Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:87162576-87862585

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130 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Kirrel 3 87078593 to 87174747 96154 - protein coding gene kirre like nephrin family adhesion molecule 1
Cpgi13330 3 87174209 to 87175037 828 CpG island CpG island 13330
Tssr33927 3 87174458 to 87174485 27 - TSS region transcription start site region 33927
Tssr33928 3 87174518 to 87174578 60 - TSS region transcription start site region 33928
Tssr33929 3 87174632 to 87174655 23 - TSS region transcription start site region 33929
Tssr33930 3 87174657 to 87174679 22 - TSS region transcription start site region 33930
Gm10705 3 87207545 to 87208005 460 - pseudogene predicted gene 10705
Tssr33931 3 87208008 to 87208033 25 - TSS region transcription start site region 33931
Cpgi13331 3 87214255 to 87214544 289 CpG island CpG island 13331
Tssr33932 3 87249659 to 87249673 14 - TSS region transcription start site region 33932
Fcrls 3 87250758 to 87263738 12980 - protein coding gene Fc receptor-like S, scavenger receptor
Tssr33933 3 87254340 to 87254345 5 - TSS region transcription start site region 33933
hsh 3 87263147 to 90359778 3096631 heritable phenotypic marker hind shaker
Cia5a 3 87263147 to 89232787 1969640 QTL collagen induced arthritis QTL 5a
D3Mit187 3 87263147 to 87263268 121 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 187
D3Dcr12 3 87263153 to 87263268 115 DNA segment DNA Segment, Chr 3, Derry C. Roopenian 12
Tssr33934 3 87263518 to 87263591 73 - TSS region transcription start site region 33934
Tssr33935 3 87263593 to 87263594 1 - TSS region transcription start site region 33935
Tssr33936 3 87263596 to 87263607 11 - TSS region transcription start site region 33936
Tssr33937 3 87263654 to 87263662 8 - TSS region transcription start site region 33937
Tssr33938 3 87263703 to 87263714 11 - TSS region transcription start site region 33938
Tssr29797 3 87290332 to 87290359 27 + TSS region transcription start site region 29797
Gm31879 3 87290337 to 87300907 10570 + lncRNA gene predicted gene, 31879
D3Mit40 3 87301597 to 87301735 138 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 40
Sle11 3 87301597 to 87301735 138 QTL systematic lupus erythematosus susceptibility 11
D3Dcr13 3 87301627 to 87301729 102 DNA segment DNA Segment, Chr 3, Derry C. Roopenian 13
Tssr33939 3 87330856 to 87330866 10 - TSS region transcription start site region 33939
Gm31940 3 87353997 to 87377600 23603 - lncRNA gene predicted gene, 31940
Tssr29798 3 87357874 to 87357890 16 + TSS region transcription start site region 29798
Cd5l 3 87357881 to 87371073 13192 + protein coding gene CD5 antigen-like
Tssr29799 3 87357903 to 87357942 39 + TSS region transcription start site region 29799
Tssr29800 3 87357963 to 87357981 18 + TSS region transcription start site region 29800
Tssr29801 3 87376381 to 87376393 12 + TSS region transcription start site region 29801
Fcrl1 3 87376387 to 87402934 26547 + protein coding gene Fc receptor-like 1
Tssr29802 3 87376396 to 87376410 14 + TSS region transcription start site region 29802
Tssr29803 3 87376441 to 87376459 18 + TSS region transcription start site region 29803
Tssr29804 3 87376460 to 87376465 5 + TSS region transcription start site region 29804
Tssr33940 3 87377806 to 87377821 15 - TSS region transcription start site region 33940
Tssr29805 3 87377956 to 87377960 4 + TSS region transcription start site region 29805
Tssr29806 3 87408437 to 87408446 9 + TSS region transcription start site region 29806
Gm40084 3 87411410 to 87414787 3377 + lncRNA gene predicted gene, 40084
Tssr29807 3 87435764 to 87435787 23 + TSS region transcription start site region 29807
Fcrl5 3 87435777 to 87500678 64901 + protein coding gene Fc receptor-like 5
Tssr29808 3 87435798 to 87435819 21 + TSS region transcription start site region 29808
Tssr29809 3 87435820 to 87435829 9 + TSS region transcription start site region 29809
Gm40085 3 87487021 to 87512192 25171 - lncRNA gene predicted gene, 40085
Tssr925 3 87487392 to 87487396 4 + TSS region transcription start site region 925
Gm31998 3 87508525 to 87513181 4656 + lncRNA gene predicted gene, 31998
Tssr33941 3 87512576 to 87512585 9 - TSS region transcription start site region 33941
Tssr33942 3 87512586 to 87512601 15 - TSS region transcription start site region 33942
Tssr33943 3 87512637 to 87512649 12 - TSS region transcription start site region 33943
Tssr926 3 87512815 to 87512828 13 + TSS region transcription start site region 926
Tssr29810 3 87518712 to 87518715 3 + TSS region transcription start site region 29810
Cpgi13332 3 87525269 to 87526204 935 CpG island CpG island 13332
Etv3 3 87525571 to 87540158 14587 + protein coding gene ets variant 3
Tssr29811 3 87525572 to 87525643 71 + TSS region transcription start site region 29811
Tssr29812 3 87525646 to 87525667 21 + TSS region transcription start site region 29812
Tssr29813 3 87526405 to 87526432 27 + TSS region transcription start site region 29813
Tssr29814 3 87526509 to 87526532 23 + TSS region transcription start site region 29814
Tssr29815 3 87527228 to 87527239 11 + TSS region transcription start site region 29815
Tssr29816 3 87527299 to 87527306 7 + TSS region transcription start site region 29816
Tssr29817 3 87527318 to 87527327 9 + TSS region transcription start site region 29817
Tssr29818 3 87527370 to 87527438 68 + TSS region transcription start site region 29818
Tssr29819 3 87535650 to 87535663 13 + TSS region transcription start site region 29819
Tssr29820 3 87535718 to 87535730 12 + TSS region transcription start site region 29820
Tssr29821 3 87535757 to 87535772 15 + TSS region transcription start site region 29821
Tssr29822 3 87535875 to 87535892 17 + TSS region transcription start site region 29822
Tssr29823 3 87536056 to 87536073 17 + TSS region transcription start site region 29823
Tssr29824 3 87536196 to 87536210 14 + TSS region transcription start site region 29824
Tssr29825 3 87539333 to 87539344 11 + TSS region transcription start site region 29825
Etv3l 3 87554910 to 87555434 524 + protein coding gene ets variant 3-like
Gm25167 3 87582672 to 87582791 119 - snoRNA gene predicted gene, 25167
Cpgi13333 3 87617076 to 87617897 821 CpG island CpG island 13333
Gm24109 3 87617399 to 87617501 102 + miRNA gene predicted gene, 24109
Tssr29826 3 87617541 to 87617613 72 + TSS region transcription start site region 29826
Arhgef11 3 87617559 to 87738034 120475 + protein coding gene Rho guanine nucleotide exchange factor (GEF) 11
Tssr29827 3 87620917 to 87620922 5 + TSS region transcription start site region 29827
Tssr29828 3 87629487 to 87629496 9 + TSS region transcription start site region 29828
Gm19242 3 87648428 to 87648673 245 - pseudogene predicted gene, 19242
Tssr29829 3 87650960 to 87650963 3 + TSS region transcription start site region 29829
Gm6570 3 87679643 to 87680025 382 - protein coding gene predicted gene 6570
Tssr33944 3 87684633 to 87684644 11 - TSS region transcription start site region 33944
Lrrc71 3 87736923 to 87748623 11700 - protein coding gene leucine rich repeat containing 71
Cpgi13334 3 87742593 to 87743065 472 CpG island CpG island 13334
Tssr33945 3 87744267 to 87744269 2 - TSS region transcription start site region 33945
Tssr33946 3 87748533 to 87748555 22 - TSS region transcription start site region 33946
Tssr33947 3 87748556 to 87748568 12 - TSS region transcription start site region 33947
Tssr33948 3 87748577 to 87748598 21 - TSS region transcription start site region 33948
Tssr33949 3 87748599 to 87748615 16 - TSS region transcription start site region 33949
Tssr33950 3 87748619 to 87748630 11 - TSS region transcription start site region 33950
Pear1 3 87749097 to 87769110 20013 - protein coding gene platelet endothelial aggregation receptor 1
Tssr33951 3 87753257 to 87753259 2 - TSS region transcription start site region 33951
Cpgi13335 3 87755863 to 87756852 989 CpG island CpG island 13335
Cpgi13336 3 87768777 to 87769195 418 CpG island CpG island 13336
Tssr33952 3 87768932 to 87768960 28 - TSS region transcription start site region 33952
Tssr33953 3 87768967 to 87768975 8 - TSS region transcription start site region 33953
Tssr33954 3 87769059 to 87769068 9 - TSS region transcription start site region 33954
Ntrk1 3 87778244 to 87795162 16918 - protein coding gene neurotrophic tyrosine kinase, receptor, type 1
Cpgi13337 3 87778417 to 87778722 305 CpG island CpG island 13337
Tssr33955 3 87783289 to 87783311 22 - TSS region transcription start site region 33955
Cpgi13338 3 87783664 to 87783970 306 CpG island CpG island 13338
Cpgi13339 3 87794463 to 87796130 1667 CpG island CpG island 13339
Tssr33956 3 87795206 to 87795222 16 - TSS region transcription start site region 33956
Cpgi13340 3 87796811 to 87797046 235 CpG island CpG island 13340
Tssr29830 3 87796889 to 87796894 5 + TSS region transcription start site region 29830
Tssr29831 3 87796938 to 87796982 44 + TSS region transcription start site region 29831
Insrr 3 87796951 to 87816101 19150 + protein coding gene insulin receptor-related receptor
Cpgi13341 3 87800561 to 87800819 258 CpG island CpG island 13341
Cpgi13342 3 87804052 to 87804546 494 CpG island CpG island 13342
Cpgi13343 3 87809259 to 87810308 1049 CpG island CpG island 13343
Gm40086 3 87820538 to 87823074 2536 + lncRNA gene predicted gene, 40086
Gm32470 3 87824755 to 87831268 6513 + lncRNA gene predicted gene, 32470
Tssr33957 3 87832312 to 87832319 7 - TSS region transcription start site region 33957
Tssr29832 3 87845295 to 87845299 4 + TSS region transcription start site region 29832
Tssr33958 3 87846589 to 87846601 12 - TSS region transcription start site region 33958
Tssr29833 3 87846725 to 87846772 47 + TSS region transcription start site region 29833
Sh2d2a 3 87846755 to 87855722 8967 + protein coding gene SH2 domain containing 2A
Tssr29834 3 87846778 to 87846788 10 + TSS region transcription start site region 29834
Tssr33959 3 87846787 to 87846801 14 - TSS region transcription start site region 33959
Tssr29835 3 87846840 to 87846854 14 + TSS region transcription start site region 29835
Tssr29836 3 87846881 to 87846893 12 + TSS region transcription start site region 29836
Tssr33960 3 87846884 to 87846905 21 - TSS region transcription start site region 33960
Tssr29837 3 87846988 to 87846999 11 + TSS region transcription start site region 29837
Tssr29838 3 87847004 to 87847067 63 + TSS region transcription start site region 29838
Tssr29839 3 87847136 to 87847147 11 + TSS region transcription start site region 29839
Tssr33961 3 87849105 to 87849126 21 - TSS region transcription start site region 33961
Tssr29840 3 87857971 to 87857978 7 + TSS region transcription start site region 29840
Tssr29841 3 87858003 to 87858014 11 + TSS region transcription start site region 29841
Prcc 3 87858903 to 87885562 26659 - protein coding gene papillary renal cell carcinoma (translocation-associated)
Sle18 3 125522587 to 87301597 -38220990 QTL systematic lupus erythematosus susceptibility 18