Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:78924425-79704650

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174 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm38542 3 78918459 to 78936306 17847 - lncRNA gene predicted gene, 38542
Gm9762 3 78966356 to 78966799 443 - pseudogene predicted pseudogene 9762
Cpgi13272 3 78966800 to 78967303 503 CpG island CpG island 13272
Gm23440 3 78979922 to 78980051 129 + snoRNA gene predicted gene, 23440
Tssr29573 3 79028436 to 79028442 6 + TSS region transcription start site region 29573
Rapgef2 3 79062516 to 79286517 224001 - protein coding gene Rap guanine nucleotide exchange factor (GEF) 2
Tssr33613 3 79063545 to 79063548 3 - TSS region transcription start site region 33613
Cpgi13273 3 79066519 to 79066884 365 CpG island CpG island 13273
Tssr33614 3 79075391 to 79075425 34 - TSS region transcription start site region 33614
Tssr33615 3 79076304 to 79076331 27 - TSS region transcription start site region 33615
Tssr33616 3 79076590 to 79076599 9 - TSS region transcription start site region 33616
Tssr33617 3 79078896 to 79078920 24 - TSS region transcription start site region 33617
Tssr33618 3 79082515 to 79082517 2 - TSS region transcription start site region 33618
Tssr33619 3 79083596 to 79083616 20 - TSS region transcription start site region 33619
Tssr33620 3 79091921 to 79091932 11 - TSS region transcription start site region 33620
Tssr33621 3 79092758 to 79092778 20 - TSS region transcription start site region 33621
Tssr33622 3 79097298 to 79097336 38 - TSS region transcription start site region 33622
Tssr33623 3 79097643 to 79097653 10 - TSS region transcription start site region 33623
Tssr33624 3 79097708 to 79097754 46 - TSS region transcription start site region 33624
Tssr33625 3 79100007 to 79100024 17 - TSS region transcription start site region 33625
Tssr33626 3 79126527 to 79126540 13 - TSS region transcription start site region 33626
Tssr33627 3 79129422 to 79129430 8 - TSS region transcription start site region 33627
Tssr33628 3 79138469 to 79138473 4 - TSS region transcription start site region 33628
Tssr33629 3 79140794 to 79140831 37 - TSS region transcription start site region 33629
Tssr33630 3 79142964 to 79142966 2 - TSS region transcription start site region 33630
Tssr33631 3 79144406 to 79144410 4 - TSS region transcription start site region 33631
Tssr33632 3 79145912 to 79145930 18 - TSS region transcription start site region 33632
Tssr33633 3 79147501 to 79147504 3 - TSS region transcription start site region 33633
Tssr33634 3 79152858 to 79152878 20 - TSS region transcription start site region 33634
Tssr33635 3 79154788 to 79154792 4 - TSS region transcription start site region 33635
Tssr33636 3 79156160 to 79156177 17 - TSS region transcription start site region 33636
Tssr33637 3 79156188 to 79156203 15 - TSS region transcription start site region 33637
Tssr33638 3 79156289 to 79156300 11 - TSS region transcription start site region 33638
Tssr33639 3 79156341 to 79156364 23 - TSS region transcription start site region 33639
Tssr33640 3 79156573 to 79156586 13 - TSS region transcription start site region 33640
Tssr33641 3 79156620 to 79156635 15 - TSS region transcription start site region 33641
Tssr33642 3 79156640 to 79156651 11 - TSS region transcription start site region 33642
Tssr33643 3 79156692 to 79156702 10 - TSS region transcription start site region 33643
Tssr33644 3 79156707 to 79156730 23 - TSS region transcription start site region 33644
Tssr33645 3 79156731 to 79156743 12 - TSS region transcription start site region 33645
Tssr33646 3 79157088 to 79157098 10 - TSS region transcription start site region 33646
Tssr33647 3 79157160 to 79157173 13 - TSS region transcription start site region 33647
Tssr33648 3 79157194 to 79157225 31 - TSS region transcription start site region 33648
Tssr33649 3 79157257 to 79157264 7 - TSS region transcription start site region 33649
Tssr33650 3 79157270 to 79157282 12 - TSS region transcription start site region 33650
Tssr33651 3 79157367 to 79157391 24 - TSS region transcription start site region 33651
Tssr33652 3 79157613 to 79157623 10 - TSS region transcription start site region 33652
Tssr33653 3 79157837 to 79157846 9 - TSS region transcription start site region 33653
Tssr33654 3 79158222 to 79158248 26 - TSS region transcription start site region 33654
Tssr33655 3 79158669 to 79158680 11 - TSS region transcription start site region 33655
Tssr33656 3 79158691 to 79158703 12 - TSS region transcription start site region 33656
Tssr33657 3 79158760 to 79158812 52 - TSS region transcription start site region 33657
Tssr33658 3 79159048 to 79159093 45 - TSS region transcription start site region 33658
Tssr33659 3 79159412 to 79159430 18 - TSS region transcription start site region 33659
Tssr33660 3 79159475 to 79159502 27 - TSS region transcription start site region 33660
Tssr33661 3 79159518 to 79159529 11 - TSS region transcription start site region 33661
Tssr33662 3 79159622 to 79159631 9 - TSS region transcription start site region 33662
Tssr33663 3 79159903 to 79159915 12 - TSS region transcription start site region 33663
Tssr29574 3 79161645 to 79161673 28 + TSS region transcription start site region 29574
Tssr33664 3 79162668 to 79162675 7 - TSS region transcription start site region 33664
Tssr33665 3 79162842 to 79162853 11 - TSS region transcription start site region 33665
Tssr33666 3 79163778 to 79163780 2 - TSS region transcription start site region 33666
Tssr33667 3 79166024 to 79166044 20 - TSS region transcription start site region 33667
Tssr33668 3 79169567 to 79169578 11 - TSS region transcription start site region 33668
Tssr33669 3 79169806 to 79169817 11 - TSS region transcription start site region 33669
Tssr33670 3 79169876 to 79169889 13 - TSS region transcription start site region 33670
Tssr33671 3 79170472 to 79170512 40 - TSS region transcription start site region 33671
Tssr33672 3 79173050 to 79173057 7 - TSS region transcription start site region 33672
Tssr33673 3 79173134 to 79173151 17 - TSS region transcription start site region 33673
Tssr33674 3 79173171 to 79173183 12 - TSS region transcription start site region 33674
Tssr33675 3 79173188 to 79173246 58 - TSS region transcription start site region 33675
Tssr33676 3 79173256 to 79173259 3 - TSS region transcription start site region 33676
Tssr33677 3 79173266 to 79173277 11 - TSS region transcription start site region 33677
Tssr33678 3 79173289 to 79173309 20 - TSS region transcription start site region 33678
Tssr33679 3 79173348 to 79173360 12 - TSS region transcription start site region 33679
Tssr33680 3 79181325 to 79181351 26 - TSS region transcription start site region 33680
Tssr33681 3 79181356 to 79181372 16 - TSS region transcription start site region 33681
Gm24150 3 79196374 to 79196477 103 + snRNA gene predicted gene, 24150
4921511C10Rik 3 79212919 to 79253913 40994 + antisense lncRNA gene RIKEN cDNA 4921511C10 gene
B930012P20Rik 3 79232281 to 79234124 1843 unclassified gene RIKEN cDNA B930012P20 gene
Tssr29575 3 79237911 to 79237922 11 + TSS region transcription start site region 29575
Tssr33682 3 79269758 to 79269763 5 - TSS region transcription start site region 33682
Cpgi13274 3 79286146 to 79287860 1714 CpG island CpG island 13274
Tssr33683 3 79286696 to 79286726 30 - TSS region transcription start site region 33683
Tssr33684 3 79287001 to 79287015 14 - TSS region transcription start site region 33684
Tssr33685 3 79287170 to 79287236 66 - TSS region transcription start site region 33685
6430573P05Rik 3 79287173 to 79289848 2675 + lincRNA gene RIKEN cDNA 6430573P05 gene
Tssr33686 3 79287244 to 79287255 11 - TSS region transcription start site region 33686
Tssr33687 3 79287269 to 79287294 25 - TSS region transcription start site region 33687
Tssr33688 3 79287307 to 79287318 11 - TSS region transcription start site region 33688
Tssr33689 3 79287327 to 79287343 16 - TSS region transcription start site region 33689
D3Ertd207e 3 79314425 to 79314650 225 DNA segment DNA segment, Chr 3, ERATO Doi 207, expressed
Gm40072 3 79334205 to 79336576 2371 - lncRNA gene predicted gene, 40072
Tssr29576 3 79336622 to 79336646 24 + TSS region transcription start site region 29576
Tssr29577 3 79336650 to 79336686 36 + TSS region transcription start site region 29577
Tssr29578 3 79336688 to 79336695 7 + TSS region transcription start site region 29578
Gm17359 3 79345329 to 79464129 118800 + protein coding gene predicted gene, 17359
Tssr29579 3 79345336 to 79345349 13 + TSS region transcription start site region 29579
Tssr29580 3 79345361 to 79345380 19 + TSS region transcription start site region 29580
Tssr29581 3 79418473 to 79418475 2 + TSS region transcription start site region 29581
Tssr33690 3 79450548 to 79450553 5 - TSS region transcription start site region 33690
Fnip2 3 79455974 to 79567796 111822 - protein coding gene folliculin interacting protein 2
Tssr33691 3 79457009 to 79457038 29 - TSS region transcription start site region 33691
Tssr33692 3 79458371 to 79458406 35 - TSS region transcription start site region 33692
Tssr33693 3 79458497 to 79458524 27 - TSS region transcription start site region 33693
Tssr33694 3 79458812 to 79458829 17 - TSS region transcription start site region 33694
Tssr33695 3 79479674 to 79479678 4 - TSS region transcription start site region 33695
Tssr33696 3 79481526 to 79481538 12 - TSS region transcription start site region 33696
Tssr33697 3 79483188 to 79483203 15 - TSS region transcription start site region 33697
Tssr33698 3 79509321 to 79509338 17 - TSS region transcription start site region 33698
Gm36442 3 79509794 to 79512100 2306 - lncRNA gene predicted gene, 36442
Tssr33699 3 79511174 to 79511199 25 - TSS region transcription start site region 33699
Tssr33700 3 79511609 to 79511656 47 - TSS region transcription start site region 33700
Tssr33701 3 79516329 to 79516345 16 - TSS region transcription start site region 33701
Tssr33702 3 79521326 to 79521344 18 - TSS region transcription start site region 33702
Tssr33703 3 79521376 to 79521389 13 - TSS region transcription start site region 33703
Tssr33704 3 79525949 to 79525971 22 - TSS region transcription start site region 33704
Tssr29582 3 79529957 to 79529970 13 + TSS region transcription start site region 29582
Tssr33705 3 79531659 to 79531670 11 - TSS region transcription start site region 33705
Tssr33706 3 79531677 to 79531688 11 - TSS region transcription start site region 33706
Tssr33707 3 79531695 to 79531706 11 - TSS region transcription start site region 33707
Tssr33708 3 79531717 to 79531728 11 - TSS region transcription start site region 33708
Tssr33709 3 79531737 to 79531746 9 - TSS region transcription start site region 33709
Tssr33710 3 79531758 to 79531784 26 - TSS region transcription start site region 33710
Tssr33711 3 79531793 to 79531804 11 - TSS region transcription start site region 33711
Tssr33712 3 79531831 to 79531842 11 - TSS region transcription start site region 33712
Tssr33713 3 79531874 to 79531886 12 - TSS region transcription start site region 33713
Tssr29583 3 79532010 to 79532023 13 + TSS region transcription start site region 29583
Tssr33714 3 79532060 to 79532087 27 - TSS region transcription start site region 33714
Tssr33715 3 79532164 to 79532175 11 - TSS region transcription start site region 33715
Tssr33716 3 79532841 to 79532845 4 - TSS region transcription start site region 33716
Tssr33717 3 79539733 to 79539776 43 - TSS region transcription start site region 33717
Tssr29584 3 79542837 to 79542855 18 + TSS region transcription start site region 29584
Tssr33718 3 79549537 to 79549544 7 - TSS region transcription start site region 33718
Tssr33719 3 79550355 to 79550394 39 - TSS region transcription start site region 33719
Tssr33720 3 79551064 to 79551088 24 - TSS region transcription start site region 33720
Gm3513 3 79551314 to 79552193 879 - sense intronic lncRNA gene predicted gene 3513
Tssr33721 3 79552158 to 79552207 49 - TSS region transcription start site region 33721
Tssr33722 3 79564912 to 79564917 5 - TSS region transcription start site region 33722
Cpgi13275 3 79566933 to 79568262 1329 CpG island CpG island 13275
Tssr33723 3 79567358 to 79567375 17 - TSS region transcription start site region 33723
Tssr33724 3 79567685 to 79567694 9 - TSS region transcription start site region 33724
Tssr33725 3 79567747 to 79567764 17 - TSS region transcription start site region 33725
Tssr33726 3 79567771 to 79567790 19 - TSS region transcription start site region 33726
Tssr33727 3 79567805 to 79567863 58 - TSS region transcription start site region 33727
Tssr33728 3 79568102 to 79568154 52 - TSS region transcription start site region 33728
4930589L23Rik 3 79568192 to 79572580 4388 + lincRNA gene RIKEN cDNA 4930589L23 gene
Tssr29585 3 79568302 to 79568312 10 + TSS region transcription start site region 29585
Tssr33729 3 79572403 to 79572451 48 - TSS region transcription start site region 33729
Tssr33730 3 79572458 to 79572473 15 - TSS region transcription start site region 33730
Gm35067 3 79582588 to 79583234 646 + pseudogene predicted gene, 35067
Cpgi13276 3 79591155 to 79591861 706 CpG island CpG island 13276
Tssr33731 3 79591281 to 79591295 14 - TSS region transcription start site region 33731
Tssr33732 3 79591297 to 79591322 25 - TSS region transcription start site region 33732
Tssr29586 3 79591356 to 79591430 74 + TSS region transcription start site region 29586
Ppid 3 79591389 to 79603650 12261 + protein coding gene peptidylprolyl isomerase D (cyclophilin D)
Tssr29587 3 79591437 to 79591448 11 + TSS region transcription start site region 29587
Etfdh 3 79603788 to 79628767 24979 - protein coding gene electron transferring flavoprotein, dehydrogenase
Gm37973 3 79610538 to 79611826 1288 - unclassified gene predicted gene, 37973
Tssr33733 3 79622788 to 79622795 7 - TSS region transcription start site region 33733
Cpgi13277 3 79628490 to 79629686 1196 CpG island CpG island 13277
Tssr33734 3 79628636 to 79628647 11 - TSS region transcription start site region 33734
Tssr33735 3 79628660 to 79628745 85 - TSS region transcription start site region 33735
Tssr33736 3 79628752 to 79628763 11 - TSS region transcription start site region 33736
Tssr33737 3 79628859 to 79628870 11 - TSS region transcription start site region 33737
Tssr33738 3 79628884 to 79628885 1 - TSS region transcription start site region 33738
Tssr29588 3 79629074 to 79629115 41 + TSS region transcription start site region 29588
4930579G24Rik 3 79629079 to 79632820 3741 + protein coding gene RIKEN cDNA 4930579G24 gene
Tssr29589 3 79629117 to 79629134 17 + TSS region transcription start site region 29589
Tssr29590 3 79629139 to 79629176 37 + TSS region transcription start site region 29590
Rxfp1 3 79641611 to 79737880 96269 - protein coding gene relaxin/insulin-like family peptide receptor 1
Gm26984 3 79673367 to 79676876 3509 - sense intronic lncRNA gene predicted gene, 26984
D3Mit26.2 3 79680094 to 79680257 163 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 26.2
D3Mit26 3 79680241 to 79680390 149 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 26