Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.



Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:86978593-87274747

39 genes found.

Gene symbol	Chromo- some	Coordinates (bp, mm10)	Size (bp)	Strand	Feature Type	Gene name
Tssr29796	3	86986562 to 86986584	22	+	TSS region	transcription start site region 29796
Cd1d2	3	86986586 to 86989533	2947	+	polymorphic pseudogene	CD1d2 antigen
Cd1d1	3	86995834 to 86999340	3506	-	protein coding gene	CD1d1 antigen
Tssr33919	3	86998997 to 86999033	36	-	TSS region	transcription start site region 33919
Tssr33920	3	86999264 to 86999275	11	-	TSS region	transcription start site region 33920
Tssr33921	3	86999284 to 86999334	50	-	TSS region	transcription start site region 33921
Tssr33922	3	86999347 to 86999372	25	-	TSS region	transcription start site region 33922
Tssr33923	3	87012244 to 87012253	9	-	TSS region	transcription start site region 33923
Gm8869	3	87022937 to 87023883	946	-	pseudogene	predicted gene 8869
Gm18403	3	87054359 to 87054887	528	+	pseudogene	predicted gene, 18403
Gm37575	3	87060125 to 87060433	308	+	pseudogene	predicted gene, 37575
Gm24472	3	87066893 to 87067024	131	+	snoRNA gene	predicted gene, 24472
Kirrel	3	87078593 to 87174747	96154	-	protein coding gene	kirre like nephrin family adhesion molecule 1
Tssr33924	3	87112271 to 87112274	3	-	TSS region	transcription start site region 33924
Tssr33925	3	87112436 to 87112445	9	-	TSS region	transcription start site region 33925
Tssr33926	3	87112463 to 87112469	6	-	TSS region	transcription start site region 33926
D3Mit155	3	87126643 to 87126775	132		DNA segment	DNA segment, Chr 3, Massachusetts Institute of Technology 155
D3Mit155.1	3	87126737 to 87126846	109		DNA segment	DNA segment, Chr 3, Massachusetts Institute of Technology 155.1
Gm37855	3	87157693 to 87162455	4762	+	lincRNA gene	predicted gene, 37855
Cpgi13330	3	87174209 to 87175037	828		CpG island	CpG island 13330
Tssr33927	3	87174458 to 87174485	27	-	TSS region	transcription start site region 33927
Tssr33928	3	87174518 to 87174578	60	-	TSS region	transcription start site region 33928
Tssr33929	3	87174632 to 87174655	23	-	TSS region	transcription start site region 33929
Tssr33930	3	87174657 to 87174679	22	-	TSS region	transcription start site region 33930
Gm10705	3	87207545 to 87208005	460	-	pseudogene	predicted gene 10705
Tssr33931	3	87208008 to 87208033	25	-	TSS region	transcription start site region 33931
Cpgi13331	3	87214255 to 87214544	289		CpG island	CpG island 13331
Tssr33932	3	87249659 to 87249673	14	-	TSS region	transcription start site region 33932
Fcrls	3	87250758 to 87263738	12980	-	protein coding gene	Fc receptor-like S, scavenger receptor
Tssr33933	3	87254340 to 87254345	5	-	TSS region	transcription start site region 33933
hsh	3	87263147 to 90359778	3096631		heritable phenotypic marker	hind shaker
D3Mit187	3	87263147 to 87263268	121		DNA segment	DNA segment, Chr 3, Massachusetts Institute of Technology 187
Cia5a	3	87263147 to 89232787	1969640		QTL	collagen induced arthritis QTL 5a
D3Dcr12	3	87263153 to 87263268	115		DNA segment	DNA Segment, Chr 3, Derry C. Roopenian 12
Tssr33934	3	87263518 to 87263591	73	-	TSS region	transcription start site region 33934
Tssr33935	3	87263593 to 87263594	1	-	TSS region	transcription start site region 33935
Tssr33936	3	87263596 to 87263607	11	-	TSS region	transcription start site region 33936
Tssr33937	3	87263654 to 87263662	8	-	TSS region	transcription start site region 33937
Tssr33938	3	87263703 to 87263714	11	-	TSS region	transcription start site region 33938