Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:79967954-82098774

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89 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm40074 3 80059872 to 80101607 41735 + lncRNA gene predicted gene, 40074
Gm19066 3 80088114 to 80089161 1047 - pseudogene predicted gene, 19066
Gm43839 3 80134132 to 80136456 2324 + unclassified gene predicted gene 43839
Gm38295 3 80194480 to 80194630 150 - pseudogene predicted gene, 38295
Gm37892 3 80202492 to 80205598 3106 - antisense lncRNA gene predicted gene, 37892
A330069K06Rik 3 80204030 to 80212442 8412 + lincRNA gene RIKEN cDNA A330069K06 gene
Gm37971 3 80285123 to 80334595 49472 - lincRNA gene predicted gene, 37971
Tssr29613 3 80387544 to 80387548 4 + TSS region transcription start site region 29613
Gm6706 3 80399349 to 80399666 317 - pseudogene predicted gene 6706
D3Mit359 3 80408895 to 80409146 251 DNA segment DNA Segment, Chr 3, Massachusetts Institute of Technology-359
Gria2 3 80682904 to 80803204 120300 - protein coding gene glutamate receptor, ionotropic, AMPA2 (alpha 2)
Tssr29614 3 80687990 to 80687994 4 + TSS region transcription start site region 29614
Tssr33755 3 80688116 to 80688130 14 - TSS region transcription start site region 33755
Tssr33756 3 80688135 to 80688146 11 - TSS region transcription start site region 33756
Tssr33757 3 80688268 to 80688305 37 - TSS region transcription start site region 33757
Tssr33758 3 80688319 to 80688334 15 - TSS region transcription start site region 33758
Tssr33759 3 80688337 to 80688365 28 - TSS region transcription start site region 33759
Tssr33760 3 80688445 to 80688466 21 - TSS region transcription start site region 33760
Tssr33761 3 80688474 to 80688488 14 - TSS region transcription start site region 33761
Tssr33762 3 80691137 to 80691146 9 - TSS region transcription start site region 33762
Gm25749 3 80692203 to 80692313 110 - miRNA gene predicted gene, 25749
Tssr33763 3 80717488 to 80717490 2 - TSS region transcription start site region 33763
Tssr33764 3 80797980 to 80797996 16 - TSS region transcription start site region 33764
Cpgi13280 3 80800436 to 80801470 1034 CpG island CpG island 13280
Tssr29615 3 80800525 to 80800532 7 + TSS region transcription start site region 29615
Tssr29616 3 80800546 to 80800555 9 + TSS region transcription start site region 29616
Cpgi13281 3 80802510 to 80803168 658 CpG island CpG island 13281
Tssr33765 3 80802590 to 80802601 11 - TSS region transcription start site region 33765
Tssr33766 3 80802604 to 80802617 13 - TSS region transcription start site region 33766
Tssr33767 3 80802633 to 80802644 11 - TSS region transcription start site region 33767
Tssr33768 3 80802651 to 80802672 21 - TSS region transcription start site region 33768
Tssr33769 3 80802679 to 80802730 51 - TSS region transcription start site region 33769
Tssr33770 3 80802745 to 80802770 25 - TSS region transcription start site region 33770
Tssr33771 3 80802789 to 80802840 51 - TSS region transcription start site region 33771
2900092N11Rik 3 80843154 to 80843546 392 unclassified gene RIKEN cDNA 2900092N11 gene
Glrb 3 80843599 to 80913660 70061 - protein coding gene glycine receptor, beta subunit
Tssr33772 3 80879696 to 80879715 19 - TSS region transcription start site region 33772
Gm18545 3 80885092 to 80886992 1900 + pseudogene predicted gene, 18545
Cpgi13282 3 80913070 to 80914238 1168 CpG island CpG island 13282
Tssr33773 3 80913542 to 80913666 124 - TSS region transcription start site region 33773
Gm42468 3 80962960 to 80971627 8667 + lincRNA gene predicted gene 42468
Gm29808 3 81000994 to 81001461 467 + pseudogene predicted gene, 29808
D3Dcr8 3 81029882 to 81029977 95 DNA segment DNA Segment, Chr 3, Derry C. Roopenian 8
Gm42476 3 81032954 to 81033774 820 + lincRNA gene predicted gene 42476
Cpgi13283 3 81036232 to 81037827 1595 CpG island CpG island 13283
Tssr29617 3 81036360 to 81036371 11 + TSS region transcription start site region 29617
Pdgfc 3 81036416 to 81214040 177624 + protein coding gene platelet-derived growth factor, C polypeptide
Tssr29618 3 81036638 to 81036738 100 + TSS region transcription start site region 29618
Tssr29619 3 81036965 to 81037011 46 + TSS region transcription start site region 29619
Tssr29620 3 81037065 to 81037076 11 + TSS region transcription start site region 29620
Tssr29621 3 81037137 to 81037205 68 + TSS region transcription start site region 29621
Tssr29622 3 81037212 to 81037225 13 + TSS region transcription start site region 29622
Tssr29623 3 81037379 to 81037391 12 + TSS region transcription start site region 29623
Gm16000 3 81037408 to 81040437 3029 - antisense lncRNA gene predicted gene 16000
D3Mit245 3 81086398 to 81086547 149 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 245
D3Dcr9 3 81150097 to 81150193 96 DNA segment DNA Segment, Chr 3, Derry C. Roopenian 9
D3Mit358 3 81150108 to 81150222 114 DNA segment DNA Segment, Chr 3, Massachusetts Institute of Technology-358
D3Dcr10 3 81168399 to 81168497 98 DNA segment DNA Segment, Chr 3, Derry C. Roopenian 10
Tssr29624 3 81208993 to 81209001 8 + TSS region transcription start site region 29624
D3Dcr11 3 81249103 to 81249198 95 DNA segment DNA Segment, Chr 3, Derry C. Roopenian 11
Gm37300 3 81405293 to 81405572 279 - pseudogene predicted gene, 37300
Gm4857 3 81556041 to 81556825 784 - pseudogene predicted gene 4857
Gm43346 3 81721676 to 81724030 2354 + lincRNA gene predicted gene 43346
A830029E22Rik 3 81802025 to 81805161 3136 + lincRNA gene RIKEN cDNA A830029E22 gene
Gm22531 3 81880727 to 81880866 139 + snoRNA gene predicted gene, 22531
Gm9989 3 81918008 to 81924463 6455 - lncRNA gene predicted gene 9989
Cpgi13284 3 81932569 to 81932843 274 CpG island CpG island 13284
Ctso 3 81932601 to 81956725 24124 + protein coding gene cathepsin O
Tssr29625 3 81932608 to 81932634 26 + TSS region transcription start site region 29625
Tssr29626 3 81932635 to 81932664 29 + TSS region transcription start site region 29626
Tssr29627 3 81932666 to 81932680 14 + TSS region transcription start site region 29627
Tdo2 3 81958412 to 81975728 17316 - protein coding gene tryptophan 2,3-dioxygenase
Tssr33774 3 81958611 to 81958620 9 - TSS region transcription start site region 33774
Tssr33775 3 81965101 to 81965105 4 - TSS region transcription start site region 33775
Tssr33776 3 81965137 to 81965159 22 - TSS region transcription start site region 33776
Tssr33777 3 81968283 to 81968285 2 - TSS region transcription start site region 33777
Tssr33778 3 81974543 to 81974550 7 - TSS region transcription start site region 33778
Tssr33779 3 81975742 to 81975760 18 - TSS region transcription start site region 33779
Tssr33780 3 81975859 to 81975861 2 - TSS region transcription start site region 33780
Asic5 3 81982293 to 82021233 38940 + protein coding gene acid-sensing (proton-gated) ion channel family member 5
Tssr29628 3 81995696 to 81995709 13 + TSS region transcription start site region 29628
D3Mit229 3 82019057 to 82019156 99 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 229
Gucy1b1 3 82032006 to 82074689 42683 - protein coding gene guanylate cyclase 1, soluble, beta 1
Cpgi13285 3 82046502 to 82046723 221 CpG island CpG island 13285
Cpgi13286 3 82073662 to 82074789 1127 CpG island CpG island 13286
Tssr33781 3 82074639 to 82074716 77 - TSS region transcription start site region 33781
Gucy1a1 3 82092427 to 82145789 53362 - protein coding gene guanylate cyclase 1, soluble, alpha 1
Tssr33782 3 82093456 to 82093470 14 - TSS region transcription start site region 33782
Tssr33783 3 82093714 to 82093727 13 - TSS region transcription start site region 33783