Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:82088036-83008054

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57 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gucy1a1 3 82092427 to 82145789 53362 - protein coding gene guanylate cyclase 1, soluble, alpha 1
Tssr33782 3 82093456 to 82093470 14 - TSS region transcription start site region 33782
Tssr33783 3 82093714 to 82093727 13 - TSS region transcription start site region 33783
Mir7010 3 82106247 to 82106309 62 - miRNA gene microRNA 7010
Cpgi13287 3 82108815 to 82109008 193 CpG island CpG island 13287
Cpgi13288 3 82144872 to 82145735 863 CpG island CpG island 13288
Tssr33784 3 82145738 to 82145754 16 - TSS region transcription start site region 33784
Tssr33785 3 82145758 to 82145843 85 - TSS region transcription start site region 33785
Tssr33786 3 82145865 to 82145883 18 - TSS region transcription start site region 33786
Gm29921 3 82146398 to 82236800 90402 - lncRNA gene predicted gene, 29921
Tssr912 3 82271795 to 82271816 21 + TSS region transcription start site region 912
Tssr33787 3 82274699 to 82274709 10 - TSS region transcription start site region 33787
Tssr913 3 82308415 to 82308442 27 + TSS region transcription start site region 913
Cpgi13289 3 82357747 to 82358664 917 CpG island CpG island 13289
Map9 3 82358044 to 82395268 37224 + protein coding gene microtubule-associated protein 9
Tssr29629 3 82358056 to 82358075 19 + TSS region transcription start site region 29629
Tssr29630 3 82358100 to 82358111 11 + TSS region transcription start site region 29630
Tssr29631 3 82358133 to 82358165 32 + TSS region transcription start site region 29631
Tssr29632 3 82358167 to 82358185 18 + TSS region transcription start site region 29632
Tssr29633 3 82358189 to 82358200 11 + TSS region transcription start site region 29633
Tssr29634 3 82358205 to 82358213 8 + TSS region transcription start site region 29634
Tssr914 3 82358215 to 82358220 5 + TSS region transcription start site region 914
Tssr29635 3 82370557 to 82370558 1 + TSS region transcription start site region 29635
Tssr29636 3 82380154 to 82380171 17 + TSS region transcription start site region 29636
Tssr29637 3 82380187 to 82380207 20 + TSS region transcription start site region 29637
Tssr33788 3 82425163 to 82425164 1 - TSS region transcription start site region 33788
D3Mit186 3 82431455 to 82431553 98 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 186
Npy2r 3 82538383 to 82548084 9701 - protein coding gene neuropeptide Y receptor Y2
Cpgi13290 3 82547977 to 82548744 767 CpG island CpG island 13290
Tssr33789 3 82548036 to 82548054 18 - TSS region transcription start site region 33789
Tssr33790 3 82548091 to 82548102 11 - TSS region transcription start site region 33790
D3Mit230 3 82562372 to 82562517 145 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 230
Gm35323 3 82577577 to 82578075 498 + pseudogene predicted gene, 35323
Gm29999 3 82660521 to 82664900 4379 - lncRNA gene predicted gene, 29999
D3Ertd508e 3 82663244 to 82663492 248 DNA segment DNA segment, Chr 3, ERATO Doi 508, expressed
Cpgi13291 3 82663701 to 82663928 227 CpG island CpG island 13291
Gm43347 3 82671988 to 82672567 579 - pseudogene predicted gene 43347
D3Mit339.1 3 82710192 to 82710310 118 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 339.1
Gm30043 3 82754524 to 82759860 5336 + lincRNA gene predicted gene, 30043
Gm22038 3 82793656 to 82793897 241 - unclassified non-coding RNA gene predicted gene, 22038
Gm43348 3 82794975 to 82812234 17259 - lincRNA gene predicted gene 43348
Elads1 3 82802039 to 82802039 0 QTL ENU induced lung adenoma susceptibility 1
Rbm46 3 82837228 to 82876483 39255 - protein coding gene RNA binding motif protein 46
Cpgi13292 3 82875786 to 82876735 949 CpG island CpG island 13292
Tssr33791 3 82876383 to 82876423 40 - TSS region transcription start site region 33791
Tssr33792 3 82876508 to 82876527 19 - TSS region transcription start site region 33792
Tssr29638 3 82876696 to 82876707 11 + TSS region transcription start site region 29638
Rbm46os 3 82876705 to 82943638 66933 + antisense lncRNA gene RNA binding motif protein 46, opposite strand
Lrat 3 82892582 to 82903974 11392 - protein coding gene lecithin-retinol acyltransferase (phosphatidylcholine-retinol-O-acyltransferase)
Cpgi13293 3 82903346 to 82904671 1325 CpG island CpG island 13293
Tssr33793 3 82903917 to 82903928 11 - TSS region transcription start site region 33793
Tssr915 3 82903953 to 82903960 7 - TSS region transcription start site region 915
Tssr33794 3 82903963 to 82903981 18 - TSS region transcription start site region 33794
Gm30097 3 82981476 to 83008415 26939 - lincRNA gene predicted gene, 30097
Cpgi13294 3 82995419 to 82995739 320 CpG island CpG island 13294
Fgg 3 83007724 to 83015049 7325 + protein coding gene fibrinogen gamma chain
Tssr29639 3 83007850 to 83007868 18 + TSS region transcription start site region 29639