Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:87781840-87911854

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47 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ntrk1 3 87778244 to 87795162 16918 - protein coding gene neurotrophic tyrosine kinase, receptor, type 1
Tssr33955 3 87783289 to 87783311 22 - TSS region transcription start site region 33955
Cpgi13338 3 87783664 to 87783970 306 CpG island CpG island 13338
Cpgi13339 3 87794463 to 87796130 1667 CpG island CpG island 13339
Tssr33956 3 87795206 to 87795222 16 - TSS region transcription start site region 33956
Cpgi13340 3 87796811 to 87797046 235 CpG island CpG island 13340
Tssr29830 3 87796889 to 87796894 5 + TSS region transcription start site region 29830
Tssr29831 3 87796938 to 87796982 44 + TSS region transcription start site region 29831
Insrr 3 87796951 to 87816101 19150 + protein coding gene insulin receptor-related receptor
Cpgi13341 3 87800561 to 87800819 258 CpG island CpG island 13341
Cpgi13342 3 87804052 to 87804546 494 CpG island CpG island 13342
Cpgi13343 3 87809259 to 87810308 1049 CpG island CpG island 13343
Gm40086 3 87820538 to 87823074 2536 + lncRNA gene predicted gene, 40086
Gm32470 3 87824755 to 87831268 6513 + lncRNA gene predicted gene, 32470
Tssr33957 3 87832312 to 87832319 7 - TSS region transcription start site region 33957
Tssr29832 3 87845295 to 87845299 4 + TSS region transcription start site region 29832
Tssr33958 3 87846589 to 87846601 12 - TSS region transcription start site region 33958
Tssr29833 3 87846725 to 87846772 47 + TSS region transcription start site region 29833
Sh2d2a 3 87846755 to 87855722 8967 + protein coding gene SH2 domain containing 2A
Tssr29834 3 87846778 to 87846788 10 + TSS region transcription start site region 29834
Tssr33959 3 87846787 to 87846801 14 - TSS region transcription start site region 33959
Tssr29835 3 87846840 to 87846854 14 + TSS region transcription start site region 29835
Tssr29836 3 87846881 to 87846893 12 + TSS region transcription start site region 29836
Tssr33960 3 87846884 to 87846905 21 - TSS region transcription start site region 33960
Tssr29837 3 87846988 to 87846999 11 + TSS region transcription start site region 29837
Tssr29838 3 87847004 to 87847067 63 + TSS region transcription start site region 29838
Tssr29839 3 87847136 to 87847147 11 + TSS region transcription start site region 29839
Tssr33961 3 87849105 to 87849126 21 - TSS region transcription start site region 33961
Tssr29840 3 87857971 to 87857978 7 + TSS region transcription start site region 29840
Tssr29841 3 87858003 to 87858014 11 + TSS region transcription start site region 29841
Prcc 3 87858903 to 87885562 26659 - protein coding gene papillary renal cell carcinoma (translocation-associated)
Tssr33962 3 87870113 to 87870140 27 - TSS region transcription start site region 33962
Cpgi13344 3 87884755 to 87885923 1168 CpG island CpG island 13344
Tssr33963 3 87885558 to 87885608 50 - TSS region transcription start site region 33963
Cpgi13345 3 87905911 to 87907541 1630 CpG island CpG island 13345
Tssr927 3 87906070 to 87906091 21 + TSS region transcription start site region 927
Tssr928 3 87906127 to 87906145 18 + TSS region transcription start site region 928
Tssr929 3 87906157 to 87906170 13 + TSS region transcription start site region 929
Tssr29842 3 87906317 to 87906326 9 + TSS region transcription start site region 29842
Hdgf 3 87906321 to 87916132 9811 + protein coding gene heparin binding growth factor
Tssr29843 3 87906333 to 87906356 23 + TSS region transcription start site region 29843
Tssr29844 3 87906362 to 87906414 52 + TSS region transcription start site region 29844
Tssr29845 3 87906530 to 87906607 77 + TSS region transcription start site region 29845
Tssr29846 3 87906608 to 87906637 29 + TSS region transcription start site region 29846
Tssr29847 3 87906842 to 87906856 14 + TSS region transcription start site region 29847
Tssr29848 3 87906891 to 87906909 18 + TSS region transcription start site region 29848
Tssr29849 3 87906913 to 87906933 20 + TSS region transcription start site region 29849