Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:8713897-9133912

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49 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi12963 3 8717532 to 8717724 192 CpG island CpG island 12963
D3Mit264 3 8721265 to 8721372 107 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 264
Skmw1 3 8721265 to 8721372 107 QTL skeletal muscle weight 1
C230057A21Rik 3 8732870 to 8736360 3490 - lincRNA gene RIKEN cDNA C230057A21 gene
Tssr28333 3 8743642 to 8743692 50 + TSS region transcription start site region 28333
1700042O13Rik 3 8743676 to 8746823 3147 lncRNA gene RIKEN cDNA 1700042O13 gene
Gm37647 3 8743682 to 8746824 3142 - unclassified gene predicted gene, 37647
Tssr28334 3 8746960 to 8746989 29 + TSS region transcription start site region 28334
Cpgi12964 3 8766717 to 8767846 1129 CpG island CpG island 12964
Tssr28335 3 8767140 to 8767152 12 + TSS region transcription start site region 28335
Cpgi12965 3 8785773 to 8786060 287 CpG island CpG island 12965
Mrps28 3 8802146 to 8923857 121711 - protein coding gene mitochondrial ribosomal protein S28
Cpgi12966 3 8805741 to 8806051 310 CpG island CpG island 12966
Tssr32558 3 8829696 to 8829707 11 - TSS region transcription start site region 32558
Tssr32559 3 8829714 to 8829731 17 - TSS region transcription start site region 32559
Tssr32560 3 8863270 to 8863302 32 - TSS region transcription start site region 32560
Gm41995 3 8866119 to 8881665 15546 + lncRNA gene predicted gene, 41995
Tssr28336 3 8881143 to 8881152 9 + TSS region transcription start site region 28336
Gm15467 3 8881199 to 8881643 444 + pseudogene predicted gene 15467
Gm15466 3 8882238 to 8882570 332 - pseudogene predicted gene 15466
Tssr32561 3 8882741 to 8882744 3 - TSS region transcription start site region 32561
Tssr32562 3 8913985 to 8913990 5 - TSS region transcription start site region 32562
Cpgi12967 3 8923182 to 8924095 913 CpG island CpG island 12967
Tssr28337 3 8923550 to 8923569 19 + TSS region transcription start site region 28337
Tssr32563 3 8923796 to 8923822 26 - TSS region transcription start site region 32563
Tssr28338 3 8923897 to 8923912 15 + TSS region transcription start site region 28338
9130403I23Rik 3 8925589 to 8928268 2679 unclassified gene RIKEN cDNA 9130403I23 gene
Tpd52 3 8929431 to 9004771 75340 - protein coding gene tumor protein D52
Tssr32564 3 8936370 to 8936374 4 - TSS region transcription start site region 32564
Tssr32565 3 8937981 to 8937985 4 - TSS region transcription start site region 32565
Cpgi12968 3 8963994 to 8964252 258 CpG island CpG island 12968
Tssr32566 3 8964037 to 8964101 64 - TSS region transcription start site region 32566
Tssr32567 3 8964222 to 8964240 18 - TSS region transcription start site region 32567
Tssr32568 3 8964367 to 8964401 34 - TSS region transcription start site region 32568
Tssr32569 3 9001396 to 9001399 3 - TSS region transcription start site region 32569
Tssr32570 3 9003831 to 9003856 25 - TSS region transcription start site region 32570
Cpgi12969 3 9003898 to 9004871 973 CpG island CpG island 12969
Tssr32571 3 9004422 to 9004428 6 - TSS region transcription start site region 32571
Tssr32572 3 9004454 to 9004467 13 - TSS region transcription start site region 32572
Tssr32573 3 9004472 to 9004515 43 - TSS region transcription start site region 32573
Tssr32574 3 9004624 to 9004635 11 - TSS region transcription start site region 32574
Tssr32575 3 9004686 to 9004750 64 - TSS region transcription start site region 32575
Tssr32576 3 9004760 to 9004771 11 - TSS region transcription start site region 32576
Gm46832 3 9027570 to 9029901 2331 + lncRNA gene predicted gene, 46832
Tssr28339 3 9028360 to 9028371 11 + TSS region transcription start site region 28339
Tssr28340 3 9034090 to 9034117 27 + TSS region transcription start site region 28340
Gm37616 3 9047171 to 9047492 321 - pseudogene predicted gene, 37616
4930539M17Rik 3 9061964 to 9071074 9110 + lincRNA gene RIKEN cDNA 4930539M17 gene
Gm8860 3 9072767 to 9073211 444 + pseudogene predicted gene 8860