Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:87990484-88120492

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42 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Bcan 3 87987531 to 88000230 12699 - protein coding gene brevican
Tssr33965 3 87996355 to 87996368 13 - TSS region transcription start site region 33965
Cpgi13353 3 87996504 to 87997695 1191 CpG island CpG island 13353
Cpgi13354 3 87999157 to 88000874 1717 CpG island CpG island 13354
Tssr33966 3 88000148 to 88000180 32 - TSS region transcription start site region 33966
Tssr33967 3 88000188 to 88000193 5 - TSS region transcription start site region 33967
Tssr33968 3 88000197 to 88000223 26 - TSS region transcription start site region 33968
Tssr33969 3 88000233 to 88000240 7 - TSS region transcription start site region 33969
Tssr33970 3 88000350 to 88000359 9 - TSS region transcription start site region 33970
Tssr33971 3 88000364 to 88000389 25 - TSS region transcription start site region 33971
Tssr33972 3 88000403 to 88000420 17 - TSS region transcription start site region 33972
Tssr33973 3 88000843 to 88000866 23 - TSS region transcription start site region 33973
Tssr33974 3 88000894 to 88000905 11 - TSS region transcription start site region 33974
Tssr33975 3 88001015 to 88001043 28 - TSS region transcription start site region 33975
Cpgi13355 3 88002541 to 88002707 166 CpG island CpG island 13355
Hapln2 3 88021750 to 88027583 5833 - protein coding gene hyaluronan and proteoglycan link protein 2
Cpgi13356 3 88022384 to 88024098 1714 CpG island CpG island 13356
Tssr33976 3 88027228 to 88027240 12 - TSS region transcription start site region 33976
Tssr33977 3 88027451 to 88027462 11 - TSS region transcription start site region 33977
Tssr33978 3 88027465 to 88027500 35 - TSS region transcription start site region 33978
Tssr29887 3 88030839 to 88030850 11 + TSS region transcription start site region 29887
Tssr29888 3 88030852 to 88030863 11 + TSS region transcription start site region 29888
Tssr29889 3 88030872 to 88030885 13 + TSS region transcription start site region 29889
Gm19439 3 88030878 to 88033150 2272 + lncRNA gene predicted gene, 19439
Cpgi13357 3 88043089 to 88043548 459 CpG island CpG island 13357
Tssr29890 3 88043098 to 88043128 30 + TSS region transcription start site region 29890
Gpatch4 3 88043108 to 88055993 12885 + protein coding gene G patch domain containing 4
Tssr29891 3 88043131 to 88043150 19 + TSS region transcription start site region 29891
Tssr29892 3 88055123 to 88055134 11 + TSS region transcription start site region 29892
Tssr29893 3 88055484 to 88055492 8 + TSS region transcription start site region 29893
Naxe 3 88056520 to 88058495 1975 - protein coding gene NAD(P)HX epimerase
Cpgi13358 3 88057864 to 88058736 872 CpG island CpG island 13358
Tssr33979 3 88058232 to 88058245 13 - TSS region transcription start site region 33979
Tssr33980 3 88058446 to 88058535 89 - TSS region transcription start site region 33980
Ttc24 3 88069410 to 88078304 8894 - protein coding gene tetratricopeptide repeat domain 24
Tssr33981 3 88072039 to 88072042 3 - TSS region transcription start site region 33981
Tssr33982 3 88072046 to 88072068 22 - TSS region transcription start site region 33982
Tssr33983 3 88078295 to 88078328 33 - TSS region transcription start site region 33983
Cpgi13359 3 88081873 to 88082393 520 CpG island CpG island 13359
Tssr29894 3 88081997 to 88082051 54 + TSS region transcription start site region 29894
Iqgap3 3 88082051 to 88121048 38997 + protein coding gene IQ motif containing GTPase activating protein 3
D3Mit210 3 88089061 to 88089168 107 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 210