Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:8670602-9865333

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107 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr28332 3 8671343 to 8671345 2 + TSS region transcription start site region 28332
Gm38007 3 8673410 to 8673722 312 + pseudogene predicted gene, 38007
Gm23670 3 8679359 to 8679477 118 - snoRNA gene predicted gene, 23670
Gm32561 3 8679438 to 8693098 13660 - lncRNA gene predicted gene, 32561
Tssr32557 3 8692879 to 8692909 30 - TSS region transcription start site region 32557
Cpgi12963 3 8717532 to 8717724 192 CpG island CpG island 12963
D3Mit264 3 8721265 to 8721372 107 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 264
Skmw1 3 8721265 to 8721372 107 QTL skeletal muscle weight 1
C230057A21Rik 3 8732870 to 8736360 3490 - lincRNA gene RIKEN cDNA C230057A21 gene
Tssr28333 3 8743642 to 8743692 50 + TSS region transcription start site region 28333
1700042O13Rik 3 8743676 to 8746823 3147 lncRNA gene RIKEN cDNA 1700042O13 gene
Gm37647 3 8743682 to 8746824 3142 - unclassified gene predicted gene, 37647
Tssr28334 3 8746960 to 8746989 29 + TSS region transcription start site region 28334
Cpgi12964 3 8766717 to 8767846 1129 CpG island CpG island 12964
Tssr28335 3 8767140 to 8767152 12 + TSS region transcription start site region 28335
Cpgi12965 3 8785773 to 8786060 287 CpG island CpG island 12965
Mrps28 3 8802146 to 8923857 121711 - protein coding gene mitochondrial ribosomal protein S28
Cpgi12966 3 8805741 to 8806051 310 CpG island CpG island 12966
Tssr32558 3 8829696 to 8829707 11 - TSS region transcription start site region 32558
Tssr32559 3 8829714 to 8829731 17 - TSS region transcription start site region 32559
Tssr32560 3 8863270 to 8863302 32 - TSS region transcription start site region 32560
Gm41995 3 8866119 to 8881665 15546 + lncRNA gene predicted gene, 41995
Tssr28336 3 8881143 to 8881152 9 + TSS region transcription start site region 28336
Gm15467 3 8881199 to 8881643 444 + pseudogene predicted gene 15467
Gm15466 3 8882238 to 8882570 332 - pseudogene predicted gene 15466
Tssr32561 3 8882741 to 8882744 3 - TSS region transcription start site region 32561
Tssr32562 3 8913985 to 8913990 5 - TSS region transcription start site region 32562
Cpgi12967 3 8923182 to 8924095 913 CpG island CpG island 12967
Tssr28337 3 8923550 to 8923569 19 + TSS region transcription start site region 28337
Tssr32563 3 8923796 to 8923822 26 - TSS region transcription start site region 32563
Tssr28338 3 8923897 to 8923912 15 + TSS region transcription start site region 28338
9130403I23Rik 3 8925589 to 8928268 2679 unclassified gene RIKEN cDNA 9130403I23 gene
Tpd52 3 8929431 to 9004771 75340 - protein coding gene tumor protein D52
Tssr32564 3 8936370 to 8936374 4 - TSS region transcription start site region 32564
Tssr32565 3 8937981 to 8937985 4 - TSS region transcription start site region 32565
Cpgi12968 3 8963994 to 8964252 258 CpG island CpG island 12968
Tssr32566 3 8964037 to 8964101 64 - TSS region transcription start site region 32566
Tssr32567 3 8964222 to 8964240 18 - TSS region transcription start site region 32567
Tssr32568 3 8964367 to 8964401 34 - TSS region transcription start site region 32568
Tssr32569 3 9001396 to 9001399 3 - TSS region transcription start site region 32569
Tssr32570 3 9003831 to 9003856 25 - TSS region transcription start site region 32570
Cpgi12969 3 9003898 to 9004871 973 CpG island CpG island 12969
Tssr32571 3 9004422 to 9004428 6 - TSS region transcription start site region 32571
Tssr32572 3 9004454 to 9004467 13 - TSS region transcription start site region 32572
Tssr32573 3 9004472 to 9004515 43 - TSS region transcription start site region 32573
Tssr32574 3 9004624 to 9004635 11 - TSS region transcription start site region 32574
Tssr32575 3 9004686 to 9004750 64 - TSS region transcription start site region 32575
Tssr32576 3 9004760 to 9004771 11 - TSS region transcription start site region 32576
Gm46832 3 9027570 to 9029901 2331 + lncRNA gene predicted gene, 46832
Tssr28339 3 9028360 to 9028371 11 + TSS region transcription start site region 28339
Tssr28340 3 9034090 to 9034117 27 + TSS region transcription start site region 28340
Gm37616 3 9047171 to 9047492 321 - pseudogene predicted gene, 37616
4930539M17Rik 3 9061964 to 9071074 9110 + lincRNA gene RIKEN cDNA 4930539M17 gene
Gm8860 3 9072767 to 9073211 444 + pseudogene predicted gene 8860
Gm41996 3 9157271 to 9174711 17440 - lncRNA gene predicted gene, 41996
Gm33018 3 9177692 to 9182437 4745 - lncRNA gene predicted gene, 33018
Cpgi12970 3 9249735 to 9252217 2482 CpG island CpG island 12970
Tssr28341 3 9250012 to 9250024 12 + TSS region transcription start site region 28341
Tssr28342 3 9250036 to 9250047 11 + TSS region transcription start site region 28342
Zbtb10 3 9250602 to 9285333 34731 + protein coding gene zinc finger and BTB domain containing 10
D3Mit166 3 9266659 to 9266796 137 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 166
Gm41997 3 9302688 to 9343835 41147 - lncRNA gene predicted gene, 41997
D3Mit177 3 9324088 to 9324228 140 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 177
Cpgi12971 3 9334234 to 9334513 279 CpG island CpG island 12971
Cpgi12972 3 9346848 to 9347257 409 CpG island CpG island 12972
Cpgi12973 3 9365252 to 9365557 305 CpG island CpG island 12973
Gm22604 3 9402175 to 9402485 310 + unclassified non-coding RNA gene predicted gene, 22604
Tssr28343 3 9402994 to 9403027 33 + TSS region transcription start site region 28343
Tssr28344 3 9403049 to 9403092 43 + TSS region transcription start site region 28344
C030034L19Rik 3 9403078 to 9413903 10825 + lincRNA gene RIKEN cDNA C030034L19 gene
Tssr28345 3 9403111 to 9403130 19 + TSS region transcription start site region 28345
Zfp704 3 9427020 to 9610085 183065 - protein coding gene zinc finger protein 704
Tssr32577 3 9443912 to 9443914 2 - TSS region transcription start site region 32577
Gm38001 3 9496168 to 9499928 3760 + unclassified gene predicted gene, 38001
Cpgi12974 3 9608594 to 9610516 1922 CpG island CpG island 12974
Tssr28346 3 9608803 to 9608824 21 + TSS region transcription start site region 28346
Tssr28347 3 9608826 to 9608841 15 + TSS region transcription start site region 28347
Tssr32578 3 9610033 to 9610040 7 - TSS region transcription start site region 32578
Tssr32579 3 9610074 to 9610086 12 - TSS region transcription start site region 32579
Tssr32580 3 9610090 to 9610124 34 - TSS region transcription start site region 32580
Tssr32581 3 9610233 to 9610247 14 - TSS region transcription start site region 32581
Tssr32582 3 9623519 to 9623528 9 - TSS region transcription start site region 32582
Cpgi12975 3 9629957 to 9630108 151 CpG island CpG island 12975
Gm33169 3 9646323 to 9663118 16795 - lncRNA gene predicted gene, 33169
Gm17806 3 9656520 to 9656902 382 + pseudogene predicted gene, 17806
Tssr28348 3 9658352 to 9658359 7 + TSS region transcription start site region 28348
Tssr28349 3 9658371 to 9658378 7 + TSS region transcription start site region 28349
D3Mit202 3 9669772 to 9669910 138 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 202
Pag1 3 9687479 to 9833679 146200 - protein coding gene phosphoprotein associated with glycosphingolipid microdomains 1
Tssr32583 3 9705000 to 9705004 4 - TSS region transcription start site region 32583
Gm16337 3 9757607 to 9786142 28535 + lincRNA gene predicted gene 16337
Tssr32584 3 9761153 to 9761156 3 - TSS region transcription start site region 32584
Tssr32585 3 9778793 to 9778804 11 - TSS region transcription start site region 32585
Tssr32586 3 9786518 to 9786526 8 - TSS region transcription start site region 32586
Tssr32587 3 9799352 to 9799376 24 - TSS region transcription start site region 32587
Tssr32588 3 9801594 to 9801597 3 - TSS region transcription start site region 32588
Tssr815 3 9801763 to 9801797 34 - TSS region transcription start site region 815
Tssr28350 3 9801887 to 9801931 44 + TSS region transcription start site region 28350
Gm24786 3 9829620 to 9829728 108 - rRNA gene predicted gene, 24786
Cpgi12976 3 9832798 to 9834242 1444 CpG island CpG island 12976
Tssr32589 3 9833596 to 9833611 15 - TSS region transcription start site region 32589
Tssr32590 3 9833617 to 9833638 21 - TSS region transcription start site region 32590
Tssr32591 3 9833653 to 9833668 15 - TSS region transcription start site region 32591
Tssr32592 3 9853122 to 9853134 12 - TSS region transcription start site region 32592
Tssr28351 3 9853227 to 9853238 11 + TSS region transcription start site region 28351
Tssr28352 3 9853248 to 9853282 34 + TSS region transcription start site region 28352
Tssr816 3 9853293 to 9853300 7 + TSS region transcription start site region 816