Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:86879657-87469679

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78 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Dclk2 3 86786151 to 86920852 134701 - protein coding gene doublecortin-like kinase 2
Tssr33911 3 86899433 to 86899438 5 - TSS region transcription start site region 33911
Tssr33912 3 86902005 to 86902016 11 - TSS region transcription start site region 33912
Cpgi13327 3 86915290 to 86915537 247 CpG island CpG island 13327
Cpgi13328 3 86919523 to 86921109 1586 CpG island CpG island 13328
Tssr33913 3 86920333 to 86920348 15 - TSS region transcription start site region 33913
Tssr33914 3 86920363 to 86920390 27 - TSS region transcription start site region 33914
Tssr33915 3 86920395 to 86920413 18 - TSS region transcription start site region 33915
Tssr33916 3 86920488 to 86920535 47 - TSS region transcription start site region 33916
Tssr33917 3 86920543 to 86920565 22 - TSS region transcription start site region 33917
Tssr33918 3 86920830 to 86920977 147 - TSS region transcription start site region 33918
Cpgi13329 3 86921433 to 86921602 169 CpG island CpG island 13329
Gm23376 3 86930743 to 86930902 159 + snRNA gene predicted gene, 23376
Gm37207 3 86933368 to 86933663 295 - pseudogene predicted gene, 37207
Tssr29796 3 86986562 to 86986584 22 + TSS region transcription start site region 29796
Cd1d2 3 86986586 to 86989533 2947 + polymorphic pseudogene CD1d2 antigen
Cd1d1 3 86995834 to 86999340 3506 - protein coding gene CD1d1 antigen
Tssr33919 3 86998997 to 86999033 36 - TSS region transcription start site region 33919
Tssr33920 3 86999264 to 86999275 11 - TSS region transcription start site region 33920
Tssr33921 3 86999284 to 86999334 50 - TSS region transcription start site region 33921
Tssr33922 3 86999347 to 86999372 25 - TSS region transcription start site region 33922
Tssr33923 3 87012244 to 87012253 9 - TSS region transcription start site region 33923
Gm8869 3 87022937 to 87023883 946 - pseudogene predicted gene 8869
Gm18403 3 87054359 to 87054887 528 + pseudogene predicted gene, 18403
Gm37575 3 87060125 to 87060433 308 + pseudogene predicted gene, 37575
Gm24472 3 87066893 to 87067024 131 + snoRNA gene predicted gene, 24472
Kirrel 3 87078593 to 87174747 96154 - protein coding gene kirre like nephrin family adhesion molecule 1
Tssr33924 3 87112271 to 87112274 3 - TSS region transcription start site region 33924
Tssr33925 3 87112436 to 87112445 9 - TSS region transcription start site region 33925
Tssr33926 3 87112463 to 87112469 6 - TSS region transcription start site region 33926
D3Mit155 3 87126643 to 87126775 132 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 155
D3Mit155.1 3 87126737 to 87126846 109 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 155.1
Gm37855 3 87157693 to 87162455 4762 + lincRNA gene predicted gene, 37855
Cpgi13330 3 87174209 to 87175037 828 CpG island CpG island 13330
Tssr33927 3 87174458 to 87174485 27 - TSS region transcription start site region 33927
Tssr33928 3 87174518 to 87174578 60 - TSS region transcription start site region 33928
Tssr33929 3 87174632 to 87174655 23 - TSS region transcription start site region 33929
Tssr33930 3 87174657 to 87174679 22 - TSS region transcription start site region 33930
Gm10705 3 87207545 to 87208005 460 - pseudogene predicted gene 10705
Tssr33931 3 87208008 to 87208033 25 - TSS region transcription start site region 33931
Cpgi13331 3 87214255 to 87214544 289 CpG island CpG island 13331
Tssr33932 3 87249659 to 87249673 14 - TSS region transcription start site region 33932
Fcrls 3 87250758 to 87263738 12980 - protein coding gene Fc receptor-like S, scavenger receptor
Tssr33933 3 87254340 to 87254345 5 - TSS region transcription start site region 33933
Cia5a 3 87263147 to 89232787 1969640 QTL collagen induced arthritis QTL 5a
D3Mit187 3 87263147 to 87263268 121 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 187
hsh 3 87263147 to 90359778 3096631 heritable phenotypic marker hind shaker
D3Dcr12 3 87263153 to 87263268 115 DNA segment DNA Segment, Chr 3, Derry C. Roopenian 12
Tssr33934 3 87263518 to 87263591 73 - TSS region transcription start site region 33934
Tssr33935 3 87263593 to 87263594 1 - TSS region transcription start site region 33935
Tssr33936 3 87263596 to 87263607 11 - TSS region transcription start site region 33936
Tssr33937 3 87263654 to 87263662 8 - TSS region transcription start site region 33937
Tssr33938 3 87263703 to 87263714 11 - TSS region transcription start site region 33938
Tssr29797 3 87290332 to 87290359 27 + TSS region transcription start site region 29797
Gm31879 3 87290337 to 87300907 10570 + lncRNA gene predicted gene, 31879
Sle11 3 87301597 to 87301735 138 QTL systematic lupus erythematosus susceptibility 11
D3Mit40 3 87301597 to 87301735 138 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 40
D3Dcr13 3 87301627 to 87301729 102 DNA segment DNA Segment, Chr 3, Derry C. Roopenian 13
Tssr33939 3 87330856 to 87330866 10 - TSS region transcription start site region 33939
Gm31940 3 87353997 to 87377600 23603 - lncRNA gene predicted gene, 31940
Tssr29798 3 87357874 to 87357890 16 + TSS region transcription start site region 29798
Cd5l 3 87357881 to 87371073 13192 + protein coding gene CD5 antigen-like
Tssr29799 3 87357903 to 87357942 39 + TSS region transcription start site region 29799
Tssr29800 3 87357963 to 87357981 18 + TSS region transcription start site region 29800
Tssr29801 3 87376381 to 87376393 12 + TSS region transcription start site region 29801
Fcrl1 3 87376387 to 87402934 26547 + protein coding gene Fc receptor-like 1
Tssr29802 3 87376396 to 87376410 14 + TSS region transcription start site region 29802
Tssr29803 3 87376441 to 87376459 18 + TSS region transcription start site region 29803
Tssr29804 3 87376460 to 87376465 5 + TSS region transcription start site region 29804
Tssr33940 3 87377806 to 87377821 15 - TSS region transcription start site region 33940
Tssr29805 3 87377956 to 87377960 4 + TSS region transcription start site region 29805
Tssr29806 3 87408437 to 87408446 9 + TSS region transcription start site region 29806
Gm40084 3 87411410 to 87414787 3377 + lncRNA gene predicted gene, 40084
Tssr29807 3 87435764 to 87435787 23 + TSS region transcription start site region 29807
Fcrl5 3 87435777 to 87500678 64901 + protein coding gene Fc receptor-like 5
Tssr29808 3 87435798 to 87435819 21 + TSS region transcription start site region 29808
Tssr29809 3 87435820 to 87435829 9 + TSS region transcription start site region 29809
Sle18 3 125522587 to 87301597 -38220990 QTL systematic lupus erythematosus susceptibility 18