Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:69033107-70164446

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111 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Smc4 3 69004972 to 69034623 29651 + protein coding gene structural maintenance of chromosomes 4
Trim59 3 69035288 to 69044755 9467 - protein coding gene tripartite motif-containing 59
Cpgi13256 3 69044061 to 69045524 1463 CpG island CpG island 13256
Tssr33523 3 69044650 to 69044659 9 - TSS region transcription start site region 33523
Tssr33524 3 69044660 to 69044667 7 - TSS region transcription start site region 33524
Tssr33525 3 69044697 to 69044763 66 - TSS region transcription start site region 33525
Tssr33526 3 69044963 to 69044974 11 - TSS region transcription start site region 33526
Tssr33527 3 69044985 to 69044999 14 - TSS region transcription start site region 33527
Tssr29529 3 69045076 to 69045087 11 + TSS region transcription start site region 29529
Tssr29530 3 69045118 to 69045136 18 + TSS region transcription start site region 29530
Cpgi13257 3 69051524 to 69051978 454 CpG island CpG island 13257
9630025H16Rik 3 69060646 to 69065250 4604 + lncRNA gene RIKEN cDNA 9630025H16 gene
Tssr33528 3 69068465 to 69068481 16 - TSS region transcription start site region 33528
Tssr33529 3 69069619 to 69069667 48 - TSS region transcription start site region 33529
Tssr33530 3 69071547 to 69071551 4 - TSS region transcription start site region 33530
Kpna4 3 69072221 to 69127092 54871 - protein coding gene karyopherin (importin) alpha 4
Tssr33531 3 69073561 to 69073575 14 - TSS region transcription start site region 33531
Gm22009 3 69085105 to 69085447 342 - snoRNA gene predicted gene, 22009
Tssr33532 3 69085438 to 69085452 14 - TSS region transcription start site region 33532
Tssr33533 3 69093557 to 69093574 17 - TSS region transcription start site region 33533
Tssr33534 3 69093802 to 69093826 24 - TSS region transcription start site region 33534
Tssr33535 3 69107611 to 69107621 10 - TSS region transcription start site region 33535
Gm37558 3 69119742 to 69122724 2982 - unclassified gene predicted gene, 37558
Tssr33536 3 69125356 to 69125370 14 - TSS region transcription start site region 33536
Cpgi13258 3 69125912 to 69127559 1647 CpG island CpG island 13258
Tssr33537 3 69126841 to 69126885 44 - TSS region transcription start site region 33537
Tssr902 3 69127027 to 69127034 7 - TSS region transcription start site region 902
Tssr33538 3 69127036 to 69127060 24 - TSS region transcription start site region 33538
Tssr33539 3 69127067 to 69127085 18 - TSS region transcription start site region 33539
Tssr33540 3 69127098 to 69127109 11 - TSS region transcription start site region 33540
Gm1647 3 69131233 to 69157177 25944 + lincRNA gene predicted gene 1647
Tssr29531 3 69155023 to 69155032 9 + TSS region transcription start site region 29531
Tssr33541 3 69156156 to 69156157 1 - TSS region transcription start site region 33541
Tssr29532 3 69156796 to 69156838 42 + TSS region transcription start site region 29532
Tssr29533 3 69222375 to 69222384 9 + TSS region transcription start site region 29533
Tssr29534 3 69222412 to 69222427 15 + TSS region transcription start site region 29534
Arl14 3 69222419 to 69223618 1199 + protein coding gene ADP-ribosylation factor-like 14
Gm40070 3 69254608 to 69263830 9222 + lncRNA gene predicted gene, 40070
Cpgi13259 3 69289884 to 69290090 206 CpG island CpG island 13259
Tssr33542 3 69289935 to 69289971 36 - TSS region transcription start site region 33542
Cpgi13260 3 69316236 to 69318551 2315 CpG island CpG island 13260
Tssr33543 3 69316441 to 69316467 26 - TSS region transcription start site region 33543
Tssr29535 3 69316857 to 69316869 12 + TSS region transcription start site region 29535
Tssr29536 3 69316873 to 69316937 64 + TSS region transcription start site region 29536
Ppm1l 3 69316918 to 69560798 243880 + protein coding gene protein phosphatase 1 (formerly 2C)-like
1700037N05Rik 3 69318158 to 69319287 1129 unclassified gene RIKEN cDNA 1700037N05 gene
Tssr33544 3 69319256 to 69319293 37 - TSS region transcription start site region 33544
Gm17214 3 69320045 to 69320585 540 - pseudogene predicted gene 17214
Gm17212 3 69335502 to 69335760 258 - pseudogene predicted gene 17212
Tssr29537 3 69340489 to 69340493 4 + TSS region transcription start site region 29537
Tssr29538 3 69343878 to 69343889 11 + TSS region transcription start site region 29538
Tssr29539 3 69343999 to 69344016 17 + TSS region transcription start site region 29539
Tssr29540 3 69344157 to 69344172 15 + TSS region transcription start site region 29540
Tssr29541 3 69373729 to 69373774 45 + TSS region transcription start site region 29541
A330078L11Rik 3 69376398 to 69383696 7298 unclassified gene RIKEN cDNA A330078L11 gene
Tssr29542 3 69386396 to 69386402 6 + TSS region transcription start site region 29542
Tssr29543 3 69397309 to 69397312 3 + TSS region transcription start site region 29543
Gm17213 3 69431205 to 69432381 1176 - pseudogene predicted gene 17213
Tssr29544 3 69548950 to 69548976 26 + TSS region transcription start site region 29544
Tssr29545 3 69553354 to 69553372 18 + TSS region transcription start site region 29545
Gm8565 3 69566451 to 69567464 1013 - pseudogene predicted gene 8565
B3galnt1 3 69574158 to 69598960 24802 - protein coding gene UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 1
Tssr33545 3 69588069 to 69588080 11 - TSS region transcription start site region 33545
Tssr33546 3 69596242 to 69596246 4 - TSS region transcription start site region 33546
Tssr33547 3 69596272 to 69596279 7 - TSS region transcription start site region 33547
Tssr33548 3 69596291 to 69596294 3 - TSS region transcription start site region 33548
Cpgi13261 3 69598107 to 69599446 1339 CpG island CpG island 13261
Tssr33549 3 69598822 to 69598874 52 - TSS region transcription start site region 33549
Tssr33550 3 69598876 to 69598929 53 - TSS region transcription start site region 33550
Tssr33551 3 69598930 to 69598943 13 - TSS region transcription start site region 33551
Tssr33552 3 69598960 to 69599003 43 - TSS region transcription start site region 33552
Tssr33553 3 69599185 to 69599202 17 - TSS region transcription start site region 33553
Tssr33554 3 69599212 to 69599231 19 - TSS region transcription start site region 33554
Tssr33555 3 69599248 to 69599281 33 - TSS region transcription start site region 33555
Gm37380 3 69661766 to 69662162 396 + pseudogene predicted gene, 37380
Tssr33556 3 69673572 to 69673580 8 - TSS region transcription start site region 33556
Gm25621 3 69685467 to 69685580 113 + rRNA gene predicted gene, 25621
Rpl32-ps 3 69716941 to 69717444 503 - pseudogene ribosomal protein L32, pseudogene
Skull4 3 69718176 to 69718412 236 QTL skull morphology 4
D3Mit22 3 69718176 to 69718412 236 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 22
Tshp4 3 69718176 to 69718412 236 QTL tooth shape 4
Manln3 3 69718176 to 69718412 236 QTL mandible length 3
Cpgi13262 3 69721713 to 69722888 1175 CpG island CpG island 13262
Tssr29546 3 69721996 to 69722071 75 + TSS region transcription start site region 29546
Nmd3 3 69722055 to 69749047 26992 + protein coding gene NMD3 ribosome export adaptor
Tssr29547 3 69722089 to 69722101 12 + TSS region transcription start site region 29547
Tssr29548 3 69740163 to 69740167 4 + TSS region transcription start site region 29548
9530051E23Rik 3 69753113 to 69756372 3259 unclassified gene RIKEN cDNA 9530051E23 gene
Gm19055 3 69808464 to 69809024 560 - pseudogene predicted gene, 19055
Sptssb 3 69819538 to 69859894 40356 - protein coding gene serine palmitoyltransferase, small subunit B
Tssr33557 3 69858870 to 69858874 4 - TSS region transcription start site region 33557
Tssr903 3 69859855 to 69859864 9 - TSS region transcription start site region 903
Tssr33558 3 69859875 to 69859901 26 - TSS region transcription start site region 33558
Cpgi13263 3 69860207 to 69861421 1214 CpG island CpG island 13263
Tssr33559 3 69861374 to 69861395 21 - TSS region transcription start site region 33559
Gm35817 3 69882471 to 69884114 1643 + lncRNA gene predicted gene, 35817
D3Mit277 3 69903428 to 69903525 97 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 277
Gm17895 3 69954809 to 69955682 873 - pseudogene predicted gene, 17895
Gm23484 3 69962315 to 69962445 130 - snoRNA gene predicted gene, 23484
Tssr29549 3 69963152 to 69963160 8 + TSS region transcription start site region 29549
Gm37784 3 69963282 to 69963470 188 + pseudogene predicted gene, 37784
Otol1 3 70007613 to 70028708 21095 + protein coding gene otolin 1
Tssr29550 3 70007640 to 70007644 4 + TSS region transcription start site region 29550
Tssr29551 3 70007647 to 70007656 9 + TSS region transcription start site region 29551
Tssr29552 3 70007668 to 70007679 11 + TSS region transcription start site region 29552
Tssr29553 3 70007684 to 70007694 10 + TSS region transcription start site region 29553
Nhdlq17 3 70015850 to 70015850 0 QTL non-HDL QTL 17
Tssr904 3 70040495 to 70040498 3 + TSS region transcription start site region 904
Gm37681 3 70059745 to 70060471 726 + pseudogene predicted gene, 37681
Gm37585 3 70116253 to 70116532 279 - pseudogene predicted gene, 37585
Char4 3 100747974 to 69718176 -31029798 QTL P. chabaudi malaria resistance QTL 4