038 3 88498561 to 88498646 85 - TSS region transcription start site region 34038
Cpgi13381 3 88502651 to 88503466 815 CpG island CpG island 13381
Tssr933 3 88503029 to 88503039 10 - TSS region transcription start site region 933
Tssr34039 3 88503061 to 88503067 6 - TSS region transcription start site region 34039
Tssr34040 3 88503187 to 88503323 136 - TSS region transcription start site region 34040
Tssr34041 3 88503331 to 88503350 19 - TSS region transcription start site region 34041
Tssr34042 3 88503598 to 88503614 16 - TSS region transcription start site region 34042
Tssr34043 3 88509943 to 88509992 49 - TSS region transcription start site region 34043
Cpgi13382 3 88509990 to 88510271 281 CpG island CpG island 13382
Tssr34044 3 88511110 to 88511123 13 - TSS region transcription start site region 34044
Tssr34045 3 88512604 to 88512620 16 - TSS region transcription start site region 34045
Tssr29953 3 88514044 to 88514067 23 + TSS region transcription start site region 29953
Gm37584 3 88526066 to 88527355 1289 - lincRNA gene predicted gene, 37584
Gm38618 3 88529266 to 88531792 2526 - lncRNA gene predicted gene, 38618
Cpgi13383 3 88531248 to 88533374 2126 CpG island CpG island 13383
Tssr34046 3 88531381 to 88531393 12 - TSS region transcription start site region 34046
Tssr29954 3 88531494 to 88531527 33 + TSS region transcription start site region 29954
Tssr29955 3 88531529 to 88531545 16 + TSS region transcription start site region 29955
Tssr29956 3 88531904 to 88531995 91 + TSS region transcription start site region 29956
Tssr29957 3 88532314 to 88532396 82 + TSS region transcription start site region 29957
Mex3a 3 88532395 to 88541394 8999 + protein coding gene mex3 RNA binding family member A
Tssr29958 3 88532712 to 88532765 53 + TSS region transcription start site region 29958
Cpgi13384 3 88536119 to 88537115 996 CpG island CpG island 13384
Mir1905 3 88536301 to 88536382 81 - miRNA gene microRNA 1905
Tssr29959 3 88537330 to 88537338 8 + TSS region transcription start site region 29959
Tssr29960 3 88537364 to 88537377 13 + TSS region transcription start site region 29960
Rab25 3 88542029 to 88548279 6250 - protein coding gene RAB25, member RAS oncogene family
Tssr34047 3 88548264 to 88548311 47 - TSS region transcription start site region 34047
Lamtor2 3 88549819 to 88552927 3108 - protein coding gene late endosomal/lysosomal adaptor, MAPK and MTOR activator 2
Cpgi13385 3 88552389 to 88554422 2033 CpG island CpG island 13385
Tssr34048 3 88552843 to 88552855 12 - TSS region transcription start site region 34048
Tssr34049 3 88552861 to 88552958 97 - TSS region transcription start site region 34049
Tssr934 3 88553707 to 88553736 29 + TSS region transcription start site region 934
Tssr29961 3 88553754 to 88553806 52 + TSS region transcription start site region 29961
Ubqln4 3 88553758 to 88569725 15967 + protein coding gene ubiquilin 4
Tssr34050 3 88554445 to 88554460 15 - TSS region transcription start site region 34050
Tssr29962 3 88563184 to 88563221 37 + TSS region transcription start site region 29962
Tssr935 3 88563763 to 88563801 38 + TSS region transcription start site region 935
Tssr29963 3 88564447 to 88564459 12 + TSS region transcription start site region 29963
Tssr29964 3 88568238 to 88568265 27 + TSS region transcription start site region 29964
Tssr34051 3 88570464 to 88570481 17 - TSS region transcription start site region 34051
Tssr34052 3 88570483 to 88570495 12 - TSS region transcription start site region 34052
Tssr34053 3 88570527 to 88570532 5 - TSS region transcription start site region 34053
Tssr29965 3 88570598 to 88570637 39 + TSS region transcription start site region 29965
Tssr34054 3 88571856 to 88571863 7 - TSS region transcription start site region 34054
Tssr34055 3 88571888 to 88571899 11 - TSS region transcription start site region 34055
Tssr29966 3 88573247 to 88573253 6 + TSS region transcription start site region 29966