Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:83314786-86344790

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260 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
D3Mit212 3 83317410 to 83317530 120 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 212
Dchs2 3 83353849 to 83356362 2513 + protein coding gene dachsous cadherin related 2
Gm38096 3 83403402 to 83405790 2388 + lincRNA gene predicted gene, 38096
1700028M03Rik 3 83555367 to 83574118 18751 - lincRNA gene RIKEN cDNA 1700028M03 gene
Gm40076 3 83596327 to 83601087 4760 - lncRNA gene predicted gene, 40076
Tssr33827 3 83601536 to 83601557 21 - TSS region transcription start site region 33827
D3Mit246 3 83614974 to 83615223 249 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 246
Gm22342 3 83634577 to 83634874 297 - unclassified non-coding RNA gene predicted gene, 22342
Tssr29717 3 83686675 to 83686681 6 + TSS region transcription start site region 29717
Rpl28-ps2 3 83686679 to 83687154 475 + pseudogene ribosomal protein L28, pseudogene 2
Gm24584 3 83702252 to 83702358 106 + snRNA gene predicted gene, 24584
Gm30293 3 83719356 to 83727367 8011 - lncRNA gene predicted gene, 30293
Cpgi13298 3 83764066 to 83764642 576 CpG island CpG island 13298
Cpgi13299 3 83765775 to 83767096 1321 CpG island CpG island 13299
Tssr29718 3 83766173 to 83766187 14 + TSS region transcription start site region 29718
Tssr29719 3 83766300 to 83766331 31 + TSS region transcription start site region 29719
Sfrp2 3 83766321 to 83774316 7995 + protein coding gene secreted frizzled-related protein 2
Tssr29720 3 83766602 to 83766613 11 + TSS region transcription start site region 29720
Tssr29721 3 83766616 to 83766621 5 + TSS region transcription start site region 29721
Tssr29722 3 83766628 to 83766639 11 + TSS region transcription start site region 29722
Tssr29723 3 83766661 to 83766672 11 + TSS region transcription start site region 29723
Tssr29724 3 83766979 to 83766990 11 + TSS region transcription start site region 29724
Cpgi13300 3 83773134 to 83773504 370 CpG island CpG island 13300
Tssr33828 3 83773173 to 83773193 20 - TSS region transcription start site region 33828
Tssr29725 3 83773847 to 83773860 13 + TSS region transcription start site region 29725
Gm26771 3 83773853 to 83789956 16103 - antisense lncRNA gene predicted gene, 26771
Tssr33829 3 83774669 to 83774673 4 - TSS region transcription start site region 33829
Cpgi13301 3 83789517 to 83790148 631 CpG island CpG island 13301
Tssr33830 3 83789940 to 83789961 21 - TSS region transcription start site region 33830
Tssr33831 3 83789973 to 83789992 19 - TSS region transcription start site region 33831
Gm7115 3 83811471 to 83832219 20748 + pseudogene predicted gene 7115
Tlr2 3 83836272 to 83841767 5495 - protein coding gene toll-like receptor 2
Cpgi13302 3 83836508 to 83836692 184 CpG island CpG island 13302
Tssr33832 3 83836854 to 83836867 13 - TSS region transcription start site region 33832
Tssr33833 3 83841085 to 83841170 85 - TSS region transcription start site region 33833
Cpgi13303 3 83841105 to 83841751 646 CpG island CpG island 13303
Tssr918 3 83841286 to 83841332 46 - TSS region transcription start site region 918
Tssr919 3 83841546 to 83841551 5 - TSS region transcription start site region 919
Tssr33834 3 83841555 to 83841568 13 - TSS region transcription start site region 33834
Tssr33835 3 83841575 to 83841613 38 - TSS region transcription start site region 33835
Tssr920 3 83841729 to 83841760 31 - TSS region transcription start site region 920
Tssr29726 3 83845003 to 83845031 28 + TSS region transcription start site region 29726
Tssr33836 3 83859742 to 83859748 6 - TSS region transcription start site region 33836
Tssr921 3 83863026 to 83863037 11 - TSS region transcription start site region 921
Tssr33837 3 83863064 to 83863075 11 - TSS region transcription start site region 33837
Tssr29727 3 83863253 to 83863302 49 + TSS region transcription start site region 29727
Tmem131l 3 83898205 to 84040182 141977 - protein coding gene transmembrane 131 like
Tssr33838 3 83980896 to 83980901 5 - TSS region transcription start site region 33838
4930509B17Rik 3 84028437 to 84029280 843 unclassified gene RIKEN cDNA 4930509B17 gene
Cpgi13304 3 84038940 to 84040871 1931 CpG island CpG island 13304
Tssr29728 3 84039378 to 84039382 4 + TSS region transcription start site region 29728
Tssr33839 3 84039875 to 84039905 30 - TSS region transcription start site region 33839
Tssr33840 3 84040100 to 84040147 47 - TSS region transcription start site region 33840
Tssr33841 3 84040151 to 84040171 20 - TSS region transcription start site region 33841
Gm30352 3 84040221 to 84052100 11879 + lncRNA gene predicted gene, 30352
Tssr33842 3 84040256 to 84040263 7 - TSS region transcription start site region 33842
Tssr33843 3 84040276 to 84040290 14 - TSS region transcription start site region 33843
Tssr33844 3 84040292 to 84040321 29 - TSS region transcription start site region 33844
Tssr33845 3 84041981 to 84042000 19 - TSS region transcription start site region 33845
Gm36981 3 84058968 to 84063452 4484 - unclassified non-coding RNA gene predicted gene, 36981
Gm30458 3 84061741 to 84062773 1032 + lncRNA gene predicted gene, 30458
Tssr29729 3 84071998 to 84072004 6 + TSS region transcription start site region 29729
Mnd1 3 84087933 to 84155786 67853 - protein coding gene meiotic nuclear divisions 1
Cpgi13305 3 84155316 to 84155962 646 CpG island CpG island 13305
Tssr922 3 84155521 to 84155532 11 + TSS region transcription start site region 922
Tssr33846 3 84155735 to 84155754 19 - TSS region transcription start site region 33846
Tssr33847 3 84155762 to 84155796 34 - TSS region transcription start site region 33847
Trim2 3 84160439 to 84305841 145402 - protein coding gene tripartite motif-containing 2
Gm6525 3 84174638 to 84175193 555 + protein coding gene predicted pseudogene 6525
Tssr29730 3 84180588 to 84180612 24 + TSS region transcription start site region 29730
Tssr29731 3 84189985 to 84190022 37 + TSS region transcription start site region 29731
Cpgi13306 3 84190404 to 84191286 882 CpG island CpG island 13306
Tssr33848 3 84191182 to 84191193 11 - TSS region transcription start site region 33848
Tssr33849 3 84191223 to 84191236 13 - TSS region transcription start site region 33849
Tssr33850 3 84191242 to 84191315 73 - TSS region transcription start site region 33850
Tssr33851 3 84220835 to 84220846 11 - TSS region transcription start site region 33851
Tssr33852 3 84220853 to 84220896 43 - TSS region transcription start site region 33852
Gm40078 3 84228694 to 84247037 18343 + lncRNA gene predicted gene, 40078
n-TGgcc9 3 84229011 to 84229081 70 - tRNA gene nuclear encoded tRNA glycine 9 (anticodon GCC)
Cpgi13307 3 84259141 to 84260022 881 CpG island CpG island 13307
Tssr33853 3 84259555 to 84259571 16 - TSS region transcription start site region 33853
Tssr33854 3 84259584 to 84259596 12 - TSS region transcription start site region 33854
Tssr33855 3 84259616 to 84259633 17 - TSS region transcription start site region 33855
Tssr33856 3 84259658 to 84259699 41 - TSS region transcription start site region 33856
Tssr33857 3 84259700 to 84259728 28 - TSS region transcription start site region 33857
Tssr33858 3 84259736 to 84259787 51 - TSS region transcription start site region 33858
Tssr33859 3 84259836 to 84259847 11 - TSS region transcription start site region 33859
Tssr33860 3 84259918 to 84259937 19 - TSS region transcription start site region 33860
Tssr33861 3 84270704 to 84270713 9 - TSS region transcription start site region 33861
Tssr33862 3 84270718 to 84270735 17 - TSS region transcription start site region 33862
Tssr33863 3 84270742 to 84270775 33 - TSS region transcription start site region 33863
Tssr33864 3 84270782 to 84270794 12 - TSS region transcription start site region 33864
Cpgi13308 3 84304299 to 84305586 1287 CpG island CpG island 13308
Tssr33865 3 84304647 to 84304660 13 - TSS region transcription start site region 33865
Tssr33866 3 84304678 to 84304692 14 - TSS region transcription start site region 33866
Tssr33867 3 84304733 to 84304753 20 - TSS region transcription start site region 33867
Tssr33868 3 84304762 to 84304782 20 - TSS region transcription start site region 33868
Tssr33869 3 84305385 to 84305456 71 - TSS region transcription start site region 33869
Cpgi13309 3 84334732 to 84335084 352 CpG island CpG island 13309
Tssr29732 3 84335559 to 84335574 15 + TSS region transcription start site region 29732
Cpgi13310 3 84345148 to 84345361 213 CpG island CpG island 13310
4930565D16Rik 3 84349376 to 84379921 30545 - lincRNA gene RIKEN cDNA 4930565D16 gene
Fhdc1 3 84442198 to 84480429 38231 - protein coding gene FH2 domain containing 1
Cpgi13311 3 84444710 to 84445278 568 CpG island CpG island 13311
Tssr33870 3 84450770 to 84450771 1 - TSS region transcription start site region 33870
Tssr29733 3 84473927 to 84473943 16 + TSS region transcription start site region 29733
Cpgi13312 3 84479078 to 84481042 1964 CpG island CpG island 13312
Tssr33871 3 84479418 to 84479476 58 - TSS region transcription start site region 33871
Tssr29734 3 84479515 to 84479547 32 + TSS region transcription start site region 29734
Tssr29735 3 84480271 to 84480298 27 + TSS region transcription start site region 29735
Tssr33872 3 84480419 to 84480456 37 - TSS region transcription start site region 33872
Tssr33873 3 84480461 to 84480470 9 - TSS region transcription start site region 33873
Tssr29736 3 84480539 to 84480568 29 + TSS region transcription start site region 29736
Arfip1 3 84496093 to 84582625 86532 - protein coding gene ADP-ribosylation factor interacting protein 1
Gm37240 3 84496426 to 85887518 1391092 - protein coding gene predicted gene, 37240
Gm8813 3 84552858 to 84553452 594 - pseudogene predicted gene 8813
Gm38241 3 84556890 to 84557787 897 - pseudogene predicted gene, 38241
Cpgi13313 3 84582025 to 84583361 1336 CpG island CpG island 13313
Tssr33874 3 84582476 to 84582522 46 - TSS region transcription start site region 33874
Tssr33875 3 84582616 to 84582699 83 - TSS region transcription start site region 33875
Tssr33876 3 84582743 to 84582754 11 - TSS region transcription start site region 33876
Tssr29737 3 84593547 to 84593563 16 + TSS region transcription start site region 29737
Tigd4 3 84593574 to 84597032 3458 + protein coding gene tigger transposable element derived 4
Cpgi13314 3 84595045 to 84595330 285 CpG island CpG island 13314
Gm46836 3 84604056 to 84616170 12114 + lncRNA gene predicted gene, 46836
Tssr33877 3 84641482 to 84641486 4 - TSS region transcription start site region 33877
Cpgi13315 3 84666152 to 84666487 335 CpG island CpG island 13315
Tmem154 3 84666192 to 84704575 38383 + protein coding gene transmembrane protein 154
Tssr29738 3 84666229 to 84666288 59 + TSS region transcription start site region 29738
Tssr29739 3 84666304 to 84666354 50 + TSS region transcription start site region 29739
Cpgi13316 3 84732251 to 84732447 196 CpG island CpG island 13316
D3Mit139 3 84736136 to 84736220 84 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 139
Gm40079 3 84744975 to 84792206 47231 + lncRNA gene predicted gene, 40079
D3Mit340 3 84798887 to 84798999 112 DNA segment DNA Segment, Chr 3 Massachusetts Institute of Technology 340
Cpgi13317 3 84813868 to 84815905 2037 CpG island CpG island 13317
Tssr29740 3 84814583 to 84814658 75 + TSS region transcription start site region 29740
Fbxw7 3 84815268 to 84979198 163930 + protein coding gene F-box and WD-40 domain protein 7
Tssr29741 3 84817306 to 84817312 6 + TSS region transcription start site region 29741
Tssr29742 3 84829786 to 84829790 4 + TSS region transcription start site region 29742
Gm40080 3 84841973 to 84884842 42869 - lncRNA gene predicted gene, 40080
Tssr29743 3 84843226 to 84843236 10 + TSS region transcription start site region 29743
Tssr29744 3 84858821 to 84858826 5 + TSS region transcription start site region 29744
Tssr29745 3 84869478 to 84869485 7 + TSS region transcription start site region 29745
Gm37726 3 84873891 to 84877776 3885 + unclassified gene predicted gene, 37726
Tssr33878 3 84875518 to 84875529 11 - TSS region transcription start site region 33878
Tssr29746 3 84905896 to 84905908 12 + TSS region transcription start site region 29746
Tssr29747 3 84912471 to 84912483 12 + TSS region transcription start site region 29747
Tssr29748 3 84912553 to 84912572 19 + TSS region transcription start site region 29748
Gm46808 3 84912897 to 84913430 533 - pseudogene predicted gene, 46808
Tssr33879 3 84913557 to 84913565 8 - TSS region transcription start site region 33879
Tssr29749 3 84918267 to 84918273 6 + TSS region transcription start site region 29749
Tssr29750 3 84925455 to 84925472 17 + TSS region transcription start site region 29750
Tssr29751 3 84925476 to 84925488 12 + TSS region transcription start site region 29751
Tssr29752 3 84952167 to 84952186 19 + TSS region transcription start site region 29752
Tssr29753 3 84952188 to 84952200 12 + TSS region transcription start site region 29753
Tssr29754 3 84952203 to 84952230 27 + TSS region transcription start site region 29754
Tssr29755 3 84952269 to 84952291 22 + TSS region transcription start site region 29755
Tssr29756 3 84952333 to 84952409 76 + TSS region transcription start site region 29756
Tssr29757 3 84952427 to 84952435 8 + TSS region transcription start site region 29757
Tssr29758 3 84952457 to 84952474 17 + TSS region transcription start site region 29758
Tssr29759 3 84952489 to 84952500 11 + TSS region transcription start site region 29759
Tssr29760 3 84952523 to 84952538 15 + TSS region transcription start site region 29760
Fbxw7as1 3 84965056 to 84965580 524 - antisense lncRNA gene F-box and WD-40 domain protein 7 antisense transcript 1
Tssr29761 3 84977566 to 84977595 29 + TSS region transcription start site region 29761
Tssr29762 3 84977946 to 84977961 15 + TSS region transcription start site region 29762
Tssr29763 3 84978129 to 84978133 4 + TSS region transcription start site region 29763
Gm30944 3 85021687 to 85028574 6887 + lncRNA gene predicted gene, 30944
Tssr33880 3 85037954 to 85037956 2 - TSS region transcription start site region 33880
Gm30991 3 85049140 to 85107896 58756 + lncRNA gene predicted gene, 30991
Gm31096 3 85114984 to 85122505 7521 - lncRNA gene predicted gene, 31096
Gm38041 3 85152036 to 85152696 660 - pseudogene predicted gene, 38041
Cpgi13318 3 85186652 to 85186964 312 CpG island CpG island 13318
Gm38313 3 85195182 to 85196447 1265 - unclassified gene predicted gene, 38313
Cpgi13319 3 85280539 to 85280824 285 CpG island CpG island 13319
D3Mit281 3 85284759 to 85284876 117 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 281
1700036G14Rik 3 85317519 to 85332027 14508 + antisense lncRNA gene RIKEN cDNA 1700036G14 gene
Gm31210 3 85342121 to 85343407 1286 + lncRNA gene predicted gene, 31210
Gm31359 3 85391545 to 85402099 10554 - lncRNA gene predicted gene, 31359
Gm42813 3 85397524 to 85428128 30604 - lincRNA gene predicted gene 42813
D3Mit73 3 85399196 to 85399341 145 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 73
Gm31304 3 85405628 to 85410345 4717 + lncRNA gene predicted gene, 31304
Gm31419 3 85427272 to 85491799 64527 - lncRNA gene predicted gene, 31419
Gm45790 3 85435187 to 85466128 30941 - lincRNA gene predicted gene 45790
Mir466k 3 85467377 to 85467498 121 + miRNA gene microRNA 466k
Gm3740 3 85529890 to 85573993 44103 - unclassified gene predicted gene 3740
Tssr33881 3 85533262 to 85533283 21 - TSS region transcription start site region 33881
Gm42812 3 85544316 to 85553389 9073 - lincRNA gene predicted gene 42812
Gm15535 3 85556046 to 85573945 17899 - sense intronic lncRNA gene predicted gene 15535
Cpgi13320 3 85573924 to 85574392 468 CpG island CpG island 13320
Tssr29764 3 85574109 to 85574148 39 + TSS region transcription start site region 29764
Gatb 3 85574119 to 85655622 81503 + protein coding gene glutamyl-tRNA(Gln) amidotransferase, subunit B
Gm46809 3 85577513 to 85589826 12313 + lncRNA gene predicted gene, 46809
Tssr29765 3 85581133 to 85581148 15 + TSS region transcription start site region 29765
Tssr29766 3 85608323 to 85608336 13 + TSS region transcription start site region 29766
Fam160a1 3 85660063 to 85785302 125239 - protein coding gene family with sequence similarity 160, member A1
Tssr29767 3 85712319 to 85712320 1 + TSS region transcription start site region 29767
Gm40082 3 85712729 to 85717762 5033 + lncRNA gene predicted gene, 40082
Tssr33882 3 85778122 to 85778126 4 - TSS region transcription start site region 33882
Gm19068 3 85785233 to 85786000 767 + pseudogene predicted gene, 19068
D3Mit211 3 85826313 to 85826408 95 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 211