Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:87821157-87991170

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89 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm40086 3 87820538 to 87823074 2536 + lncRNA gene predicted gene, 40086
Gm32470 3 87824755 to 87831268 6513 + lncRNA gene predicted gene, 32470
Tssr33957 3 87832312 to 87832319 7 - TSS region transcription start site region 33957
Tssr29832 3 87845295 to 87845299 4 + TSS region transcription start site region 29832
Tssr33958 3 87846589 to 87846601 12 - TSS region transcription start site region 33958
Tssr29833 3 87846725 to 87846772 47 + TSS region transcription start site region 29833
Sh2d2a 3 87846755 to 87855722 8967 + protein coding gene SH2 domain containing 2A
Tssr29834 3 87846778 to 87846788 10 + TSS region transcription start site region 29834
Tssr33959 3 87846787 to 87846801 14 - TSS region transcription start site region 33959
Tssr29835 3 87846840 to 87846854 14 + TSS region transcription start site region 29835
Tssr29836 3 87846881 to 87846893 12 + TSS region transcription start site region 29836
Tssr33960 3 87846884 to 87846905 21 - TSS region transcription start site region 33960
Tssr29837 3 87846988 to 87846999 11 + TSS region transcription start site region 29837
Tssr29838 3 87847004 to 87847067 63 + TSS region transcription start site region 29838
Tssr29839 3 87847136 to 87847147 11 + TSS region transcription start site region 29839
Tssr33961 3 87849105 to 87849126 21 - TSS region transcription start site region 33961
Tssr29840 3 87857971 to 87857978 7 + TSS region transcription start site region 29840
Tssr29841 3 87858003 to 87858014 11 + TSS region transcription start site region 29841
Prcc 3 87858903 to 87885562 26659 - protein coding gene papillary renal cell carcinoma (translocation-associated)
Tssr33962 3 87870113 to 87870140 27 - TSS region transcription start site region 33962
Cpgi13344 3 87884755 to 87885923 1168 CpG island CpG island 13344
Tssr33963 3 87885558 to 87885608 50 - TSS region transcription start site region 33963
Cpgi13345 3 87905911 to 87907541 1630 CpG island CpG island 13345
Tssr927 3 87906070 to 87906091 21 + TSS region transcription start site region 927
Tssr928 3 87906127 to 87906145 18 + TSS region transcription start site region 928
Tssr929 3 87906157 to 87906170 13 + TSS region transcription start site region 929
Tssr29842 3 87906317 to 87906326 9 + TSS region transcription start site region 29842
Hdgf 3 87906321 to 87916132 9811 + protein coding gene heparin binding growth factor
Tssr29843 3 87906333 to 87906356 23 + TSS region transcription start site region 29843
Tssr29844 3 87906362 to 87906414 52 + TSS region transcription start site region 29844
Tssr29845 3 87906530 to 87906607 77 + TSS region transcription start site region 29845
Tssr29846 3 87906608 to 87906637 29 + TSS region transcription start site region 29846
Tssr29847 3 87906842 to 87906856 14 + TSS region transcription start site region 29847
Tssr29848 3 87906891 to 87906909 18 + TSS region transcription start site region 29848
Tssr29849 3 87906913 to 87906933 20 + TSS region transcription start site region 29849
Tssr29850 3 87914918 to 87914945 27 + TSS region transcription start site region 29850
Tssr29851 3 87915056 to 87915080 24 + TSS region transcription start site region 29851
Tssr29852 3 87915081 to 87915095 14 + TSS region transcription start site region 29852
Tssr29853 3 87915161 to 87915183 22 + TSS region transcription start site region 29853
Tssr29854 3 87915276 to 87915327 51 + TSS region transcription start site region 29854
Tssr29855 3 87915484 to 87915512 28 + TSS region transcription start site region 29855
Tssr29856 3 87915537 to 87915548 11 + TSS region transcription start site region 29856
Tssr29857 3 87915560 to 87915572 12 + TSS region transcription start site region 29857
Tssr29858 3 87915578 to 87915603 25 + TSS region transcription start site region 29858
Tssr29859 3 87915612 to 87915635 23 + TSS region transcription start site region 29859
Tssr29860 3 87915750 to 87915783 33 + TSS region transcription start site region 29860
Tssr29861 3 87915789 to 87915805 16 + TSS region transcription start site region 29861
Cpgi13346 3 87919355 to 87919857 502 CpG island CpG island 13346
Tssr29862 3 87919490 to 87919497 7 + TSS region transcription start site region 29862
Mrpl24 3 87919506 to 87923672 4166 + protein coding gene mitochondrial ribosomal protein L24
Tssr29863 3 87919515 to 87919526 11 + TSS region transcription start site region 29863
Tssr29864 3 87919528 to 87919558 30 + TSS region transcription start site region 29864
Tssr29865 3 87919567 to 87919576 9 + TSS region transcription start site region 29865
Tssr29866 3 87919660 to 87919677 17 + TSS region transcription start site region 29866
Tssr29867 3 87919693 to 87919713 20 + TSS region transcription start site region 29867
Tssr29868 3 87921895 to 87921921 26 + TSS region transcription start site region 29868
Rrnad1 3 87922601 to 87930582 7981 - protein coding gene ribosomal RNA adenine dimethylase domain containing 1
Cpgi13347 3 87929822 to 87930910 1088 CpG island CpG island 13347
Tssr33964 3 87930121 to 87930182 61 - TSS region transcription start site region 33964
Tssr29869 3 87930204 to 87930234 30 + TSS region transcription start site region 29869
Tssr29870 3 87930256 to 87930350 94 + TSS region transcription start site region 29870
Isg20l2 3 87930314 to 87940686 10372 + protein coding gene interferon stimulated exonuclease gene 20-like 2
Tssr29871 3 87930437 to 87930449 12 + TSS region transcription start site region 29871
Tssr29872 3 87930516 to 87930600 84 + TSS region transcription start site region 29872
Tssr29873 3 87932165 to 87932184 19 + TSS region transcription start site region 29873
Cpgi13348 3 87948330 to 87948742 412 CpG island CpG island 13348
Tssr29874 3 87948687 to 87948704 17 + TSS region transcription start site region 29874
Crabp2 3 87948693 to 87953372 4679 + protein coding gene cellular retinoic acid binding protein II
Tssr29875 3 87952532 to 87952555 23 + TSS region transcription start site region 29875
Tssr29876 3 87953046 to 87953056 10 + TSS region transcription start site region 29876
Tssr29877 3 87953062 to 87953071 9 + TSS region transcription start site region 29877
Tssr29878 3 87953085 to 87953097 12 + TSS region transcription start site region 29878
Gm32518 3 87960084 to 87965726 5642 + lncRNA gene predicted gene, 32518
Cpgi13349 3 87960933 to 87961147 214 CpG island CpG island 13349
Gm3745 3 87968186 to 87968606 420 + pseudogene predicted gene 3745
Cpgi13350 3 87970793 to 87972323 1530 CpG island CpG island 13350
Tssr29879 3 87971071 to 87971089 18 + TSS region transcription start site region 29879
Nes 3 87971093 to 87980451 9358 + protein coding gene nestin
Tssr930 3 87971145 to 87971150 5 + TSS region transcription start site region 930
Tssr29880 3 87971154 to 87971165 11 + TSS region transcription start site region 29880
Tssr29881 3 87975767 to 87975796 29 + TSS region transcription start site region 29881
Tssr29882 3 87975947 to 87975962 15 + TSS region transcription start site region 29882
Tssr29883 3 87976023 to 87976045 22 + TSS region transcription start site region 29883
Tssr29884 3 87976108 to 87976119 11 + TSS region transcription start site region 29884
Tssr29885 3 87976220 to 87976246 26 + TSS region transcription start site region 29885
Tssr29886 3 87977209 to 87977213 4 + TSS region transcription start site region 29886
Cpgi13351 3 87986920 to 87987193 273 CpG island CpG island 13351
Bcan 3 87987531 to 88000230 12699 - protein coding gene brevican
Cpgi13352 3 87987925 to 87988487 562 CpG island CpG island 13352