Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:87915947-88035962

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66 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Hdgf 3 87906321 to 87916132 9811 + protein coding gene heparin binding growth factor
Cpgi13346 3 87919355 to 87919857 502 CpG island CpG island 13346
Tssr29862 3 87919490 to 87919497 7 + TSS region transcription start site region 29862
Mrpl24 3 87919506 to 87923672 4166 + protein coding gene mitochondrial ribosomal protein L24
Tssr29863 3 87919515 to 87919526 11 + TSS region transcription start site region 29863
Tssr29864 3 87919528 to 87919558 30 + TSS region transcription start site region 29864
Tssr29865 3 87919567 to 87919576 9 + TSS region transcription start site region 29865
Tssr29866 3 87919660 to 87919677 17 + TSS region transcription start site region 29866
Tssr29867 3 87919693 to 87919713 20 + TSS region transcription start site region 29867
Tssr29868 3 87921895 to 87921921 26 + TSS region transcription start site region 29868
Rrnad1 3 87922601 to 87930582 7981 - protein coding gene ribosomal RNA adenine dimethylase domain containing 1
Cpgi13347 3 87929822 to 87930910 1088 CpG island CpG island 13347
Tssr33964 3 87930121 to 87930182 61 - TSS region transcription start site region 33964
Tssr29869 3 87930204 to 87930234 30 + TSS region transcription start site region 29869
Tssr29870 3 87930256 to 87930350 94 + TSS region transcription start site region 29870
Isg20l2 3 87930314 to 87940686 10372 + protein coding gene interferon stimulated exonuclease gene 20-like 2
Tssr29871 3 87930437 to 87930449 12 + TSS region transcription start site region 29871
Tssr29872 3 87930516 to 87930600 84 + TSS region transcription start site region 29872
Tssr29873 3 87932165 to 87932184 19 + TSS region transcription start site region 29873
Cpgi13348 3 87948330 to 87948742 412 CpG island CpG island 13348
Tssr29874 3 87948687 to 87948704 17 + TSS region transcription start site region 29874
Crabp2 3 87948693 to 87953372 4679 + protein coding gene cellular retinoic acid binding protein II
Tssr29875 3 87952532 to 87952555 23 + TSS region transcription start site region 29875
Tssr29876 3 87953046 to 87953056 10 + TSS region transcription start site region 29876
Tssr29877 3 87953062 to 87953071 9 + TSS region transcription start site region 29877
Tssr29878 3 87953085 to 87953097 12 + TSS region transcription start site region 29878
Gm32518 3 87960084 to 87965726 5642 + lncRNA gene predicted gene, 32518
Cpgi13349 3 87960933 to 87961147 214 CpG island CpG island 13349
Gm3745 3 87968186 to 87968606 420 + pseudogene predicted gene 3745
Cpgi13350 3 87970793 to 87972323 1530 CpG island CpG island 13350
Tssr29879 3 87971071 to 87971089 18 + TSS region transcription start site region 29879
Nes 3 87971093 to 87980451 9358 + protein coding gene nestin
Tssr930 3 87971145 to 87971150 5 + TSS region transcription start site region 930
Tssr29880 3 87971154 to 87971165 11 + TSS region transcription start site region 29880
Tssr29881 3 87975767 to 87975796 29 + TSS region transcription start site region 29881
Tssr29882 3 87975947 to 87975962 15 + TSS region transcription start site region 29882
Tssr29883 3 87976023 to 87976045 22 + TSS region transcription start site region 29883
Tssr29884 3 87976108 to 87976119 11 + TSS region transcription start site region 29884
Tssr29885 3 87976220 to 87976246 26 + TSS region transcription start site region 29885
Tssr29886 3 87977209 to 87977213 4 + TSS region transcription start site region 29886
Cpgi13351 3 87986920 to 87987193 273 CpG island CpG island 13351
Bcan 3 87987531 to 88000230 12699 - protein coding gene brevican
Cpgi13352 3 87987925 to 87988487 562 CpG island CpG island 13352
Tssr33965 3 87996355 to 87996368 13 - TSS region transcription start site region 33965
Cpgi13353 3 87996504 to 87997695 1191 CpG island CpG island 13353
Cpgi13354 3 87999157 to 88000874 1717 CpG island CpG island 13354
Tssr33966 3 88000148 to 88000180 32 - TSS region transcription start site region 33966
Tssr33967 3 88000188 to 88000193 5 - TSS region transcription start site region 33967
Tssr33968 3 88000197 to 88000223 26 - TSS region transcription start site region 33968
Tssr33969 3 88000233 to 88000240 7 - TSS region transcription start site region 33969
Tssr33970 3 88000350 to 88000359 9 - TSS region transcription start site region 33970
Tssr33971 3 88000364 to 88000389 25 - TSS region transcription start site region 33971
Tssr33972 3 88000403 to 88000420 17 - TSS region transcription start site region 33972
Tssr33973 3 88000843 to 88000866 23 - TSS region transcription start site region 33973
Tssr33974 3 88000894 to 88000905 11 - TSS region transcription start site region 33974
Tssr33975 3 88001015 to 88001043 28 - TSS region transcription start site region 33975
Cpgi13355 3 88002541 to 88002707 166 CpG island CpG island 13355
Hapln2 3 88021750 to 88027583 5833 - protein coding gene hyaluronan and proteoglycan link protein 2
Cpgi13356 3 88022384 to 88024098 1714 CpG island CpG island 13356
Tssr33976 3 88027228 to 88027240 12 - TSS region transcription start site region 33976
Tssr33977 3 88027451 to 88027462 11 - TSS region transcription start site region 33977
Tssr33978 3 88027465 to 88027500 35 - TSS region transcription start site region 33978
Tssr29887 3 88030839 to 88030850 11 + TSS region transcription start site region 29887
Tssr29888 3 88030852 to 88030863 11 + TSS region transcription start site region 29888
Tssr29889 3 88030872 to 88030885 13 + TSS region transcription start site region 29889
Gm19439 3 88030878 to 88033150 2272 + lncRNA gene predicted gene, 19439