Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:86108437-86988452

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79 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sh3d19 3 85971109 to 86130526 159417 + protein coding gene SH3 domain protein D19
Rps3a1 3 86137940 to 86142668 4728 - protein coding gene ribosomal protein S3A1
Snord73a 3 86138791 to 86138858 67 - snoRNA gene small nucleolar RNA, C/D box U73A
Rnu73b 3 86140617 to 86140687 70 - snoRNA gene U73B small nuclear RNA
Cpgi13323 3 86141834 to 86143091 1257 CpG island CpG island 13323
Tssr33892 3 86142593 to 86142636 43 - TSS region transcription start site region 33892
Tssr33893 3 86142642 to 86142658 16 - TSS region transcription start site region 33893
Tssr33894 3 86142684 to 86142689 5 - TSS region transcription start site region 33894
Gm37933 3 86142757 to 86145545 2788 + lincRNA gene predicted gene, 37933
Tssr29780 3 86143068 to 86143094 26 + TSS region transcription start site region 29780
Tssr29781 3 86143131 to 86143159 28 + TSS region transcription start site region 29781
Gm37493 3 86144937 to 86145369 432 - pseudogene predicted gene, 37493
D3Mit98 3 86181501 to 86181612 111 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 98
Gm23025 3 86191416 to 86191526 110 + snRNA gene predicted gene, 23025
Cpgi13324 3 86223584 to 86225310 1726 CpG island CpG island 13324
Tssr29782 3 86224199 to 86224243 44 + TSS region transcription start site region 29782
Tssr29783 3 86224665 to 86224717 52 + TSS region transcription start site region 29783
Lrba 3 86224680 to 86782692 558012 + protein coding gene LPS-responsive beige-like anchor
Gm37288 3 86263242 to 86263575 333 - pseudogene predicted gene, 37288
Tssr29784 3 86263453 to 86263457 4 + TSS region transcription start site region 29784
9430099H24Rik 3 86267653 to 86268670 1017 unclassified gene RIKEN cDNA 9430099H24 gene
Gm26343 3 86275232 to 86275362 130 - snoRNA gene predicted gene, 26343
Tssr29785 3 86312202 to 86312210 8 + TSS region transcription start site region 29785
Gm40083 3 86352016 to 86362442 10426 - lncRNA gene predicted gene, 40083
9030218A15Rik 3 86362486 to 86363578 1092 unclassified gene RIKEN cDNA 9030218A15 gene
Tssr29786 3 86362487 to 86362488 1 + TSS region transcription start site region 29786
Gm23850 3 86364457 to 86364625 168 + snRNA gene predicted gene, 23850
Gm25039 3 86384247 to 86384353 106 + snRNA gene predicted gene, 25039
Gm31677 3 86524424 to 86558716 34292 - lncRNA gene predicted gene, 31677
Tssr29787 3 86539738 to 86539747 9 + TSS region transcription start site region 29787
Tssr29788 3 86539819 to 86539832 13 + TSS region transcription start site region 29788
Tssr29789 3 86539844 to 86539855 11 + TSS region transcription start site region 29789
Tssr29790 3 86539884 to 86539907 23 + TSS region transcription start site region 29790
Mab21l2 3 86545581 to 86548283 2702 - protein coding gene mab-21-like 2
Cpgi13325 3 86546618 to 86547863 1245 CpG island CpG island 13325
Tssr33895 3 86546643 to 86546655 12 - TSS region transcription start site region 33895
Tssr33896 3 86547021 to 86547032 11 - TSS region transcription start site region 33896
Tssr33897 3 86548052 to 86548081 29 - TSS region transcription start site region 33897
Cpgi13326 3 86548119 to 86548375 256 CpG island CpG island 13326
Tssr33898 3 86548268 to 86548290 22 - TSS region transcription start site region 33898
Tssr33899 3 86548318 to 86548328 10 - TSS region transcription start site region 33899
Tssr33900 3 86548332 to 86548338 6 - TSS region transcription start site region 33900
Tssr33901 3 86548437 to 86548452 15 - TSS region transcription start site region 33901
Tssr33902 3 86548477 to 86548484 7 - TSS region transcription start site region 33902
Tssr33903 3 86548527 to 86548543 16 - TSS region transcription start site region 33903
Tssr33904 3 86548582 to 86548598 16 - TSS region transcription start site region 33904
Tssr33905 3 86548607 to 86548620 13 - TSS region transcription start site region 33905
Tssr29791 3 86548878 to 86548883 5 + TSS region transcription start site region 29791
Tssr33906 3 86551131 to 86551140 9 - TSS region transcription start site region 33906
Tssr33907 3 86551265 to 86551283 18 - TSS region transcription start site region 33907
Tssr33908 3 86551304 to 86551316 12 - TSS region transcription start site region 33908
Tssr29792 3 86551756 to 86551783 27 + TSS region transcription start site region 29792
Ewc3 3 86661247 to 86661247 0 QTL ethanol withdrawal and consumption 3
Gm3788 3 86672033 to 86672168 135 - pseudogene predicted gene 3788
Gm37876 3 86768071 to 86778653 10582 - antisense lncRNA gene predicted gene, 37876
Tssr29793 3 86783717 to 86783723 6 + TSS region transcription start site region 29793
Dclk2 3 86786151 to 86920852 134701 - protein coding gene doublecortin-like kinase 2
Tssr33909 3 86799145 to 86799177 32 - TSS region transcription start site region 33909
Tssr33910 3 86799180 to 86799194 14 - TSS region transcription start site region 33910
Gm46810 3 86825654 to 86827101 1447 - lncRNA gene predicted gene, 46810
D3Ertd731e 3 86845081 to 86845285 204 DNA segment DNA segment, Chr 3, ERATO Doi 731, expressed
Tssr29794 3 86845832 to 86845849 17 + TSS region transcription start site region 29794
Tssr29795 3 86863214 to 86863221 7 + TSS region transcription start site region 29795
Gm37025 3 86864492 to 86865320 828 + pseudogene predicted gene, 37025
Tssr33911 3 86899433 to 86899438 5 - TSS region transcription start site region 33911
Tssr33912 3 86902005 to 86902016 11 - TSS region transcription start site region 33912
Cpgi13327 3 86915290 to 86915537 247 CpG island CpG island 13327
Cpgi13328 3 86919523 to 86921109 1586 CpG island CpG island 13328
Tssr33913 3 86920333 to 86920348 15 - TSS region transcription start site region 33913
Tssr33914 3 86920363 to 86920390 27 - TSS region transcription start site region 33914
Tssr33915 3 86920395 to 86920413 18 - TSS region transcription start site region 33915
Tssr33916 3 86920488 to 86920535 47 - TSS region transcription start site region 33916
Tssr33917 3 86920543 to 86920565 22 - TSS region transcription start site region 33917
Tssr33918 3 86920830 to 86920977 147 - TSS region transcription start site region 33918
Cpgi13329 3 86921433 to 86921602 169 CpG island CpG island 13329
Gm23376 3 86930743 to 86930902 159 + snRNA gene predicted gene, 23376
Gm37207 3 86933368 to 86933663 295 - pseudogene predicted gene, 37207
Tssr29796 3 86986562 to 86986584 22 + TSS region transcription start site region 29796
Cd1d2 3 86986586 to 86989533 2947 + polymorphic pseudogene CD1d2 antigen