Gene symbol | Chromo- some |
Coordinates (bp, mm10) | Size (bp) | Strand | Feature Type | Gene name |
---|---|---|---|---|---|---|
Cia5a | 3 | 1969640 | QTL | collagen induced arthritis QTL 5a | ||
Bcan | 3 | 12699 | - | protein coding gene | brevican | |
Cpgi13353 | 3 | 1191 | CpG island | CpG island 13353 | ||
Cpgi13354 | 3 | 1717 | CpG island | CpG island 13354 | ||
Tssr33966 | 3 | 32 | - | TSS region | transcription start site region 33966 | |
Tssr33967 | 3 | 5 | - | TSS region | transcription start site region 33967 | |
Tssr33968 | 3 | 26 | - | TSS region | transcription start site region 33968 | |
Tssr33969 | 3 | 7 | - | TSS region | transcription start site region 33969 | |
Tssr33970 | 3 | 9 | - | TSS region | transcription start site region 33970 | |
Tssr33971 | 3 | 25 | - | TSS region | transcription start site region 33971 | |
Tssr33972 | 3 | 17 | - | TSS region | transcription start site region 33972 | |
Tssr33973 | 3 | 23 | - | TSS region | transcription start site region 33973 | |
Tssr33974 | 3 | 11 | - | TSS region | transcription start site region 33974 | |
Tssr33975 | 3 | 28 | - | TSS region | transcription start site region 33975 | |
Cpgi13355 | 3 | 166 | CpG island | CpG island 13355 | ||
Hapln2 | 3 | 5833 | - | protein coding gene | hyaluronan and proteoglycan link protein 2 | |
Cpgi13356 | 3 | 1714 | CpG island | CpG island 13356 | ||
Tssr33976 | 3 | 12 | - | TSS region | transcription start site region 33976 | |
Tssr33977 | 3 | 11 | - | TSS region | transcription start site region 33977 | |
Tssr33978 | 3 | 35 | - | TSS region | transcription start site region 33978 | |
Tssr29887 | 3 | 11 | + | TSS region | transcription start site region 29887 | |
Tssr29888 | 3 | 11 | + | TSS region | transcription start site region 29888 | |
Tssr29889 | 3 | 13 | + | TSS region | transcription start site region 29889 | |
Gm19439 | 3 | 2272 | + | lncRNA gene | predicted gene, 19439 | |
Cpgi13357 | 3 | 459 | CpG island | CpG island 13357 | ||
Tssr29890 | 3 | 30 | + | TSS region | transcription start site region 29890 | |
Gpatch4 | 3 | 12885 | + | protein coding gene | G patch domain containing 4 | |
Tssr29891 | 3 | 19 | + | TSS region | transcription start site region 29891 | |
Tssr29892 | 3 | 11 | + | TSS region | transcription start site region 29892 | |
Tssr29893 | 3 | 8 | + | TSS region | transcription start site region 29893 | |
Naxe | 3 | 1975 | - | protein coding gene | NAD(P)HX epimerase | |
Cpgi13358 | 3 | 872 | CpG island | CpG island 13358 | ||
Tssr33979 | 3 | 13 | - | TSS region | transcription start site region 33979 | |
Tssr33980 | 3 | 89 | - | TSS region | transcription start site region 33980 | |
Ttc24 | 3 | 8894 | - | protein coding gene | tetratricopeptide repeat domain 24 | |
Tssr33981 | 3 | 3 | - | TSS region | transcription start site region 33981 | |
Tssr33982 | 3 | 22 | - | TSS region | transcription start site region 33982 | |
Tssr33983 | 3 | 33 | - | TSS region | transcription start site region 33983 | |
Cpgi13359 | 3 | 520 | CpG island | CpG island 13359 | ||
Tssr29894 | 3 | 54 | + | TSS region | transcription start site region 29894 | |
Iqgap3 | 3 | 38997 | + | protein coding gene | IQ motif containing GTPase activating protein 3 | |
D3Mit210 | 3 | 107 | DNA segment | DNA segment, Chr 3, Massachusetts Institute of Technology 210 | ||
Gm40087 | 3 | 4904 | + | lncRNA gene | predicted gene, 40087 | |
Tssr29895 | 3 | 16 | + | TSS region | transcription start site region 29895 | |
Cpgi13360 | 3 | 563 | CpG island | CpG island 13360 | ||
Tssr29896 | 3 | 13 | + | TSS region | transcription start site region 29896 | |
Tssr33984 | 3 | 34 | - | TSS region | transcription start site region 33984 | |
Tssr33985 | 3 | 16 | - | TSS region | transcription start site region 33985 | |
Tssr29897 | 3 | 18 | + | TSS region | transcription start site region 29897 | |
Tssr29898 | 3 | 4 | + | TSS region | transcription start site region 29898 | |
Tssr33986 | 3 | 13 | - | TSS region | transcription start site region 33986 | |
Tssr29899 | 3 | 4 | + | TSS region | transcription start site region 29899 | |
Cpgi13361 | 3 | 1681 | CpG island | CpG island 13361 | ||
Tssr29900 | 3 | 51 | + | TSS region | transcription start site region 29900 | |
Tssr33987 | 3 | 20 | - | TSS region | transcription start site region 33987 | |
Tssr29901 | 3 | 155 | + | TSS region | transcription start site region 29901 | |
Mef2d | 3 | 29714 | + | protein coding gene | myocyte enhancer factor 2D | |
Tssr29902 | 3 | 9 | + | TSS region | transcription start site region 29902 | |
Tssr29903 | 3 | 38 | + | TSS region | transcription start site region 29903 | |
Tssr29904 | 3 | 43 | + | TSS region | transcription start site region 29904 | |
Tssr29905 | 3 | 20 | + | TSS region | transcription start site region 29905 | |
Tssr33988 | 3 | 20 | - | TSS region | transcription start site region 33988 | |
Tssr29906 | 3 | 99 | + | TSS region | transcription start site region 29906 | |
Tssr33989 | 3 | 11 | - | TSS region | transcription start site region 33989 | |
Tssr29907 | 3 | 8 | + | TSS region | transcription start site region 29907 | |
Tssr29908 | 3 | 18 | + | TSS region | transcription start site region 29908 | |
Tssr29909 | 3 | 15 | + | TSS region | transcription start site region 29909 | |
Tssr29910 | 3 | 7 | + | TSS region | transcription start site region 29910 | |
Tssr33990 | 3 | 20 | - | TSS region | transcription start site region 33990 | |
Tssr29911 | 3 | 10 | + | TSS region | transcription start site region 29911 | |
Tssr29912 | 3 | 16 | + | TSS region | transcription start site region 29912 | |
Tssr29913 | 3 | 60 | + | TSS region | transcription start site region 29913 | |
Tssr29914 | 3 | 12 | + | TSS region | transcription start site region 29914 | |
1700113A16Rik | 3 | 6225 | - | antisense lncRNA gene | RIKEN cDNA 1700113A16 gene | |
Cpgi13362 | 3 | 827 | CpG island | CpG island 13362 | ||
Tssr33991 | 3 | 112 | - | TSS region | transcription start site region 33991 | |
D3Mit74 | 3 | 148 | DNA segment | DNA segment, Chr 3, Massachusetts Institute of Technology 74 | ||
AI849053 | 3 | 5493 | - | lincRNA gene | expressed sequence AI849053 | |
Tssr29915 | 3 | 14 | + | TSS region | transcription start site region 29915 | |
Tssr29916 | 3 | 9 | + | TSS region | transcription start site region 29916 | |
Tssr29917 | 3 | 33 | + | TSS region | transcription start site region 29917 | |
Cpgi13363 | 3 | 1293 | CpG island | CpG island 13363 | ||
Tssr29918 | 3 | 25 | + | TSS region | transcription start site region 29918 | |
Tssr29919 | 3 | 22 | + | TSS region | transcription start site region 29919 | |
AW047730 | 3 | 2858 | + | unclassified non-coding RNA gene | expressed sequence AW047730 | |
Tssr29920 | 3 | 12 | + | TSS region | transcription start site region 29920 | |
Tssr29921 | 3 | 38 | + | TSS region | transcription start site region 29921 | |
Gm3764 | 3 | 23146 | + | lincRNA gene | predicted gene 3764 | |
Tssr29922 | 3 | 35 | + | TSS region | transcription start site region 29922 | |
Cpgi13364 | 3 | 366 | CpG island | CpG island 13364 | ||
Tssr29923 | 3 | 50 | + | TSS region | transcription start site region 29923 | |
Tssr29924 | 3 | 20 | + | TSS region | transcription start site region 29924 | |
Tssr29925 | 3 | 32 | + | TSS region | transcription start site region 29925 | |
Cpgi13365 | 3 | 1788 | CpG island | CpG island 13365 | ||
Tssr29926 | 3 | 17 | + | TSS region | transcription start site region 29926 | |
Mir3093 | 3 | 86 | + | miRNA gene | microRNA 3093 | |
Gm25641 | 3 | 107 | - | miRNA gene | predicted gene, 25641 | |
Mir9-1 | 3 | 88 | + | miRNA gene | microRNA 9-1 | |
Tssr29927 | 3 | 8 | + | TSS region | transcription start site region 29927 | |
Tssr29928 | 3 | 5 | + | TSS region | transcription start site region 29928 | |
4931402H11Rik | 3 | 4925 | unclassified non-coding RNA gene | RIKEN cDNA 4931402H11 gene | ||
Tssr29929 | 3 | 4 | + | TSS region | transcription start site region 29929 | |
Tssr29930 | 3 | 11 | + | TSS region | transcription start site region 29930 | |
Cpgi13366 | 3 | 1140 | CpG island | CpG island 13366 | ||
Rhbg | 3 | 11835 | - | protein coding gene | Rhesus blood group-associated B glycoprotein | |
Gm38392 | 3 | 43830 | - | protein coding gene | predicted gene, 38392 | |
Cpgi13367 | 3 | 211 | CpG island | CpG island 13367 | ||
Cpgi13368 | 3 | 576 | CpG island | CpG island 13368 | ||
Tssr33992 | 3 | 14 | - | TSS region | transcription start site region 33992 | |
Tssr33993 | 3 | 16 | - | TSS region | transcription start site region 33993 | |
Tssr33994 | 3 | 20 | - | TSS region | transcription start site region 33994 | |
Tssr29931 | 3 | 18 | + | TSS region | transcription start site region 29931 | |
Tssr29932 | 3 | 11 | + | TSS region | transcription start site region 29932 | |
Tssr33995 | 3 | 16 | - | TSS region | transcription start site region 33995 | |
Tssr931 | 3 | 7 | + | TSS region | transcription start site region 931 | |
Tsacc | 3 | 14242 | - | protein coding gene | TSSK6 activating co-chaperone | |
Gm37116 | 3 | 146 | - | pseudogene | predicted gene, 37116 | |
Tssr33996 | 3 | 12 | - | TSS region | transcription start site region 33996 | |
Cpgi13369 | 3 | 1238 | CpG island | CpG island 13369 | ||
Tssr33997 | 3 | 20 | - | TSS region | transcription start site region 33997 | |
Tssr29933 | 3 | 29 | + | TSS region | transcription start site region 29933 | |
Tssr33998 | 3 | 59 | - | TSS region | transcription start site region 33998 | |
Tssr33999 | 3 | 14 | - | TSS region | transcription start site region 33999 | |
Tssr34000 | 3 | 9 | - | TSS region | transcription start site region 34000 | |
Tssr29934 | 3 | 11 | + | TSS region | transcription start site region 29934 | |
Tssr29935 | 3 | 29 | + | TSS region | transcription start site region 29935 | |
Cct3 | 3 | 24631 | + | protein coding gene | chaperonin containing Tcp1, subunit 3 (gamma) | |
Tssr29936 | 3 | 46 | + | TSS region | transcription start site region 29936 | |
Tssr29937 | 3 | 22 | + | TSS region | transcription start site region 29937 | |
Glmp | 3 | 3608 | + | protein coding gene | glycosylated lysosomal membrane protein | |
Tssr29938 | 3 | 45 | + | TSS region | transcription start site region 29938 | |
Tssr29939 | 3 | 2 | + | TSS region | transcription start site region 29939 | |
Tssr29940 | 3 | 18 | + | TSS region | transcription start site region 29940 | |
Tssr29941 | 3 | 31 | + | TSS region | transcription start site region 29941 | |
Tmem79 | 3 | 5780 | - | protein coding gene | transmembrane protein 79 | |
Cpgi13370 | 3 | 905 | CpG island | CpG island 13370 | ||
Tssr34001 | 3 | 38 | - | TSS region | transcription start site region 34001 | |
Tssr34002 | 3 | 13 | - | TSS region | transcription start site region 34002 | |
BC038331 | 3 | 1439 | unclassified gene | cDNA sequence BC038331 | ||
D3Mit175 | 3 | 134 | DNA segment | DNA segment, Chr 3, Massachusetts Institute of Technology 175 | ||
Cpgi13371 | 3 | 1049 | CpG island | CpG island 13371 | ||
Tssr34003 | 3 | 33 | - | TSS region | transcription start site region 34003 | |
Tssr29942 | 3 | 48 | + | TSS region | transcription start site region 29942 | |
Smg5 | 3 | 26077 | + | protein coding gene | Smg-5 homolog, nonsense mediated mRNA decay factor (C. elegans) | |
Tssr34004 | 3 | 28 | - | TSS region | transcription start site region 34004 | |
Tssr29943 | 3 | 10 | + | TSS region | transcription start site region 29943 | |
Tssr29944 | 3 | 4 | + | TSS region | transcription start site region 29944 | |
Tssr29945 | 3 | 15 | + | TSS region | transcription start site region 29945 | |
Cpgi13372 | 3 | 180 | CpG island | CpG island 13372 | ||
Tssr29946 | 3 | 13 | + | TSS region | transcription start site region 29946 | |
Cpgi13373 | 3 | 241 | CpG island | CpG island 13373 | ||
Tssr29947 | 3 | 58 | + | TSS region | transcription start site region 29947 | |
Paqr6 | 3 | 3957 | + | protein coding gene | progestin and adipoQ receptor family member VI | |
Cpgi13374 | 3 | 665 | CpG island | CpG island 13374 | ||
Bglap3 | 3 | 4125 | - | protein coding gene | bone gamma-carboxyglutamate protein 3 | |
Tssr34005 | 3 | 5 | - | TSS region | transcription start site region 34005 | |
Tssr34006 | 3 | 5 | - | TSS region | transcription start site region 34006 | |
Gm21956 | 3 | 1052 | + | pseudogene | predicted gene, 21956 | |
Bglap2 | 3 | 963 | - | protein coding gene | bone gamma-carboxyglutamate protein 2 | |
Del(3Bglap2-Bglap)1Vari | 3 | 6728 | cytogenetic marker | deletion, Chr3, Bart Williams | ||
Tssr34007 | 3 | 13 | - | TSS region | transcription start site region 34007 | |
Gm6821 | 3 | 1072 | + | pseudogene | predicted gene 6821 | |
Bglap | 3 | 963 | - | protein coding gene | bone gamma carboxyglutamate protein | |
Tssr34008 | 3 | 18 | - | TSS region | transcription start site region 34008 | |
Pmf1 | 3 | 16188 | - | protein coding gene | polyamine-modulated factor 1 | |
Tssr34009 | 3 | 44 | - | TSS region | transcription start site region 34009 | |
Cpgi13375 | 3 | 631 | CpG island | CpG island 13375 | ||
Tssr34010 | 3 | 27 | - | TSS region | transcription start site region 34010 | |
Tssr34011 | 3 | 56 | - | TSS region | transcription start site region 34011 | |
Tssr34012 | 3 | 5 | - | TSS region | transcription start site region 34012 | |
Tssr34013 | 3 | 11 | - | TSS region | transcription start site region 34013 | |
Slc25a44 | 3 | 14641 | - | protein coding gene | solute carrier family 25, member 44 | |
Cpgi13376 | 3 | 491 | CpG island | CpG island 13376 | ||
Tssr29948 | 3 | 6 | + | TSS region | transcription start site region 29948 | |
Gm33513 | 3 | 3588 | + | lncRNA gene | predicted gene, 33513 | |
Tssr34014 | 3 | 45 | - | TSS region | transcription start site region 34014 | |
Gm42814 | 3 | 459 | + | pseudogene | predicted gene 42814 | |
Sema4a | 3 | 25223 | - | protein coding gene | sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A | |
Cpgi13377 | 3 | 544 | CpG island | CpG island 13377 | ||
Mir7011 | 3 | 72 | - | miRNA gene | microRNA 7011 | |
Tssr34015 | 3 | 7 | - | TSS region | transcription start site region 34015 | |
Tssr29949 | 3 | 31 | + | TSS region | transcription start site region 29949 | |
Tssr29950 | 3 | 14 | + | TSS region | transcription start site region 29950 | |
Tssr34016 | 3 | 5 | - | TSS region | transcription start site region 34016 | |
Tssr34017 | 3 | 33 | - | TSS region | transcription start site region 34017 | |
Tssr34018 | 3 | 13 | - | TSS region | transcription start site region 34018 | |
Tssr34019 | 3 | 7 | - | TSS region | transcription start site region 34019 | |
Tssr34020 | 3 | 7 | - | TSS region | transcription start site region 34020 | |
Tssr34021 | 3 | 6 | - | TSS region | transcription start site region 34021 | |
Tssr34022 | 3 | 11 | - | TSS region | transcription start site region 34022 | |
Tssr34023 | 3 | 21 | - | TSS region | transcription start site region 34023 | |
Tssr932 | 3 | 9 | - | TSS region | transcription start site region 932 | |
Tssr29951 | 3 | 17 | + | TSS region | transcription start site region 29951 | |
Tssr34024 | 3 | 24 | - | TSS region | transcription start site region 34024 | |
Tssr34025 | 3 | 19 | - | TSS region | transcription start site region 34025 | |
Tssr34026 | 3 | 9 | - | TSS region | transcription start site region 34026 | |
Tssr34027 | 3 | 17 | - | TSS region | transcription start site region 34027 | |
Tssr34028 | 3 | 15 | - | TSS region | transcription start site region 34028 | |
Tssr34029 | 3 | 7 | - | TSS region | transcription start site region 34029 | |
Tssr34030 | 3 | 53 | - | TSS region | transcription start site region 34030 |