Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:88053891-88223904

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73 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gpatch4 3 88043108 to 88055993 12885 + protein coding gene G patch domain containing 4
Tssr29892 3 88055123 to 88055134 11 + TSS region transcription start site region 29892
Tssr29893 3 88055484 to 88055492 8 + TSS region transcription start site region 29893
Naxe 3 88056520 to 88058495 1975 - protein coding gene NAD(P)HX epimerase
Cpgi13358 3 88057864 to 88058736 872 CpG island CpG island 13358
Tssr33979 3 88058232 to 88058245 13 - TSS region transcription start site region 33979
Tssr33980 3 88058446 to 88058535 89 - TSS region transcription start site region 33980
Ttc24 3 88069410 to 88078304 8894 - protein coding gene tetratricopeptide repeat domain 24
Tssr33981 3 88072039 to 88072042 3 - TSS region transcription start site region 33981
Tssr33982 3 88072046 to 88072068 22 - TSS region transcription start site region 33982
Tssr33983 3 88078295 to 88078328 33 - TSS region transcription start site region 33983
Cpgi13359 3 88081873 to 88082393 520 CpG island CpG island 13359
Tssr29894 3 88081997 to 88082051 54 + TSS region transcription start site region 29894
Iqgap3 3 88082051 to 88121048 38997 + protein coding gene IQ motif containing GTPase activating protein 3
D3Mit210 3 88089061 to 88089168 107 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 210
Gm40087 3 88133515 to 88138419 4904 + lncRNA gene predicted gene, 40087
Tssr29895 3 88138789 to 88138805 16 + TSS region transcription start site region 29895
Cpgi13360 3 88138870 to 88139433 563 CpG island CpG island 13360
Tssr29896 3 88138891 to 88138904 13 + TSS region transcription start site region 29896
Tssr33984 3 88139433 to 88139467 34 - TSS region transcription start site region 33984
Tssr33985 3 88139929 to 88139945 16 - TSS region transcription start site region 33985
Tssr29897 3 88140837 to 88140855 18 + TSS region transcription start site region 29897
Tssr29898 3 88141160 to 88141164 4 + TSS region transcription start site region 29898
Tssr33986 3 88141626 to 88141639 13 - TSS region transcription start site region 33986
Tssr29899 3 88141767 to 88141771 4 + TSS region transcription start site region 29899
Cpgi13361 3 88141879 to 88143560 1681 CpG island CpG island 13361
Tssr29900 3 88141973 to 88142024 51 + TSS region transcription start site region 29900
Tssr33987 3 88142174 to 88142194 20 - TSS region transcription start site region 33987
Tssr29901 3 88142328 to 88142483 155 + TSS region transcription start site region 29901
Mef2d 3 88142372 to 88172086 29714 + protein coding gene myocyte enhancer factor 2D
Tssr29902 3 88142536 to 88142545 9 + TSS region transcription start site region 29902
Tssr29903 3 88142547 to 88142585 38 + TSS region transcription start site region 29903
Tssr29904 3 88142702 to 88142745 43 + TSS region transcription start site region 29904
Tssr29905 3 88142802 to 88142822 20 + TSS region transcription start site region 29905
Tssr33988 3 88143209 to 88143229 20 - TSS region transcription start site region 33988
Tssr29906 3 88143349 to 88143448 99 + TSS region transcription start site region 29906
Tssr33989 3 88143620 to 88143631 11 - TSS region transcription start site region 33989
Tssr29907 3 88144332 to 88144340 8 + TSS region transcription start site region 29907
Tssr29908 3 88145582 to 88145600 18 + TSS region transcription start site region 29908
Tssr29909 3 88158079 to 88158094 15 + TSS region transcription start site region 29909
Tssr29910 3 88159724 to 88159731 7 + TSS region transcription start site region 29910
Tssr33990 3 88161304 to 88161324 20 - TSS region transcription start site region 33990
Tssr29911 3 88163043 to 88163053 10 + TSS region transcription start site region 29911
Tssr29912 3 88167572 to 88167588 16 + TSS region transcription start site region 29912
Tssr29913 3 88167594 to 88167654 60 + TSS region transcription start site region 29913
Tssr29914 3 88170324 to 88170336 12 + TSS region transcription start site region 29914
1700113A16Rik 3 88171560 to 88177785 6225 - antisense lncRNA gene RIKEN cDNA 1700113A16 gene
Cpgi13362 3 88177544 to 88178371 827 CpG island CpG island 13362
Tssr33991 3 88177671 to 88177783 112 - TSS region transcription start site region 33991
D3Mit74 3 88187246 to 88187394 148 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 74
AI849053 3 88199102 to 88204595 5493 - lincRNA gene expressed sequence AI849053
Tssr29915 3 88200255 to 88200269 14 + TSS region transcription start site region 29915
Tssr29916 3 88200270 to 88200279 9 + TSS region transcription start site region 29916
Tssr29917 3 88200285 to 88200318 33 + TSS region transcription start site region 29917
Cpgi13363 3 88200298 to 88201591 1293 CpG island CpG island 13363
Tssr29918 3 88200323 to 88200348 25 + TSS region transcription start site region 29918
Tssr29919 3 88200607 to 88200629 22 + TSS region transcription start site region 29919
AW047730 3 88200623 to 88203481 2858 + unclassified non-coding RNA gene expressed sequence AW047730
Tssr29920 3 88206525 to 88206537 12 + TSS region transcription start site region 29920
Tssr29921 3 88206786 to 88206824 38 + TSS region transcription start site region 29921
Gm3764 3 88206813 to 88229959 23146 + lincRNA gene predicted gene 3764
Tssr29922 3 88207100 to 88207135 35 + TSS region transcription start site region 29922
Cpgi13364 3 88207218 to 88207584 366 CpG island CpG island 13364
Tssr29923 3 88207255 to 88207305 50 + TSS region transcription start site region 29923
Tssr29924 3 88207308 to 88207328 20 + TSS region transcription start site region 29924
Tssr29925 3 88212739 to 88212771 32 + TSS region transcription start site region 29925
Cpgi13365 3 88214387 to 88216175 1788 CpG island CpG island 13365
Tssr29926 3 88214474 to 88214491 17 + TSS region transcription start site region 29926
Mir3093 3 88215171 to 88215257 86 + miRNA gene microRNA 3093
Gm25641 3 88215589 to 88215696 107 - miRNA gene predicted gene, 25641
Mir9-1 3 88215598 to 88215686 88 + miRNA gene microRNA 9-1
Tssr29927 3 88215672 to 88215680 8 + TSS region transcription start site region 29927
Tssr29928 3 88218241 to 88218246 5 + TSS region transcription start site region 29928