Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:85457536-90827545

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1386 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm37240 3 84496426 to 85887518 1391092 - protein coding gene predicted gene, 37240
Gm31419 3 85427272 to 85491799 64527 - lncRNA gene predicted gene, 31419
Gm45790 3 85435187 to 85466128 30941 - lincRNA gene predicted gene 45790
Mir466k 3 85467377 to 85467498 121 + miRNA gene microRNA 466k
Gm3740 3 85529890 to 85573993 44103 - unclassified gene predicted gene 3740
Tssr33881 3 85533262 to 85533283 21 - TSS region transcription start site region 33881
Gm42812 3 85544316 to 85553389 9073 - lincRNA gene predicted gene 42812
Gm15535 3 85556046 to 85573945 17899 - sense intronic lncRNA gene predicted gene 15535
Cpgi13320 3 85573924 to 85574392 468 CpG island CpG island 13320
Tssr29764 3 85574109 to 85574148 39 + TSS region transcription start site region 29764
Gatb 3 85574119 to 85655622 81503 + protein coding gene glutamyl-tRNA(Gln) amidotransferase, subunit B
Gm46809 3 85577513 to 85589826 12313 + lncRNA gene predicted gene, 46809
Tssr29765 3 85581133 to 85581148 15 + TSS region transcription start site region 29765
Tssr29766 3 85608323 to 85608336 13 + TSS region transcription start site region 29766
Fam160a1 3 85660063 to 85785302 125239 - protein coding gene family with sequence similarity 160, member A1
Tssr29767 3 85712319 to 85712320 1 + TSS region transcription start site region 29767
Gm40082 3 85712729 to 85717762 5033 + lncRNA gene predicted gene, 40082
Tssr33882 3 85778122 to 85778126 4 - TSS region transcription start site region 33882
Gm19068 3 85785233 to 85786000 767 + pseudogene predicted gene, 19068
D3Mit211 3 85826313 to 85826408 95 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 211
Glt28d2 3 85869849 to 85887516 17667 - protein coding gene glycosyltransferase 28 domain containing 2
Tssr923 3 85879035 to 85879038 3 + TSS region transcription start site region 923
Cpgi13321 3 85886937 to 85888029 1092 CpG island CpG island 13321
Tssr33883 3 85887305 to 85887316 11 - TSS region transcription start site region 33883
Tssr33884 3 85887342 to 85887355 13 - TSS region transcription start site region 33884
Tssr33885 3 85887361 to 85887374 13 - TSS region transcription start site region 33885
Tssr33886 3 85887387 to 85887412 25 - TSS region transcription start site region 33886
Tssr33887 3 85887413 to 85887456 43 - TSS region transcription start site region 33887
Tssr33888 3 85887472 to 85887499 27 - TSS region transcription start site region 33888
4933425M03Rik 3 85887691 to 85889234 1543 + unclassified gene RIKEN cDNA 4933425M03 gene
Tssr924 3 85887812 to 85887825 13 + TSS region transcription start site region 924
Tssr33889 3 85894909 to 85894917 8 - TSS region transcription start site region 33889
Gm26204 3 85908353 to 85908459 106 - snRNA gene predicted gene, 26204
Tssr29768 3 85914603 to 85914604 1 + TSS region transcription start site region 29768
Gm38030 3 85914643 to 85915117 474 + pseudogene predicted gene, 38030
Tssr29769 3 85915703 to 85915735 32 + TSS region transcription start site region 29769
Gm9790 3 85915783 to 85916070 287 + pseudogene predicted gene 9790
Gm25876 3 85950888 to 85951006 118 + snoRNA gene predicted gene, 25876
Gm24501 3 85962771 to 85962832 61 - snRNA gene predicted gene, 24501
Gm27811 3 85962847 to 85962910 63 - snRNA gene predicted gene, 27811
Cpgi13322 3 85970785 to 85971908 1123 CpG island CpG island 13322
Tssr29770 3 85971070 to 85971175 105 + TSS region transcription start site region 29770
Sh3d19 3 85971109 to 86130526 159417 + protein coding gene SH3 domain protein D19
Tssr29771 3 85971221 to 85971236 15 + TSS region transcription start site region 29771
Prss48 3 85993810 to 86002491 8681 - protein coding gene protease, serine 48
Tssr29772 3 85998867 to 85998871 4 + TSS region transcription start site region 29772
Tssr33890 3 86002495 to 86002507 12 - TSS region transcription start site region 33890
Tssr33891 3 86002515 to 86002535 20 - TSS region transcription start site region 33891
Tssr29773 3 86011590 to 86011614 24 + TSS region transcription start site region 29773
Tssr29774 3 86017231 to 86017245 14 + TSS region transcription start site region 29774
Tssr29775 3 86038837 to 86038891 54 + TSS region transcription start site region 29775
Tssr29776 3 86040531 to 86040571 40 + TSS region transcription start site region 29776
Tssr29777 3 86040805 to 86040825 20 + TSS region transcription start site region 29777
Elads2 3 86083297 to 86083297 0 QTL ENU induced lung adenoma susceptibility 2
Gm25188 3 86100534 to 86100655 121 + snoRNA gene predicted gene, 25188
Tssr29778 3 86104024 to 86104063 39 + TSS region transcription start site region 29778
Tssr29779 3 86104199 to 86104217 18 + TSS region transcription start site region 29779
Rps3a1 3 86137940 to 86142668 4728 - protein coding gene ribosomal protein S3A1
Snord73a 3 86138791 to 86138858 67 - snoRNA gene small nucleolar RNA, C/D box U73A
Rnu73b 3 86140617 to 86140687 70 - snoRNA gene U73B small nuclear RNA
Cpgi13323 3 86141834 to 86143091 1257 CpG island CpG island 13323
Tssr33892 3 86142593 to 86142636 43 - TSS region transcription start site region 33892
Tssr33893 3 86142642 to 86142658 16 - TSS region transcription start site region 33893
Tssr33894 3 86142684 to 86142689 5 - TSS region transcription start site region 33894
Gm37933 3 86142757 to 86145545 2788 + lincRNA gene predicted gene, 37933
Tssr29780 3 86143068 to 86143094 26 + TSS region transcription start site region 29780
Tssr29781 3 86143131 to 86143159 28 + TSS region transcription start site region 29781
Gm37493 3 86144937 to 86145369 432 - pseudogene predicted gene, 37493
D3Mit98 3 86181501 to 86181612 111 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 98
Gm23025 3 86191416 to 86191526 110 + snRNA gene predicted gene, 23025
Cpgi13324 3 86223584 to 86225310 1726 CpG island CpG island 13324
Tssr29782 3 86224199 to 86224243 44 + TSS region transcription start site region 29782
Tssr29783 3 86224665 to 86224717 52 + TSS region transcription start site region 29783
Lrba 3 86224680 to 86782692 558012 + protein coding gene LPS-responsive beige-like anchor
Gm37288 3 86263242 to 86263575 333 - pseudogene predicted gene, 37288
Tssr29784 3 86263453 to 86263457 4 + TSS region transcription start site region 29784
9430099H24Rik 3 86267653 to 86268670 1017 unclassified gene RIKEN cDNA 9430099H24 gene
Gm26343 3 86275232 to 86275362 130 - snoRNA gene predicted gene, 26343
Tssr29785 3 86312202 to 86312210 8 + TSS region transcription start site region 29785
Gm40083 3 86352016 to 86362442 10426 - lncRNA gene predicted gene, 40083
9030218A15Rik 3 86362486 to 86363578 1092 unclassified gene RIKEN cDNA 9030218A15 gene
Tssr29786 3 86362487 to 86362488 1 + TSS region transcription start site region 29786
Gm23850 3 86364457 to 86364625 168 + snRNA gene predicted gene, 23850
Gm25039 3 86384247 to 86384353 106 + snRNA gene predicted gene, 25039
Gm31677 3 86524424 to 86558716 34292 - lncRNA gene predicted gene, 31677
Tssr29787 3 86539738 to 86539747 9 + TSS region transcription start site region 29787
Tssr29788 3 86539819 to 86539832 13 + TSS region transcription start site region 29788
Tssr29789 3 86539844 to 86539855 11 + TSS region transcription start site region 29789
Tssr29790 3 86539884 to 86539907 23 + TSS region transcription start site region 29790
Mab21l2 3 86545581 to 86548283 2702 - protein coding gene mab-21-like 2
Cpgi13325 3 86546618 to 86547863 1245 CpG island CpG island 13325
Tssr33895 3 86546643 to 86546655 12 - TSS region transcription start site region 33895
Tssr33896 3 86547021 to 86547032 11 - TSS region transcription start site region 33896
Tssr33897 3 86548052 to 86548081 29 - TSS region transcription start site region 33897
Cpgi13326 3 86548119 to 86548375 256 CpG island CpG island 13326
Tssr33898 3 86548268 to 86548290 22 - TSS region transcription start site region 33898
Tssr33899 3 86548318 to 86548328 10 - TSS region transcription start site region 33899
Tssr33900 3 86548332 to 86548338 6 - TSS region transcription start site region 33900
Tssr33901 3 86548437 to 86548452 15 - TSS region transcription start site region 33901
Tssr33902 3 86548477 to 86548484 7 - TSS region transcription start site region 33902
Tssr33903 3 86548527 to 86548543 16 - TSS region transcription start site region 33903
Tssr33904 3 86548582 to 86548598 16 - TSS region transcription start site region 33904
Tssr33905 3 86548607 to 86548620 13 - TSS region transcription start site region 33905
Tssr29791 3 86548878 to 86548883 5 + TSS region transcription start site region 29791
Tssr33906 3 86551131 to 86551140 9 - TSS region transcription start site region 33906
Tssr33907 3 86551265 to 86551283 18 - TSS region transcription start site region 33907
Tssr33908 3 86551304 to 86551316 12 - TSS region transcription start site region 33908
Tssr29792 3 86551756 to 86551783 27 + TSS region transcription start site region 29792
Ewc3 3 86661247 to 86661247 0 QTL ethanol withdrawal and consumption 3
Gm3788 3 86672033 to 86672168 135 - pseudogene predicted gene 3788
Gm37876 3 86768071 to 86778653 10582 - antisense lncRNA gene predicted gene, 37876
Tssr29793 3 86783717 to 86783723 6 + TSS region transcription start site region 29793
Dclk2 3 86786151 to 86920852 134701 - protein coding gene doublecortin-like kinase 2
Tssr33909 3 86799145 to 86799177 32 - TSS region transcription start site region 33909
Tssr33910 3 86799180 to 86799194 14 - TSS region transcription start site region 33910
Gm46810 3 86825654 to 86827101 1447 - lncRNA gene predicted gene, 46810
D3Ertd731e 3 86845081 to 86845285 204 DNA segment DNA segment, Chr 3, ERATO Doi 731, expressed
Tssr29794 3 86845832 to 86845849 17 + TSS region transcription start site region 29794
Tssr29795 3 86863214 to 86863221 7 + TSS region transcription start site region 29795
Gm37025 3 86864492 to 86865320 828 + pseudogene predicted gene, 37025
Tssr33911 3 86899433 to 86899438 5 - TSS region transcription start site region 33911
Tssr33912 3 86902005 to 86902016 11 - TSS region transcription start site region 33912
Cpgi13327 3 86915290 to 86915537 247 CpG island CpG island 13327
Cpgi13328 3 86919523 to 86921109 1586 CpG island CpG island 13328
Tssr33913 3 86920333 to 86920348 15 - TSS region transcription start site region 33913
Tssr33914 3 86920363 to 86920390 27 - TSS region transcription start site region 33914
Tssr33915 3 86920395 to 86920413 18 - TSS region transcription start site region 33915
Tssr33916 3 86920488 to 86920535 47 - TSS region transcription start site region 33916
Tssr33917 3 86920543 to 86920565 22 - TSS region transcription start site region 33917
Tssr33918 3 86920830 to 86920977 147 - TSS region transcription start site region 33918
Cpgi13329 3 86921433 to 86921602 169 CpG island CpG island 13329
Gm23376 3 86930743 to 86930902 159 + snRNA gene predicted gene, 23376
Gm37207 3 86933368 to 86933663 295 - pseudogene predicted gene, 37207
Tssr29796 3 86986562 to 86986584 22 + TSS region transcription start site region 29796
Cd1d2 3 86986586 to 86989533 2947 + polymorphic pseudogene CD1d2 antigen
Cd1d1 3 86995834 to 86999340 3506 - protein coding gene CD1d1 antigen
Tssr33919 3 86998997 to 86999033 36 - TSS region transcription start site region 33919
Tssr33920 3 86999264 to 86999275 11 - TSS region transcription start site region 33920
Tssr33921 3 86999284 to 86999334 50 - TSS region transcription start site region 33921
Tssr33922 3 86999347 to 86999372 25 - TSS region transcription start site region 33922
Tssr33923 3 87012244 to 87012253 9 - TSS region transcription start site region 33923
Gm8869 3 87022937 to 87023883 946 - pseudogene predicted gene 8869
Gm18403 3 87054359 to 87054887 528 + pseudogene predicted gene, 18403
Gm37575 3 87060125 to 87060433 308 + pseudogene predicted gene, 37575
Gm24472 3 87066893 to 87067024 131 + snoRNA gene predicted gene, 24472
Kirrel 3 87078593 to 87174747 96154 - protein coding gene kirre like nephrin family adhesion molecule 1
Tssr33924 3 87112271 to 87112274 3 - TSS region transcription start site region 33924
Tssr33925 3 87112436 to 87112445 9 - TSS region transcription start site region 33925
Tssr33926 3 87112463 to 87112469 6 - TSS region transcription start site region 33926
D3Mit155 3 87126643 to 87126775 132 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 155
D3Mit155.1 3 87126737 to 87126846 109 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 155.1
Gm37855 3 87157693 to 87162455 4762 + lincRNA gene predicted gene, 37855
Cpgi13330 3 87174209 to 87175037 828 CpG island CpG island 13330
Tssr33927 3 87174458 to 87174485 27 - TSS region transcription start site region 33927
Tssr33928 3 87174518 to 87174578 60 - TSS region transcription start site region 33928
Tssr33929 3 87174632 to 87174655 23 - TSS region transcription start site region 33929
Tssr33930 3 87174657 to 87174679 22 - TSS region transcription start site region 33930
Gm10705 3 87207545 to 87208005 460 - pseudogene predicted gene 10705
Tssr33931 3 87208008 to 87208033 25 - TSS region transcription start site region 33931
Cpgi13331 3 87214255 to 87214544 289 CpG island CpG island 13331
Tssr33932 3 87249659 to 87249673 14 - TSS region transcription start site region 33932
Fcrls 3 87250758 to 87263738 12980 - protein coding gene Fc receptor-like S, scavenger receptor
Tssr33933 3 87254340 to 87254345 5 - TSS region transcription start site region 33933
Cia5a 3 87263147 to 89232787 1969640 QTL collagen induced arthritis QTL 5a
D3Mit187 3 87263147 to 87263268 121 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 187
hsh 3 87263147 to 90359778 3096631 heritable phenotypic marker hind shaker
D3Dcr12 3 87263153 to 87263268 115 DNA segment DNA Segment, Chr 3, Derry C. Roopenian 12
Tssr33934 3 87263518 to 87263591 73 - TSS region transcription start site region 33934
Tssr33935 3 87263593 to 87263594 1 - TSS region transcription start site region 33935
Tssr33936 3 87263596 to 87263607 11 - TSS region transcription start site region 33936
Tssr33937 3 87263654 to 87263662 8 - TSS region transcription start site region 33937
Tssr33938 3 87263703 to 87263714 11 - TSS region transcription start site region 33938
Tssr29797 3 87290332 to 87290359 27 + TSS region transcription start site region 29797
Gm31879 3 87290337 to 87300907 10570 + lncRNA gene predicted gene, 31879
Sle11 3 87301597 to 87301735 138 QTL systematic lupus erythematosus susceptibility 11
D3Mit40 3 87301597 to 87301735 138 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 40
D3Dcr13 3 87301627 to 87301729 102 DNA segment DNA Segment, Chr 3, Derry C. Roopenian 13
Tssr33939 3 87330856 to 87330866 10 - TSS region transcription start site region 33939
Gm31940 3 87353997 to 87377600 23603 - lncRNA gene predicted gene, 31940
Tssr29798 3 87357874 to 87357890 16 + TSS region transcription start site region 29798
Cd5l 3 87357881 to 87371073 13192 + protein coding gene CD5 antigen-like
Tssr29799 3 87357903 to 87357942 39 + TSS region transcription start site region 29799
Tssr29800 3 87357963 to 87357981 18 + TSS region transcription start site region 29800
Tssr29801 3 87376381 to 87376393 12 + TSS region transcription start site region 29801
Fcrl1 3 87376387 to 87402934 26547 + protein coding gene Fc receptor-like 1
Tssr29802 3 87376396 to 87376410 14 + TSS region transcription start site region 29802
Tssr29803 3 87376441 to 87376459 18 + TSS region transcription start site region 29803
Tssr29804 3 87376460 to 87376465 5 + TSS region transcription start site region 29804
Tssr33940 3 87377806 to 87377821 15 - TSS region transcription start site region 33940
Tssr29805 3 87377956 to 87377960 4 + TSS region transcription start site region 29805
Tssr29806 3 87408437 to 87408446 9 + TSS region transcription start site region 29806
Gm40084 3 87411410 to 87414787 3377 + lncRNA gene predicted gene, 40084
Tssr29807 3 87435764 to 87435787 23 + TSS region transcription start site region 29807
Fcrl5 3 87435777 to 87500678 64901 + protein coding gene Fc receptor-like 5
Tssr29808 3 87435798 to 87435819 21 + TSS region transcription start site region 29808
Tssr29809 3 87435820 to 87435829 9 + TSS region transcription start site region 29809
Gm40085 3 87487021 to 87512192 25171 - lncRNA gene predicted gene, 40085
Tssr925 3 87487392 to 87487396 4 + TSS region transcription start site region 925
Gm31998 3 87508525 to 87513181 4656 + lncRNA gene predicted gene, 31998
Tssr33941 3 87512576 to 87512585 9 - TSS region transcription start site region 33941