Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:81393412-82540728

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54 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm37300 3 81405293 to 81405572 279 - pseudogene predicted gene, 37300
Gm4857 3 81556041 to 81556825 784 - pseudogene predicted gene 4857
Gm43346 3 81721676 to 81724030 2354 + lincRNA gene predicted gene 43346
A830029E22Rik 3 81802025 to 81805161 3136 + lincRNA gene RIKEN cDNA A830029E22 gene
Gm22531 3 81880727 to 81880866 139 + snoRNA gene predicted gene, 22531
Gm9989 3 81918008 to 81924463 6455 - lncRNA gene predicted gene 9989
Cpgi13284 3 81932569 to 81932843 274 CpG island CpG island 13284
Ctso 3 81932601 to 81956725 24124 + protein coding gene cathepsin O
Tssr29625 3 81932608 to 81932634 26 + TSS region transcription start site region 29625
Tssr29626 3 81932635 to 81932664 29 + TSS region transcription start site region 29626
Tssr29627 3 81932666 to 81932680 14 + TSS region transcription start site region 29627
Tdo2 3 81958412 to 81975728 17316 - protein coding gene tryptophan 2,3-dioxygenase
Tssr33774 3 81958611 to 81958620 9 - TSS region transcription start site region 33774
Tssr33775 3 81965101 to 81965105 4 - TSS region transcription start site region 33775
Tssr33776 3 81965137 to 81965159 22 - TSS region transcription start site region 33776
Tssr33777 3 81968283 to 81968285 2 - TSS region transcription start site region 33777
Tssr33778 3 81974543 to 81974550 7 - TSS region transcription start site region 33778
Tssr33779 3 81975742 to 81975760 18 - TSS region transcription start site region 33779
Tssr33780 3 81975859 to 81975861 2 - TSS region transcription start site region 33780
Asic5 3 81982293 to 82021233 38940 + protein coding gene acid-sensing (proton-gated) ion channel family member 5
Tssr29628 3 81995696 to 81995709 13 + TSS region transcription start site region 29628
D3Mit229 3 82019057 to 82019156 99 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 229
Gucy1b1 3 82032006 to 82074689 42683 - protein coding gene guanylate cyclase 1, soluble, beta 1
Cpgi13285 3 82046502 to 82046723 221 CpG island CpG island 13285
Cpgi13286 3 82073662 to 82074789 1127 CpG island CpG island 13286
Tssr33781 3 82074639 to 82074716 77 - TSS region transcription start site region 33781
Gucy1a1 3 82092427 to 82145789 53362 - protein coding gene guanylate cyclase 1, soluble, alpha 1
Tssr33782 3 82093456 to 82093470 14 - TSS region transcription start site region 33782
Tssr33783 3 82093714 to 82093727 13 - TSS region transcription start site region 33783
Mir7010 3 82106247 to 82106309 62 - miRNA gene microRNA 7010
Cpgi13287 3 82108815 to 82109008 193 CpG island CpG island 13287
Cpgi13288 3 82144872 to 82145735 863 CpG island CpG island 13288
Tssr33784 3 82145738 to 82145754 16 - TSS region transcription start site region 33784
Tssr33785 3 82145758 to 82145843 85 - TSS region transcription start site region 33785
Tssr33786 3 82145865 to 82145883 18 - TSS region transcription start site region 33786
Gm29921 3 82146398 to 82236800 90402 - lncRNA gene predicted gene, 29921
Tssr912 3 82271795 to 82271816 21 + TSS region transcription start site region 912
Tssr33787 3 82274699 to 82274709 10 - TSS region transcription start site region 33787
Tssr913 3 82308415 to 82308442 27 + TSS region transcription start site region 913
Cpgi13289 3 82357747 to 82358664 917 CpG island CpG island 13289
Map9 3 82358044 to 82395268 37224 + protein coding gene microtubule-associated protein 9
Tssr29629 3 82358056 to 82358075 19 + TSS region transcription start site region 29629
Tssr29630 3 82358100 to 82358111 11 + TSS region transcription start site region 29630
Tssr29631 3 82358133 to 82358165 32 + TSS region transcription start site region 29631
Tssr29632 3 82358167 to 82358185 18 + TSS region transcription start site region 29632
Tssr29633 3 82358189 to 82358200 11 + TSS region transcription start site region 29633
Tssr29634 3 82358205 to 82358213 8 + TSS region transcription start site region 29634
Tssr914 3 82358215 to 82358220 5 + TSS region transcription start site region 914
Tssr29635 3 82370557 to 82370558 1 + TSS region transcription start site region 29635
Tssr29636 3 82380154 to 82380171 17 + TSS region transcription start site region 29636
Tssr29637 3 82380187 to 82380207 20 + TSS region transcription start site region 29637
Tssr33788 3 82425163 to 82425164 1 - TSS region transcription start site region 33788
D3Mit186 3 82431455 to 82431553 98 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 186
Npy2r 3 82538383 to 82548084 9701 - protein coding gene neuropeptide Y receptor Y2