Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:84253547-84933563

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75 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Trim2 3 84160439 to 84305841 145402 - protein coding gene tripartite motif-containing 2
Cpgi13307 3 84259141 to 84260022 881 CpG island CpG island 13307
Tssr33853 3 84259555 to 84259571 16 - TSS region transcription start site region 33853
Tssr33854 3 84259584 to 84259596 12 - TSS region transcription start site region 33854
Tssr33855 3 84259616 to 84259633 17 - TSS region transcription start site region 33855
Tssr33856 3 84259658 to 84259699 41 - TSS region transcription start site region 33856
Tssr33857 3 84259700 to 84259728 28 - TSS region transcription start site region 33857
Tssr33858 3 84259736 to 84259787 51 - TSS region transcription start site region 33858
Tssr33859 3 84259836 to 84259847 11 - TSS region transcription start site region 33859
Tssr33860 3 84259918 to 84259937 19 - TSS region transcription start site region 33860
Tssr33861 3 84270704 to 84270713 9 - TSS region transcription start site region 33861
Tssr33862 3 84270718 to 84270735 17 - TSS region transcription start site region 33862
Tssr33863 3 84270742 to 84270775 33 - TSS region transcription start site region 33863
Tssr33864 3 84270782 to 84270794 12 - TSS region transcription start site region 33864
Cpgi13308 3 84304299 to 84305586 1287 CpG island CpG island 13308
Tssr33865 3 84304647 to 84304660 13 - TSS region transcription start site region 33865
Tssr33866 3 84304678 to 84304692 14 - TSS region transcription start site region 33866
Tssr33867 3 84304733 to 84304753 20 - TSS region transcription start site region 33867
Tssr33868 3 84304762 to 84304782 20 - TSS region transcription start site region 33868
Tssr33869 3 84305385 to 84305456 71 - TSS region transcription start site region 33869
Cpgi13309 3 84334732 to 84335084 352 CpG island CpG island 13309
Tssr29732 3 84335559 to 84335574 15 + TSS region transcription start site region 29732
Cpgi13310 3 84345148 to 84345361 213 CpG island CpG island 13310
4930565D16Rik 3 84349376 to 84379921 30545 - lincRNA gene RIKEN cDNA 4930565D16 gene
Fhdc1 3 84442198 to 84480429 38231 - protein coding gene FH2 domain containing 1
Cpgi13311 3 84444710 to 84445278 568 CpG island CpG island 13311
Tssr33870 3 84450770 to 84450771 1 - TSS region transcription start site region 33870
Tssr29733 3 84473927 to 84473943 16 + TSS region transcription start site region 29733
Cpgi13312 3 84479078 to 84481042 1964 CpG island CpG island 13312
Tssr33871 3 84479418 to 84479476 58 - TSS region transcription start site region 33871
Tssr29734 3 84479515 to 84479547 32 + TSS region transcription start site region 29734
Tssr29735 3 84480271 to 84480298 27 + TSS region transcription start site region 29735
Tssr33872 3 84480419 to 84480456 37 - TSS region transcription start site region 33872
Tssr33873 3 84480461 to 84480470 9 - TSS region transcription start site region 33873
Tssr29736 3 84480539 to 84480568 29 + TSS region transcription start site region 29736
Arfip1 3 84496093 to 84582625 86532 - protein coding gene ADP-ribosylation factor interacting protein 1
Gm37240 3 84496426 to 85887518 1391092 - protein coding gene predicted gene, 37240
Gm8813 3 84552858 to 84553452 594 - pseudogene predicted gene 8813
Gm38241 3 84556890 to 84557787 897 - pseudogene predicted gene, 38241
Cpgi13313 3 84582025 to 84583361 1336 CpG island CpG island 13313
Tssr33874 3 84582476 to 84582522 46 - TSS region transcription start site region 33874
Tssr33875 3 84582616 to 84582699 83 - TSS region transcription start site region 33875
Tssr33876 3 84582743 to 84582754 11 - TSS region transcription start site region 33876
Tssr29737 3 84593547 to 84593563 16 + TSS region transcription start site region 29737
Tigd4 3 84593574 to 84597032 3458 + protein coding gene tigger transposable element derived 4
Cpgi13314 3 84595045 to 84595330 285 CpG island CpG island 13314
Gm46836 3 84604056 to 84616170 12114 + lncRNA gene predicted gene, 46836
Tssr33877 3 84641482 to 84641486 4 - TSS region transcription start site region 33877
Cpgi13315 3 84666152 to 84666487 335 CpG island CpG island 13315
Tmem154 3 84666192 to 84704575 38383 + protein coding gene transmembrane protein 154
Tssr29738 3 84666229 to 84666288 59 + TSS region transcription start site region 29738
Tssr29739 3 84666304 to 84666354 50 + TSS region transcription start site region 29739
Cpgi13316 3 84732251 to 84732447 196 CpG island CpG island 13316
D3Mit139 3 84736136 to 84736220 84 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 139
Gm40079 3 84744975 to 84792206 47231 + lncRNA gene predicted gene, 40079
D3Mit340 3 84798887 to 84798999 112 DNA segment DNA Segment, Chr 3 Massachusetts Institute of Technology 340
Cpgi13317 3 84813868 to 84815905 2037 CpG island CpG island 13317
Tssr29740 3 84814583 to 84814658 75 + TSS region transcription start site region 29740
Fbxw7 3 84815268 to 84979198 163930 + protein coding gene F-box and WD-40 domain protein 7
Tssr29741 3 84817306 to 84817312 6 + TSS region transcription start site region 29741
Tssr29742 3 84829786 to 84829790 4 + TSS region transcription start site region 29742
Gm40080 3 84841973 to 84884842 42869 - lncRNA gene predicted gene, 40080
Tssr29743 3 84843226 to 84843236 10 + TSS region transcription start site region 29743
Tssr29744 3 84858821 to 84858826 5 + TSS region transcription start site region 29744
Tssr29745 3 84869478 to 84869485 7 + TSS region transcription start site region 29745
Gm37726 3 84873891 to 84877776 3885 + unclassified gene predicted gene, 37726
Tssr33878 3 84875518 to 84875529 11 - TSS region transcription start site region 33878
Tssr29746 3 84905896 to 84905908 12 + TSS region transcription start site region 29746
Tssr29747 3 84912471 to 84912483 12 + TSS region transcription start site region 29747
Tssr29748 3 84912553 to 84912572 19 + TSS region transcription start site region 29748
Gm46808 3 84912897 to 84913430 533 - pseudogene predicted gene, 46808
Tssr33879 3 84913557 to 84913565 8 - TSS region transcription start site region 33879
Tssr29749 3 84918267 to 84918273 6 + TSS region transcription start site region 29749
Tssr29750 3 84925455 to 84925472 17 + TSS region transcription start site region 29750
Tssr29751 3 84925476 to 84925488 12 + TSS region transcription start site region 29751