Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:66974701-68055881

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74 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Shox2 3 66971727 to 66981771 10044 - protein coding gene short stature homeobox 2
Cpgi13240 3 66978173 to 66979254 1081 CpG island CpG island 13240
Cpgi13241 3 66980747 to 66981630 883 CpG island CpG island 13241
Tssr33492 3 66981259 to 66981277 18 - TSS region transcription start site region 33492
Tssr33493 3 66981279 to 66981304 25 - TSS region transcription start site region 33493
Tssr29428 3 66981352 to 66981407 55 + TSS region transcription start site region 29428
Rsrc1 3 66981398 to 67358403 377005 + protein coding gene arginine/serine-rich coiled-coil 1
Tssr33494 3 66981589 to 66981612 23 - TSS region transcription start site region 33494
Tssr33495 3 66981741 to 66981788 47 - TSS region transcription start site region 33495
Tssr33496 3 66981935 to 66981951 16 - TSS region transcription start site region 33496
Cpgi13242 3 66982272 to 66982832 560 CpG island CpG island 13242
Cpgi13243 3 66985503 to 66986255 752 CpG island CpG island 13243
Tssr29429 3 66985647 to 66985678 31 + TSS region transcription start site region 29429
Tssr29430 3 66985680 to 66985692 12 + TSS region transcription start site region 29430
Tssr29431 3 66985700 to 66985740 40 + TSS region transcription start site region 29431
Tssr29432 3 66985947 to 66985986 39 + TSS region transcription start site region 29432
Tssr897 3 67012212 to 67012214 2 + TSS region transcription start site region 897
D3Mit70 3 67017499 to 67017710 211 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 70
Gm22295 3 67055958 to 67056064 106 + snRNA gene predicted gene, 22295
Tssr29433 3 67092500 to 67092504 4 + TSS region transcription start site region 29433
Tssr29434 3 67092572 to 67092582 10 + TSS region transcription start site region 29434
Tssr29435 3 67159155 to 67159160 5 + TSS region transcription start site region 29435
Gm17402 3 67365461 to 67375163 9702 - protein coding gene predicted gene, 17402
Cpgi13244 3 67373929 to 67374710 781 CpG island CpG island 13244
Tssr29436 3 67374091 to 67374102 11 + TSS region transcription start site region 29436
Mlf1 3 67374097 to 67400000 25903 + protein coding gene myeloid leukemia factor 1
Tssr29437 3 67374116 to 67374154 38 + TSS region transcription start site region 29437
Tssr29438 3 67374173 to 67374185 12 + TSS region transcription start site region 29438
Cpgi13245 3 67429946 to 67430633 687 CpG island CpG island 13245
Tssr29439 3 67430101 to 67430184 83 + TSS region transcription start site region 29439
Gfm1 3 67430115 to 67475068 44953 + protein coding gene G elongation factor, mitochondrial 1
Lxn 3 67457999 to 67463907 5908 - protein coding gene latexin
Cpgi13246 3 67463577 to 67464145 568 CpG island CpG island 13246
Tssr33497 3 67463616 to 67463627 11 - TSS region transcription start site region 33497
Tssr33498 3 67463780 to 67463791 11 - TSS region transcription start site region 33498
Tssr33499 3 67463798 to 67463825 27 - TSS region transcription start site region 33499
Tssr33500 3 67463828 to 67463943 115 - TSS region transcription start site region 33500
Tssr33501 3 67464134 to 67464167 33 - TSS region transcription start site region 33501
Tssr29440 3 67472849 to 67472855 6 + TSS region transcription start site region 29440
Tssr29441 3 67473446 to 67473455 9 + TSS region transcription start site region 29441
Tssr29442 3 67473656 to 67473659 3 + TSS region transcription start site region 29442
Gm42568 3 67476978 to 67478818 1840 + unclassified gene predicted gene 42568
Rarres1 3 67478972 to 67515523 36551 - protein coding gene retinoic acid receptor responder (tazarotene induced) 1
Tssr29443 3 67504208 to 67504219 11 + TSS region transcription start site region 29443
Cpgi13247 3 67514701 to 67515881 1180 CpG island CpG island 13247
Tssr33502 3 67515468 to 67515484 16 - TSS region transcription start site region 33502
Tssr33503 3 67515487 to 67515502 15 - TSS region transcription start site region 33503
Tssr33504 3 67515626 to 67515654 28 - TSS region transcription start site region 33504
Tssr33505 3 67515663 to 67515700 37 - TSS region transcription start site region 33505
Gm40067 3 67515667 to 67519663 3996 + lncRNA gene predicted gene, 40067
Tssr33506 3 67515704 to 67515737 33 - TSS region transcription start site region 33506
Gm35299 3 67551329 to 67553425 2096 - lincRNA gene predicted gene, 35299
Cpgi13248 3 67557415 to 67557667 252 CpG island CpG island 13248
Tssr29444 3 67557523 to 67557534 11 + TSS region transcription start site region 29444
4930402C01Rik 3 67570565 to 67572821 2256 - lincRNA gene RIKEN cDNA 4930402C01 gene
Gm25919 3 67573160 to 67573291 131 - snoRNA gene predicted gene, 25919
Cpgi13249 3 67582453 to 67583250 797 CpG island CpG island 13249
Tssr29445 3 67582726 to 67582729 3 + TSS region transcription start site region 29445
Tssr29446 3 67582737 to 67582768 31 + TSS region transcription start site region 29446
Mfsd1 3 67582768 to 67604231 21463 + protein coding gene major facilitator superfamily domain containing 1
Tssr29447 3 67582770 to 67582816 46 + TSS region transcription start site region 29447
Tssr29448 3 67582878 to 67582898 20 + TSS region transcription start site region 29448
Tssr29449 3 67603204 to 67603216 12 + TSS region transcription start site region 29449
Gm8515 3 67607206 to 67607781 575 - pseudogene predicted gene 8515
Gm412 3 67619781 to 67620698 917 - pseudogene predicted gene 412
Gm37601 3 67684359 to 67684752 393 - pseudogene predicted gene, 37601
Gm18717 3 67742057 to 67743297 1240 - pseudogene predicted gene, 18717
Gm35407 3 67753600 to 67755654 2054 + lncRNA gene predicted gene, 35407
Gm40068 3 67755659 to 67766285 10626 + lncRNA gene predicted gene, 40068
Tssr29450 3 67892128 to 67892155 27 + TSS region transcription start site region 29450
Tssr29451 3 67892189 to 67892226 37 + TSS region transcription start site region 29451
Iqcj 3 67892220 to 68056593 164373 + protein coding gene IQ motif containing J
Iqschfp 3 67892232 to 68626466 734234 + protein coding gene Iqcj and Schip1 fusion protein
Tssr29452 3 68046838 to 68046841 3 + TSS region transcription start site region 29452