Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:72742267-75742596

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85 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
D3Mit309 3 72802652 to 72802765 113 DNA segment DNA Segment, Chr 3, Massachusetts Institute of Technology 309
Tssr29554 3 72868619 to 72868626 7 + TSS region transcription start site region 29554
Sis 3 72888557 to 72967863 79306 - protein coding gene sucrase isomaltase (alpha-glucosidase)
Tssr33562 3 72900047 to 72900053 6 - TSS region transcription start site region 33562
Tssr33563 3 72903642 to 72903678 36 - TSS region transcription start site region 33563
Tssr33564 3 72904427 to 72904459 32 - TSS region transcription start site region 33564
Tssr33565 3 72942203 to 72942206 3 - TSS region transcription start site region 33565
Tssr33566 3 72962132 to 72962137 5 - TSS region transcription start site region 33566
Tssr33567 3 72967854 to 72967869 15 - TSS region transcription start site region 33567
Tssr33568 3 72967964 to 72967970 6 - TSS region transcription start site region 33568
Gm37056 3 73041975 to 73043839 1864 - unclassified gene predicted gene, 37056
Slitrk3 3 73047265 to 73057803 10538 - protein coding gene SLIT and NTRK-like family, member 3
Cpgi13264 3 73047669 to 73047885 216 CpG island CpG island 13264
Tssr33569 3 73047948 to 73047958 10 - TSS region transcription start site region 33569
Cpgi13265 3 73053451 to 73053903 452 CpG island CpG island 13265
Cpgi13266 3 73056486 to 73057012 526 CpG island CpG island 13266
Cpgi13267 3 73057243 to 73057813 570 CpG island CpG island 13267
Tssr33570 3 73057594 to 73057605 11 - TSS region transcription start site region 33570
Tssr29555 3 73066296 to 73066329 33 + TSS region transcription start site region 29555
Tssr29556 3 73066332 to 73066344 12 + TSS region transcription start site region 29556
Tssr29557 3 73066345 to 73066359 14 + TSS region transcription start site region 29557
Gm20754 3 73066351 to 73594830 528479 + lincRNA gene predicted gene, 20754
Tssr29558 3 73121864 to 73121868 4 + TSS region transcription start site region 29558
Gm24544 3 73146849 to 73146958 109 + miRNA gene predicted gene, 24544
Gm37725 3 73164086 to 73166210 2124 + unclassified gene predicted gene, 37725
Gm22538 3 73207703 to 73208001 298 - unclassified non-coding RNA gene predicted gene, 22538
Tssr29559 3 73310613 to 73310614 1 + TSS region transcription start site region 29559
Gm38353 3 73329434 to 73470014 140580 + lincRNA gene predicted gene, 38353
4930509J09Rik 3 73351206 to 73481651 130445 - lincRNA gene RIKEN cDNA 4930509J09 gene
Tssr29560 3 73397555 to 73397559 4 + TSS region transcription start site region 29560
Bche 3 73635808 to 73708415 72607 - protein coding gene butyrylcholinesterase
Tssr33571 3 73636694 to 73636707 13 - TSS region transcription start site region 33571
Tssr905 3 73643793 to 73643799 6 + TSS region transcription start site region 905
Tssr33572 3 73706659 to 73706670 11 - TSS region transcription start site region 33572
Tssr33573 3 73708202 to 73708277 75 - TSS region transcription start site region 33573
Tssr33574 3 73708327 to 73708338 11 - TSS region transcription start site region 33574
Tssr906 3 73708360 to 73708363 3 - TSS region transcription start site region 906
Tssr33575 3 73708368 to 73708384 16 - TSS region transcription start site region 33575
Tssr33576 3 73708399 to 73708423 24 - TSS region transcription start site region 33576
Gm8625 3 73933073 to 73934122 1049 + pseudogene predicted gene 8625
Gm20356 3 74009219 to 74017277 8058 - lincRNA gene predicted gene, 20356
Gm36069 3 74105410 to 74126449 21039 - lncRNA gene predicted gene, 36069
Tssr33577 3 74126380 to 74126390 10 - TSS region transcription start site region 33577
Tssr33578 3 74126428 to 74126438 10 - TSS region transcription start site region 33578
Gm6098 3 74242267 to 74242596 329 - pseudogene predicted gene 6098
Gm37050 3 74323527 to 74323992 465 - pseudogene predicted gene, 37050
Tssr907 3 74588595 to 74588596 1 + TSS region transcription start site region 907
Gm8643 3 74814718 to 74815342 624 + pseudogene predicted gene 8643
Tssr29561 3 74984617 to 74984619 2 + TSS region transcription start site region 29561
Gm37464 3 75022396 to 75024615 2219 - unclassified gene predicted gene, 37464
Zbbx 3 75037907 to 75165034 127127 - protein coding gene zinc finger, B-box domain containing
Tssr33579 3 75143712 to 75143759 47 - TSS region transcription start site region 33579
Tssr908 3 75143769 to 75143773 4 - TSS region transcription start site region 908
Cpgi13268 3 75164869 to 75165147 278 CpG island CpG island 13268
Tssr33580 3 75165012 to 75165055 43 - TSS region transcription start site region 33580
Gm40071 3 75165057 to 75208082 43025 + lncRNA gene predicted gene, 40071
Tssr33581 3 75165060 to 75165061 1 - TSS region transcription start site region 33581
Tssr29562 3 75165084 to 75165108 24 + TSS region transcription start site region 29562
Serpini2 3 75242370 to 75270078 27708 - protein coding gene serine (or cysteine) peptidase inhibitor, clade I, member 2
Tssr33582 3 75268331 to 75268342 11 - TSS region transcription start site region 33582
Tssr33583 3 75269967 to 75270007 40 - TSS region transcription start site region 33583
Tssr33584 3 75270073 to 75270085 12 - TSS region transcription start site region 33584
Tssr909 3 75270108 to 75270119 11 - TSS region transcription start site region 909
Wdr49 3 75273928 to 75431237 157309 - protein coding gene WD repeat domain 49
Gm17836 3 75391319 to 75392620 1301 + pseudogene predicted gene, 17836
Tssr33585 3 75482132 to 75482166 34 - TSS region transcription start site region 33585
Pdcd10 3 75516490 to 75556852 40362 - protein coding gene programmed cell death 10
Cpgi13269 3 75556324 to 75557758 1434 CpG island CpG island 13269
Tssr33586 3 75556789 to 75556871 82 - TSS region transcription start site region 33586
Tssr33587 3 75556903 to 75556919 16 - TSS region transcription start site region 33587
Tssr33588 3 75556924 to 75556939 15 - TSS region transcription start site region 33588
Tssr29563 3 75557510 to 75557521 11 + TSS region transcription start site region 29563
Tssr29564 3 75557530 to 75557561 31 + TSS region transcription start site region 29564
Serpini1 3 75557533 to 75642523 84990 + protein coding gene serine (or cysteine) peptidase inhibitor, clade I, member 1
Tssr29565 3 75557576 to 75557587 11 + TSS region transcription start site region 29565
Tssr29566 3 75557594 to 75557605 11 + TSS region transcription start site region 29566
Tssr29567 3 75562914 to 75562918 4 + TSS region transcription start site region 29567
Gm37672 3 75619347 to 75623360 4013 + unclassified gene predicted gene, 37672
Platr10 3 75647446 to 75655731 8285 - lincRNA gene pluripotency associated transcript 10
Tssr33589 3 75647937 to 75647941 4 - TSS region transcription start site region 33589
Tssr33590 3 75650455 to 75650465 10 - TSS region transcription start site region 33590
Tssr33591 3 75655730 to 75655746 16 - TSS region transcription start site region 33591
Tssr33592 3 75655774 to 75655802 28 - TSS region transcription start site region 33592
Gm37193 3 75698952 to 75699464 512 - unclassified gene predicted gene, 37193
Gm25846 3 75714790 to 75714924 134 + snoRNA gene predicted gene, 25846