Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:68188809-69078832

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144 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Aod2 3 37125593 to 68809613 31684020 QTL autoimmune ovarian dysgenesis 2
Iqschfp 3 67892232 to 68626466 734234 + protein coding gene Iqcj and Schip1 fusion protein
Schip1 3 68064802 to 68626481 561679 + protein coding gene schwannomin interacting protein 1
Tssr29454 3 68282263 to 68282265 2 + TSS region transcription start site region 29454
Gm5848 3 68303774 to 68310361 6587 - pseudogene predicted pseudogene 5848
Gm10292 3 68333196 to 68333780 584 + pseudogene predicted gene 10292
Gm10723 3 68407783 to 68414700 6917 + unclassified gene predicted gene 10723
Tssr29455 3 68468162 to 68468209 47 + TSS region transcription start site region 29455
Tssr29456 3 68489575 to 68489579 4 + TSS region transcription start site region 29456
Tssr29457 3 68493245 to 68493270 25 + TSS region transcription start site region 29457
Cpgi13250 3 68493253 to 68495670 2417 CpG island CpG island 13250
Tssr33507 3 68494046 to 68494070 24 - TSS region transcription start site region 33507
Tssr898 3 68494203 to 68494232 29 + TSS region transcription start site region 898
Tssr29458 3 68494232 to 68494268 36 + TSS region transcription start site region 29458
Tssr29459 3 68494283 to 68494295 12 + TSS region transcription start site region 29459
Tssr29460 3 68496120 to 68496122 2 + TSS region transcription start site region 29460
Tssr29461 3 68506909 to 68506915 6 + TSS region transcription start site region 29461
Gm22073 3 68547520 to 68547708 188 - snRNA gene predicted gene, 22073
Cpgi13251 3 68572274 to 68572664 390 CpG island CpG island 13251
Tssr29462 3 68572381 to 68572392 11 + TSS region transcription start site region 29462
Tssr29463 3 68572394 to 68572420 26 + TSS region transcription start site region 29463
Tssr29464 3 68572426 to 68572437 11 + TSS region transcription start site region 29464
Tssr29465 3 68572464 to 68572475 11 + TSS region transcription start site region 29465
Tssr29466 3 68572508 to 68572515 7 + TSS region transcription start site region 29466
Tssr29467 3 68572535 to 68572540 5 + TSS region transcription start site region 29467
Tssr29468 3 68584103 to 68584125 22 + TSS region transcription start site region 29468
Tssr899 3 68584132 to 68584141 9 + TSS region transcription start site region 899
Tssr29469 3 68584154 to 68584181 27 + TSS region transcription start site region 29469
Tssr29470 3 68584184 to 68584207 23 + TSS region transcription start site region 29470
Tssr29471 3 68584212 to 68584292 80 + TSS region transcription start site region 29471
Tssr29472 3 68584310 to 68584313 3 + TSS region transcription start site region 29472
Tssr29473 3 68584336 to 68584343 7 + TSS region transcription start site region 29473
D3Mit355 3 68612537 to 68612640 103 DNA segment DNA Segment, Chr 3, Massachusetts Institute of Technology 355
Tssr29474 3 68618021 to 68618034 13 + TSS region transcription start site region 29474
Tssr29475 3 68618105 to 68618117 12 + TSS region transcription start site region 29475
Tssr29476 3 68620588 to 68620607 19 + TSS region transcription start site region 29476
Tssr29477 3 68626053 to 68626058 5 + TSS region transcription start site region 29477
Tssr33508 3 68633634 to 68633641 7 - TSS region transcription start site region 33508
Tssr29478 3 68633809 to 68633832 23 + TSS region transcription start site region 29478
Il12a 3 68690644 to 68698547 7903 + protein coding gene interleukin 12a
Cpgi13252 3 68691138 to 68691450 312 CpG island CpG island 13252
Tssr29479 3 68691329 to 68691363 34 + TSS region transcription start site region 29479
Tssr29480 3 68691367 to 68691370 3 + TSS region transcription start site region 29480
Tssr29481 3 68691372 to 68691411 39 + TSS region transcription start site region 29481
Tssr29482 3 68691430 to 68691438 8 + TSS region transcription start site region 29482
Tssr29483 3 68691496 to 68691511 15 + TSS region transcription start site region 29483
Tssr29484 3 68691627 to 68691650 23 + TSS region transcription start site region 29484
Tssr29485 3 68691924 to 68691935 11 + TSS region transcription start site region 29485
Tssr29486 3 68691945 to 68691957 12 + TSS region transcription start site region 29486
Tssr29487 3 68692055 to 68692069 14 + TSS region transcription start site region 29487
Tssr29488 3 68692073 to 68692087 14 + TSS region transcription start site region 29488
Tssr33509 3 68692204 to 68692213 9 - TSS region transcription start site region 33509
Tssr29489 3 68693693 to 68693704 11 + TSS region transcription start site region 29489
Tssr29490 3 68693739 to 68693751 12 + TSS region transcription start site region 29490
Tssr29491 3 68694030 to 68694047 17 + TSS region transcription start site region 29491
Tssr29492 3 68694078 to 68694089 11 + TSS region transcription start site region 29492
Tssr29493 3 68694095 to 68694104 9 + TSS region transcription start site region 29493
Tssr29494 3 68698019 to 68698036 17 + TSS region transcription start site region 29494
Cpgi13253 3 68720918 to 68721102 184 CpG island CpG island 13253
Gm10040 3 68733137 to 68738077 4940 + pseudogene predicted gene 10040
4930535E02Rik 3 68759906 to 68761433 1527 - lincRNA gene RIKEN cDNA 4930535E02 gene
Tssr33510 3 68761413 to 68761423 10 - TSS region transcription start site region 33510
Tssr29495 3 68761430 to 68761455 25 + TSS region transcription start site region 29495
Tssr29496 3 68761470 to 68761480 10 + TSS region transcription start site region 29496
Gm35584 3 68761495 to 68762667 1172 + lincRNA gene predicted gene, 35584
Tssr29497 3 68762046 to 68762081 35 + TSS region transcription start site region 29497
Tssr33511 3 68780424 to 68780434 10 - TSS region transcription start site region 33511
Tssr29498 3 68784352 to 68784392 40 + TSS region transcription start site region 29498
Tssr33512 3 68786854 to 68786857 3 - TSS region transcription start site region 33512
Tssr29499 3 68786998 to 68787044 46 + TSS region transcription start site region 29499
Tssr29500 3 68790709 to 68790720 11 + TSS region transcription start site region 29500
D3Mit154 3 68809469 to 68809613 144 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 154
Hivan1 3 68809613 to 7521114 -61288499 QTL HIV-associated nephropathy 1
Tssr900 3 68824892 to 68824893 1 - TSS region transcription start site region 900
Gm7270 3 68846079 to 68847403 1324 + pseudogene predicted gene 7270
Gm17641 3 68867917 to 68870266 2349 - protein coding gene predicted gene, 17641
Tssr29501 3 68868805 to 68868813 8 + TSS region transcription start site region 29501
Cpgi13254 3 68869078 to 68870992 1914 CpG island CpG island 13254
Tssr29502 3 68869307 to 68869322 15 + TSS region transcription start site region 29502
Tssr29503 3 68869337 to 68869399 62 + TSS region transcription start site region 29503
Tssr29504 3 68869563 to 68869589 26 + TSS region transcription start site region 29504
1110032F04Rik 3 68869586 to 68872163 2577 + protein coding gene RIKEN cDNA 1110032F04 gene
Tssr29505 3 68869646 to 68869659 13 + TSS region transcription start site region 29505
Ift80 3 68892499 to 69004570 112071 - protein coding gene intraflagellar transport 80
Tssr33513 3 68893077 to 68893083 6 - TSS region transcription start site region 33513
Gm20689 3 68900171 to 68900449 278 - pseudogene predicted gene 20689
Gm20690 3 68901830 to 68902144 314 + pseudogene predicted gene 20690
Gm18588 3 68902267 to 68902758 491 - pseudogene predicted gene, 18588
Tssr33514 3 68902776 to 68902797 21 - TSS region transcription start site region 33514
Gm20691 3 68903820 to 68904152 332 - pseudogene predicted gene 20691
Gm48183 3 68916499 to 68917323 824 - unclassified gene predicted gene, 48183
Tssr33515 3 68990973 to 68990976 3 - TSS region transcription start site region 33515
Tssr33516 3 69004365 to 69004378 13 - TSS region transcription start site region 33516
Tssr901 3 69004412 to 69004413 1 - TSS region transcription start site region 901
Cpgi13255 3 69004450 to 69006487 2037 CpG island CpG island 13255
Tssr33517 3 69004452 to 69004467 15 - TSS region transcription start site region 33517
Tssr33518 3 69004475 to 69004499 24 - TSS region transcription start site region 33518
Tssr33519 3 69004503 to 69004545 42 - TSS region transcription start site region 33519
Tssr33520 3 69004553 to 69004564 11 - TSS region transcription start site region 33520
Tssr33521 3 69004565 to 69004585 20 - TSS region transcription start site region 33521
Tssr29506 3 69004711 to 69004731 20 + TSS region transcription start site region 29506
Tssr29507 3 69004969 to 69005021 52 + TSS region transcription start site region 29507
Smc4 3 69004972 to 69034623 29651 + protein coding gene structural maintenance of chromosomes 4
Tssr29508 3 69005118 to 69005142 24 + TSS region transcription start site region 29508
Tssr29509 3 69005299 to 69005313 14 + TSS region transcription start site region 29509
Tssr29510 3 69005337 to 69005354 17 + TSS region transcription start site region 29510
Tssr29511 3 69005440 to 69005485 45 + TSS region transcription start site region 29511
Tssr29512 3 69005733 to 69005742 9 + TSS region transcription start site region 29512
Tssr29513 3 69005927 to 69005946 19 + TSS region transcription start site region 29513
Tssr29514 3 69006032 to 69006072 40 + TSS region transcription start site region 29514
Tssr33522 3 69006423 to 69006429 6 - TSS region transcription start site region 33522
Tssr29515 3 69009482 to 69009496 14 + TSS region transcription start site region 29515
Tssr29516 3 69009520 to 69009607 87 + TSS region transcription start site region 29516
Mirc10 3 69009772 to 69009996 224 complex/cluster/region microRNA cluster 10, including Mir15b through Mir16-2
Mir15b 3 69009772 to 69009835 63 + miRNA gene microRNA 15b
Mir16-2 3 69009902 to 69009996 94 + miRNA gene microRNA 16-2
Tssr29517 3 69009981 to 69009986 5 + TSS region transcription start site region 29517
Tssr29518 3 69016087 to 69016108 21 + TSS region transcription start site region 29518
Tssr29519 3 69016674 to 69016686 12 + TSS region transcription start site region 29519
Tssr29520 3 69016692 to 69016707 15 + TSS region transcription start site region 29520
Tssr29521 3 69019251 to 69019263 12 + TSS region transcription start site region 29521
Tssr29522 3 69024281 to 69024285 4 + TSS region transcription start site region 29522
Tssr29523 3 69026112 to 69026115 3 + TSS region transcription start site region 29523
Tssr29524 3 69027678 to 69027685 7 + TSS region transcription start site region 29524
Tssr29525 3 69028522 to 69028533 11 + TSS region transcription start site region 29525
Tssr29526 3 69029395 to 69029414 19 + TSS region transcription start site region 29526
Tssr29527 3 69029446 to 69029466 20 + TSS region transcription start site region 29527
Tssr29528 3 69030246 to 69030303 57 + TSS region transcription start site region 29528
Trim59 3 69035288 to 69044755 9467 - protein coding gene tripartite motif-containing 59
Cpgi13256 3 69044061 to 69045524 1463 CpG island CpG island 13256
Tssr33523 3 69044650 to 69044659 9 - TSS region transcription start site region 33523
Tssr33524 3 69044660 to 69044667 7 - TSS region transcription start site region 33524
Tssr33525 3 69044697 to 69044763 66 - TSS region transcription start site region 33525
Tssr33526 3 69044963 to 69044974 11 - TSS region transcription start site region 33526
Tssr33527 3 69044985 to 69044999 14 - TSS region transcription start site region 33527
Tssr29529 3 69045076 to 69045087 11 + TSS region transcription start site region 29529
Tssr29530 3 69045118 to 69045136 18 + TSS region transcription start site region 29530
Cpgi13257 3 69051524 to 69051978 454 CpG island CpG island 13257
9630025H16Rik 3 69060646 to 69065250 4604 + lncRNA gene RIKEN cDNA 9630025H16 gene
Tssr33528 3 69068465 to 69068481 16 - TSS region transcription start site region 33528
Tssr33529 3 69069619 to 69069667 48 - TSS region transcription start site region 33529
Tssr33530 3 69071547 to 69071551 4 - TSS region transcription start site region 33530
Kpna4 3 69072221 to 69127092 54871 - protein coding gene karyopherin (importin) alpha 4
Tssr33531 3 69073561 to 69073575 14 - TSS region transcription start site region 33531