Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:87845607-88555629

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334 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr33958 3 87846589 to 87846601 12 - TSS region transcription start site region 33958
Tssr29833 3 87846725 to 87846772 47 + TSS region transcription start site region 29833
Sh2d2a 3 87846755 to 87855722 8967 + protein coding gene SH2 domain containing 2A
Tssr29834 3 87846778 to 87846788 10 + TSS region transcription start site region 29834
Tssr33959 3 87846787 to 87846801 14 - TSS region transcription start site region 33959
Tssr29835 3 87846840 to 87846854 14 + TSS region transcription start site region 29835
Tssr29836 3 87846881 to 87846893 12 + TSS region transcription start site region 29836
Tssr33960 3 87846884 to 87846905 21 - TSS region transcription start site region 33960
Tssr29837 3 87846988 to 87846999 11 + TSS region transcription start site region 29837
Tssr29838 3 87847004 to 87847067 63 + TSS region transcription start site region 29838
Tssr29839 3 87847136 to 87847147 11 + TSS region transcription start site region 29839
Tssr33961 3 87849105 to 87849126 21 - TSS region transcription start site region 33961
Tssr29840 3 87857971 to 87857978 7 + TSS region transcription start site region 29840
Tssr29841 3 87858003 to 87858014 11 + TSS region transcription start site region 29841
Prcc 3 87858903 to 87885562 26659 - protein coding gene papillary renal cell carcinoma (translocation-associated)
Tssr33962 3 87870113 to 87870140 27 - TSS region transcription start site region 33962
Cpgi13344 3 87884755 to 87885923 1168 CpG island CpG island 13344
Tssr33963 3 87885558 to 87885608 50 - TSS region transcription start site region 33963
Cpgi13345 3 87905911 to 87907541 1630 CpG island CpG island 13345
Tssr927 3 87906070 to 87906091 21 + TSS region transcription start site region 927
Tssr928 3 87906127 to 87906145 18 + TSS region transcription start site region 928
Tssr929 3 87906157 to 87906170 13 + TSS region transcription start site region 929
Tssr29842 3 87906317 to 87906326 9 + TSS region transcription start site region 29842
Hdgf 3 87906321 to 87916132 9811 + protein coding gene heparin binding growth factor
Tssr29843 3 87906333 to 87906356 23 + TSS region transcription start site region 29843
Tssr29844 3 87906362 to 87906414 52 + TSS region transcription start site region 29844
Tssr29845 3 87906530 to 87906607 77 + TSS region transcription start site region 29845
Tssr29846 3 87906608 to 87906637 29 + TSS region transcription start site region 29846
Tssr29847 3 87906842 to 87906856 14 + TSS region transcription start site region 29847
Tssr29848 3 87906891 to 87906909 18 + TSS region transcription start site region 29848
Tssr29849 3 87906913 to 87906933 20 + TSS region transcription start site region 29849
Tssr29850 3 87914918 to 87914945 27 + TSS region transcription start site region 29850
Tssr29851 3 87915056 to 87915080 24 + TSS region transcription start site region 29851
Tssr29852 3 87915081 to 87915095 14 + TSS region transcription start site region 29852
Tssr29853 3 87915161 to 87915183 22 + TSS region transcription start site region 29853
Tssr29854 3 87915276 to 87915327 51 + TSS region transcription start site region 29854
Tssr29855 3 87915484 to 87915512 28 + TSS region transcription start site region 29855
Tssr29856 3 87915537 to 87915548 11 + TSS region transcription start site region 29856
Tssr29857 3 87915560 to 87915572 12 + TSS region transcription start site region 29857
Tssr29858 3 87915578 to 87915603 25 + TSS region transcription start site region 29858
Tssr29859 3 87915612 to 87915635 23 + TSS region transcription start site region 29859
Tssr29860 3 87915750 to 87915783 33 + TSS region transcription start site region 29860
Tssr29861 3 87915789 to 87915805 16 + TSS region transcription start site region 29861
Cpgi13346 3 87919355 to 87919857 502 CpG island CpG island 13346
Tssr29862 3 87919490 to 87919497 7 + TSS region transcription start site region 29862
Mrpl24 3 87919506 to 87923672 4166 + protein coding gene mitochondrial ribosomal protein L24
Tssr29863 3 87919515 to 87919526 11 + TSS region transcription start site region 29863
Tssr29864 3 87919528 to 87919558 30 + TSS region transcription start site region 29864
Tssr29865 3 87919567 to 87919576 9 + TSS region transcription start site region 29865
Tssr29866 3 87919660 to 87919677 17 + TSS region transcription start site region 29866
Tssr29867 3 87919693 to 87919713 20 + TSS region transcription start site region 29867
Tssr29868 3 87921895 to 87921921 26 + TSS region transcription start site region 29868
Rrnad1 3 87922601 to 87930582 7981 - protein coding gene ribosomal RNA adenine dimethylase domain containing 1
Cpgi13347 3 87929822 to 87930910 1088 CpG island CpG island 13347
Tssr33964 3 87930121 to 87930182 61 - TSS region transcription start site region 33964
Tssr29869 3 87930204 to 87930234 30 + TSS region transcription start site region 29869
Tssr29870 3 87930256 to 87930350 94 + TSS region transcription start site region 29870
Isg20l2 3 87930314 to 87940686 10372 + protein coding gene interferon stimulated exonuclease gene 20-like 2
Tssr29871 3 87930437 to 87930449 12 + TSS region transcription start site region 29871
Tssr29872 3 87930516 to 87930600 84 + TSS region transcription start site region 29872
Tssr29873 3 87932165 to 87932184 19 + TSS region transcription start site region 29873
Cpgi13348 3 87948330 to 87948742 412 CpG island CpG island 13348
Tssr29874 3 87948687 to 87948704 17 + TSS region transcription start site region 29874
Crabp2 3 87948693 to 87953372 4679 + protein coding gene cellular retinoic acid binding protein II
Tssr29875 3 87952532 to 87952555 23 + TSS region transcription start site region 29875
Tssr29876 3 87953046 to 87953056 10 + TSS region transcription start site region 29876
Tssr29877 3 87953062 to 87953071 9 + TSS region transcription start site region 29877
Tssr29878 3 87953085 to 87953097 12 + TSS region transcription start site region 29878
Gm32518 3 87960084 to 87965726 5642 + lncRNA gene predicted gene, 32518
Cpgi13349 3 87960933 to 87961147 214 CpG island CpG island 13349
Gm3745 3 87968186 to 87968606 420 + pseudogene predicted gene 3745
Cpgi13350 3 87970793 to 87972323 1530 CpG island CpG island 13350
Tssr29879 3 87971071 to 87971089 18 + TSS region transcription start site region 29879
Nes 3 87971093 to 87980451 9358 + protein coding gene nestin
Tssr930 3 87971145 to 87971150 5 + TSS region transcription start site region 930
Tssr29880 3 87971154 to 87971165 11 + TSS region transcription start site region 29880
Tssr29881 3 87975767 to 87975796 29 + TSS region transcription start site region 29881
Tssr29882 3 87975947 to 87975962 15 + TSS region transcription start site region 29882
Tssr29883 3 87976023 to 87976045 22 + TSS region transcription start site region 29883
Tssr29884 3 87976108 to 87976119 11 + TSS region transcription start site region 29884
Tssr29885 3 87976220 to 87976246 26 + TSS region transcription start site region 29885
Tssr29886 3 87977209 to 87977213 4 + TSS region transcription start site region 29886
Cpgi13351 3 87986920 to 87987193 273 CpG island CpG island 13351
Bcan 3 87987531 to 88000230 12699 - protein coding gene brevican
Cpgi13352 3 87987925 to 87988487 562 CpG island CpG island 13352
Tssr33965 3 87996355 to 87996368 13 - TSS region transcription start site region 33965
Cpgi13353 3 87996504 to 87997695 1191 CpG island CpG island 13353
Cpgi13354 3 87999157 to 88000874 1717 CpG island CpG island 13354
Tssr33966 3 88000148 to 88000180 32 - TSS region transcription start site region 33966
Tssr33967 3 88000188 to 88000193 5 - TSS region transcription start site region 33967
Tssr33968 3 88000197 to 88000223 26 - TSS region transcription start site region 33968
Tssr33969 3 88000233 to 88000240 7 - TSS region transcription start site region 33969
Tssr33970 3 88000350 to 88000359 9 - TSS region transcription start site region 33970
Tssr33971 3 88000364 to 88000389 25 - TSS region transcription start site region 33971
Tssr33972 3 88000403 to 88000420 17 - TSS region transcription start site region 33972
Tssr33973 3 88000843 to 88000866 23 - TSS region transcription start site region 33973
Tssr33974 3 88000894 to 88000905 11 - TSS region transcription start site region 33974
Tssr33975 3 88001015 to 88001043 28 - TSS region transcription start site region 33975
Cpgi13355 3 88002541 to 88002707 166 CpG island CpG island 13355
Hapln2 3 88021750 to 88027583 5833 - protein coding gene hyaluronan and proteoglycan link protein 2
Cpgi13356 3 88022384 to 88024098 1714 CpG island CpG island 13356
Tssr33976 3 88027228 to 88027240 12 - TSS region transcription start site region 33976
Tssr33977 3 88027451 to 88027462 11 - TSS region transcription start site region 33977
Tssr33978 3 88027465 to 88027500 35 - TSS region transcription start site region 33978
Tssr29887 3 88030839 to 88030850 11 + TSS region transcription start site region 29887
Tssr29888 3 88030852 to 88030863 11 + TSS region transcription start site region 29888
Tssr29889 3 88030872 to 88030885 13 + TSS region transcription start site region 29889
Gm19439 3 88030878 to 88033150 2272 + lncRNA gene predicted gene, 19439
Cpgi13357 3 88043089 to 88043548 459 CpG island CpG island 13357
Tssr29890 3 88043098 to 88043128 30 + TSS region transcription start site region 29890
Gpatch4 3 88043108 to 88055993 12885 + protein coding gene G patch domain containing 4
Tssr29891 3 88043131 to 88043150 19 + TSS region transcription start site region 29891
Tssr29892 3 88055123 to 88055134 11 + TSS region transcription start site region 29892
Tssr29893 3 88055484 to 88055492 8 + TSS region transcription start site region 29893
Naxe 3 88056520 to 88058495 1975 - protein coding gene NAD(P)HX epimerase
Cpgi13358 3 88057864 to 88058736 872 CpG island CpG island 13358
Tssr33979 3 88058232 to 88058245 13 - TSS region transcription start site region 33979
Tssr33980 3 88058446 to 88058535 89 - TSS region transcription start site region 33980
Ttc24 3 88069410 to 88078304 8894 - protein coding gene tetratricopeptide repeat domain 24
Tssr33981 3 88072039 to 88072042 3 - TSS region transcription start site region 33981
Tssr33982 3 88072046 to 88072068 22 - TSS region transcription start site region 33982
Tssr33983 3 88078295 to 88078328 33 - TSS region transcription start site region 33983
Cpgi13359 3 88081873 to 88082393 520 CpG island CpG island 13359
Tssr29894 3 88081997 to 88082051 54 + TSS region transcription start site region 29894
Iqgap3 3 88082051 to 88121048 38997 + protein coding gene IQ motif containing GTPase activating protein 3
D3Mit210 3 88089061 to 88089168 107 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 210
Gm40087 3 88133515 to 88138419 4904 + lncRNA gene predicted gene, 40087
Tssr29895 3 88138789 to 88138805 16 + TSS region transcription start site region 29895
Cpgi13360 3 88138870 to 88139433 563 CpG island CpG island 13360
Tssr29896 3 88138891 to 88138904 13 + TSS region transcription start site region 29896
Tssr33984 3 88139433 to 88139467 34 - TSS region transcription start site region 33984
Tssr33985 3 88139929 to 88139945 16 - TSS region transcription start site region 33985
Tssr29897 3 88140837 to 88140855 18 + TSS region transcription start site region 29897
Tssr29898 3 88141160 to 88141164 4 + TSS region transcription start site region 29898
Tssr33986 3 88141626 to 88141639 13 - TSS region transcription start site region 33986
Tssr29899 3 88141767 to 88141771 4 + TSS region transcription start site region 29899
Cpgi13361 3 88141879 to 88143560 1681 CpG island CpG island 13361
Tssr29900 3 88141973 to 88142024 51 + TSS region transcription start site region 29900
Tssr33987 3 88142174 to 88142194 20 - TSS region transcription start site region 33987
Tssr29901 3 88142328 to 88142483 155 + TSS region transcription start site region 29901
Mef2d 3 88142372 to 88172086 29714 + protein coding gene myocyte enhancer factor 2D
Tssr29902 3 88142536 to 88142545 9 + TSS region transcription start site region 29902
Tssr29903 3 88142547 to 88142585 38 + TSS region transcription start site region 29903
Tssr29904 3 88142702 to 88142745 43 + TSS region transcription start site region 29904
Tssr29905 3 88142802 to 88142822 20 + TSS region transcription start site region 29905
Tssr33988 3 88143209 to 88143229 20 - TSS region transcription start site region 33988
Tssr29906 3 88143349 to 88143448 99 + TSS region transcription start site region 29906
Tssr33989 3 88143620 to 88143631 11 - TSS region transcription start site region 33989
Tssr29907 3 88144332 to 88144340 8 + TSS region transcription start site region 29907
Tssr29908 3 88145582 to 88145600 18 + TSS region transcription start site region 29908
Tssr29909 3 88158079 to 88158094 15 + TSS region transcription start site region 29909
Tssr29910 3 88159724 to 88159731 7 + TSS region transcription start site region 29910
Tssr33990 3 88161304 to 88161324 20 - TSS region transcription start site region 33990
Tssr29911 3 88163043 to 88163053 10 + TSS region transcription start site region 29911
Tssr29912 3 88167572 to 88167588 16 + TSS region transcription start site region 29912
Tssr29913 3 88167594 to 88167654 60 + TSS region transcription start site region 29913
Tssr29914 3 88170324 to 88170336 12 + TSS region transcription start site region 29914
1700113A16Rik 3 88171560 to 88177785 6225 - antisense lncRNA gene RIKEN cDNA 1700113A16 gene
Cpgi13362 3 88177544 to 88178371 827 CpG island CpG island 13362
Tssr33991 3 88177671 to 88177783 112 - TSS region transcription start site region 33991
D3Mit74 3 88187246 to 88187394 148 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 74
AI849053 3 88199102 to 88204595 5493 - lincRNA gene expressed sequence AI849053
Tssr29915 3 88200255 to 88200269 14 + TSS region transcription start site region 29915
Tssr29916 3 88200270 to 88200279 9 + TSS region transcription start site region 29916
Tssr29917 3 88200285 to 88200318 33 + TSS region transcription start site region 29917
Cpgi13363 3 88200298 to 88201591 1293 CpG island CpG island 13363
Tssr29918 3 88200323 to 88200348 25 + TSS region transcription start site region 29918
Tssr29919 3 88200607 to 88200629 22 + TSS region transcription start site region 29919
AW047730 3 88200623 to 88203481 2858 + unclassified non-coding RNA gene expressed sequence AW047730
Tssr29920 3 88206525 to 88206537 12 + TSS region transcription start site region 29920
Tssr29921 3 88206786 to 88206824 38 + TSS region transcription start site region 29921
Gm3764 3 88206813 to 88229959 23146 + lincRNA gene predicted gene 3764
Tssr29922 3 88207100 to 88207135 35 + TSS region transcription start site region 29922
Cpgi13364 3 88207218 to 88207584 366 CpG island CpG island 13364
Tssr29923 3 88207255 to 88207305 50 + TSS region transcription start site region 29923
Tssr29924 3 88207308 to 88207328 20 + TSS region transcription start site region 29924
Tssr29925 3 88212739 to 88212771 32 + TSS region transcription start site region 29925
Cpgi13365 3 88214387 to 88216175 1788 CpG island CpG island 13365
Tssr29926 3 88214474 to 88214491 17 + TSS region transcription start site region 29926
Mir3093 3 88215171 to 88215257 86 + miRNA gene microRNA 3093
Gm25641 3 88215589 to 88215696 107 - miRNA gene predicted gene, 25641
Mir9-1 3 88215598 to 88215686 88 + miRNA gene microRNA 9-1
Tssr29927 3 88215672 to 88215680 8 + TSS region transcription start site region 29927
Tssr29928 3 88218241 to 88218246 5 + TSS region transcription start site region 29928
4931402H11Rik 3 88227410 to 88232335 4925 unclassified non-coding RNA gene RIKEN cDNA 4931402H11 gene
Tssr29929 3 88227434 to 88227438 4 + TSS region transcription start site region 29929
Tssr29930 3 88228329 to 88228340 11 + TSS region transcription start site region 29930
Cpgi13366 3 88240735 to 88241875 1140 CpG island CpG island 13366
Rhbg 3 88242874 to 88254709 11835 - protein coding gene Rhesus blood group-associated B glycoprotein
Gm38392 3 88243380 to 88287210 43830 - protein coding gene predicted gene, 38392
Cpgi13367 3 88245854 to 88246065 211 CpG island CpG island 13367
Cpgi13368 3 88254322 to 88254898 576 CpG island CpG island 13368
Tssr33992 3 88254675 to 88254689 14 - TSS region transcription start site region 33992
Tssr33993 3 88254706 to 88254722 16 - TSS region transcription start site region 33993
Tssr33994 3 88276901 to 88276921 20 - TSS region transcription start site region 33994
Tssr29931 3 88277063 to 88277081 18 + TSS region transcription start site region 29931
Tssr29932 3 88278448 to 88278459 11 + TSS region transcription start site region 29932
Tssr33995 3 88281270 to 88281286 16 - TSS region transcription start site region 33995
Tssr931 3 88282037 to 88282044 7 + TSS region transcription start site region 931
Tsacc 3 88282757 to 88296999 14242 - protein coding gene TSSK6 activating co-chaperone