Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:66185115-68720068

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163 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Veph1 3 66053558 to 66296837 243279 - protein coding gene ventricular zone expressed PH domain-containing 1
Gm37330 3 66191093 to 66191245 152 - pseudogene predicted gene, 37330
Tssr33486 3 66193528 to 66193532 4 - TSS region transcription start site region 33486
Tssr29422 3 66219909 to 66219927 18 + TSS region transcription start site region 29422
Ptx3 3 66219910 to 66225805 5895 + protein coding gene pentraxin related gene
Tssr29423 3 66219942 to 66219951 9 + TSS region transcription start site region 29423
Tssr29424 3 66219960 to 66219965 5 + TSS region transcription start site region 29424
Tssr29425 3 66219969 to 66219988 19 + TSS region transcription start site region 29425
Cpgi13236 3 66220497 to 66221226 729 CpG island CpG island 13236
Tssr29426 3 66225518 to 66225520 2 + TSS region transcription start site region 29426
Tssr33487 3 66253682 to 66253694 12 - TSS region transcription start site region 33487
Cpgi13237 3 66292441 to 66292705 264 CpG island CpG island 13237
Tssr33488 3 66296707 to 66296762 55 - TSS region transcription start site region 33488
Tssr33489 3 66296807 to 66296822 15 - TSS region transcription start site region 33489
Tssr33490 3 66296918 to 66296930 12 - TSS region transcription start site region 33490
Gm50014 3 66364539 to 66364626 87 + pseudogene predicted gene, 50014
Gm35184 3 66374299 to 66388105 13806 + lncRNA gene predicted gene, 35184
Gm35236 3 66400407 to 66406066 5659 + lncRNA gene predicted gene, 35236
Tssr29427 3 66401147 to 66401161 14 + TSS region transcription start site region 29427
Ath23 3 66450160 to 66450160 0 QTL atherosclerosis 23
Gm17952 3 66562805 to 66563551 746 - pseudogene predicted gene, 17952
D3Nds29 3 66587578 to 66587695 117 DNA segment DNA segment, Chr 3, Nuffield Department of Surgery 29
D3Mit241 3 66587584 to 66587697 113 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 241
Susp 3 66587584 to 66587697 113 QTL suppressor of superoxide production
Hdl5 3 66587584 to 66587697 113 QTL HDL level 5
Gm6555 3 66882350 to 66883138 788 + pseudogene predicted gene 6555
D3Mit71 3 66891236 to 66891364 128 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 71
Gm38356 3 66907359 to 66907766 407 - pseudogene predicted gene, 38356
Gm43516 3 66953541 to 66953862 321 + pseudogene predicted gene 43516
Cpgi13238 3 66970441 to 66970958 517 CpG island CpG island 13238
Shox2 3 66971727 to 66981771 10044 - protein coding gene short stature homeobox 2
Cpgi13239 3 66973300 to 66974263 963 CpG island CpG island 13239
Tssr33491 3 66973780 to 66973827 47 - TSS region transcription start site region 33491
Cpgi13240 3 66978173 to 66979254 1081 CpG island CpG island 13240
Cpgi13241 3 66980747 to 66981630 883 CpG island CpG island 13241
Tssr33492 3 66981259 to 66981277 18 - TSS region transcription start site region 33492
Tssr33493 3 66981279 to 66981304 25 - TSS region transcription start site region 33493
Tssr29428 3 66981352 to 66981407 55 + TSS region transcription start site region 29428
Rsrc1 3 66981398 to 67358403 377005 + protein coding gene arginine/serine-rich coiled-coil 1
Tssr33494 3 66981589 to 66981612 23 - TSS region transcription start site region 33494
Tssr33495 3 66981741 to 66981788 47 - TSS region transcription start site region 33495
Tssr33496 3 66981935 to 66981951 16 - TSS region transcription start site region 33496
Cpgi13242 3 66982272 to 66982832 560 CpG island CpG island 13242
Cpgi13243 3 66985503 to 66986255 752 CpG island CpG island 13243
Tssr29429 3 66985647 to 66985678 31 + TSS region transcription start site region 29429
Tssr29430 3 66985680 to 66985692 12 + TSS region transcription start site region 29430
Tssr29431 3 66985700 to 66985740 40 + TSS region transcription start site region 29431
Tssr29432 3 66985947 to 66985986 39 + TSS region transcription start site region 29432
Tssr897 3 67012212 to 67012214 2 + TSS region transcription start site region 897
D3Mit70 3 67017499 to 67017710 211 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 70
Gm22295 3 67055958 to 67056064 106 + snRNA gene predicted gene, 22295
Tssr29433 3 67092500 to 67092504 4 + TSS region transcription start site region 29433
Tssr29434 3 67092572 to 67092582 10 + TSS region transcription start site region 29434
Tssr29435 3 67159155 to 67159160 5 + TSS region transcription start site region 29435
Gm17402 3 67365461 to 67375163 9702 - protein coding gene predicted gene, 17402
Cpgi13244 3 67373929 to 67374710 781 CpG island CpG island 13244
Tssr29436 3 67374091 to 67374102 11 + TSS region transcription start site region 29436
Mlf1 3 67374097 to 67400000 25903 + protein coding gene myeloid leukemia factor 1
Tssr29437 3 67374116 to 67374154 38 + TSS region transcription start site region 29437
Tssr29438 3 67374173 to 67374185 12 + TSS region transcription start site region 29438
Cpgi13245 3 67429946 to 67430633 687 CpG island CpG island 13245
Tssr29439 3 67430101 to 67430184 83 + TSS region transcription start site region 29439
Gfm1 3 67430115 to 67475068 44953 + protein coding gene G elongation factor, mitochondrial 1
Lxn 3 67457999 to 67463907 5908 - protein coding gene latexin
Cpgi13246 3 67463577 to 67464145 568 CpG island CpG island 13246
Tssr33497 3 67463616 to 67463627 11 - TSS region transcription start site region 33497
Tssr33498 3 67463780 to 67463791 11 - TSS region transcription start site region 33498
Tssr33499 3 67463798 to 67463825 27 - TSS region transcription start site region 33499
Tssr33500 3 67463828 to 67463943 115 - TSS region transcription start site region 33500
Tssr33501 3 67464134 to 67464167 33 - TSS region transcription start site region 33501
Tssr29440 3 67472849 to 67472855 6 + TSS region transcription start site region 29440
Tssr29441 3 67473446 to 67473455 9 + TSS region transcription start site region 29441
Tssr29442 3 67473656 to 67473659 3 + TSS region transcription start site region 29442
Gm42568 3 67476978 to 67478818 1840 + unclassified gene predicted gene 42568
Rarres1 3 67478972 to 67515523 36551 - protein coding gene retinoic acid receptor responder (tazarotene induced) 1
Tssr29443 3 67504208 to 67504219 11 + TSS region transcription start site region 29443
Cpgi13247 3 67514701 to 67515881 1180 CpG island CpG island 13247
Tssr33502 3 67515468 to 67515484 16 - TSS region transcription start site region 33502
Tssr33503 3 67515487 to 67515502 15 - TSS region transcription start site region 33503
Tssr33504 3 67515626 to 67515654 28 - TSS region transcription start site region 33504
Tssr33505 3 67515663 to 67515700 37 - TSS region transcription start site region 33505
Gm40067 3 67515667 to 67519663 3996 + lncRNA gene predicted gene, 40067
Tssr33506 3 67515704 to 67515737 33 - TSS region transcription start site region 33506
Gm35299 3 67551329 to 67553425 2096 - lincRNA gene predicted gene, 35299
Cpgi13248 3 67557415 to 67557667 252 CpG island CpG island 13248
Tssr29444 3 67557523 to 67557534 11 + TSS region transcription start site region 29444
4930402C01Rik 3 67570565 to 67572821 2256 - lincRNA gene RIKEN cDNA 4930402C01 gene
Gm25919 3 67573160 to 67573291 131 - snoRNA gene predicted gene, 25919
Cpgi13249 3 67582453 to 67583250 797 CpG island CpG island 13249
Tssr29445 3 67582726 to 67582729 3 + TSS region transcription start site region 29445
Tssr29446 3 67582737 to 67582768 31 + TSS region transcription start site region 29446
Mfsd1 3 67582768 to 67604231 21463 + protein coding gene major facilitator superfamily domain containing 1
Tssr29447 3 67582770 to 67582816 46 + TSS region transcription start site region 29447
Tssr29448 3 67582878 to 67582898 20 + TSS region transcription start site region 29448
Tssr29449 3 67603204 to 67603216 12 + TSS region transcription start site region 29449
Gm8515 3 67607206 to 67607781 575 - pseudogene predicted gene 8515
Gm412 3 67619781 to 67620698 917 - pseudogene predicted gene 412
Gm37601 3 67684359 to 67684752 393 - pseudogene predicted gene, 37601
Gm18717 3 67742057 to 67743297 1240 - pseudogene predicted gene, 18717
Gm35407 3 67753600 to 67755654 2054 + lncRNA gene predicted gene, 35407
Gm40068 3 67755659 to 67766285 10626 + lncRNA gene predicted gene, 40068
Tssr29450 3 67892128 to 67892155 27 + TSS region transcription start site region 29450
Tssr29451 3 67892189 to 67892226 37 + TSS region transcription start site region 29451
Iqcj 3 67892220 to 68056593 164373 + protein coding gene IQ motif containing J
Iqschfp 3 67892232 to 68626466 734234 + protein coding gene Iqcj and Schip1 fusion protein
Tssr29452 3 68046838 to 68046841 3 + TSS region transcription start site region 29452
Tssr29453 3 68064398 to 68064407 9 + TSS region transcription start site region 29453
Schip1 3 68064802 to 68626481 561679 + protein coding gene schwannomin interacting protein 1
Tssr29454 3 68282263 to 68282265 2 + TSS region transcription start site region 29454
Gm5848 3 68303774 to 68310361 6587 - pseudogene predicted pseudogene 5848
Gm10292 3 68333196 to 68333780 584 + pseudogene predicted gene 10292
Gm10723 3 68407783 to 68414700 6917 + unclassified gene predicted gene 10723
Tssr29455 3 68468162 to 68468209 47 + TSS region transcription start site region 29455
Tssr29456 3 68489575 to 68489579 4 + TSS region transcription start site region 29456
Tssr29457 3 68493245 to 68493270 25 + TSS region transcription start site region 29457
Cpgi13250 3 68493253 to 68495670 2417 CpG island CpG island 13250
Tssr33507 3 68494046 to 68494070 24 - TSS region transcription start site region 33507
Tssr898 3 68494203 to 68494232 29 + TSS region transcription start site region 898
Tssr29458 3 68494232 to 68494268 36 + TSS region transcription start site region 29458
Tssr29459 3 68494283 to 68494295 12 + TSS region transcription start site region 29459
Tssr29460 3 68496120 to 68496122 2 + TSS region transcription start site region 29460
Tssr29461 3 68506909 to 68506915 6 + TSS region transcription start site region 29461
Gm22073 3 68547520 to 68547708 188 - snRNA gene predicted gene, 22073
Cpgi13251 3 68572274 to 68572664 390 CpG island CpG island 13251
Tssr29462 3 68572381 to 68572392 11 + TSS region transcription start site region 29462
Tssr29463 3 68572394 to 68572420 26 + TSS region transcription start site region 29463
Tssr29464 3 68572426 to 68572437 11 + TSS region transcription start site region 29464
Tssr29465 3 68572464 to 68572475 11 + TSS region transcription start site region 29465
Tssr29466 3 68572508 to 68572515 7 + TSS region transcription start site region 29466
Tssr29467 3 68572535 to 68572540 5 + TSS region transcription start site region 29467
Tssr29468 3 68584103 to 68584125 22 + TSS region transcription start site region 29468
Tssr899 3 68584132 to 68584141 9 + TSS region transcription start site region 899
Tssr29469 3 68584154 to 68584181 27 + TSS region transcription start site region 29469
Tssr29470 3 68584184 to 68584207 23 + TSS region transcription start site region 29470
Tssr29471 3 68584212 to 68584292 80 + TSS region transcription start site region 29471
Tssr29472 3 68584310 to 68584313 3 + TSS region transcription start site region 29472
Tssr29473 3 68584336 to 68584343 7 + TSS region transcription start site region 29473
D3Mit355 3 68612537 to 68612640 103 DNA segment DNA Segment, Chr 3, Massachusetts Institute of Technology 355
Tssr29474 3 68618021 to 68618034 13 + TSS region transcription start site region 29474
Tssr29475 3 68618105 to 68618117 12 + TSS region transcription start site region 29475
Tssr29476 3 68620588 to 68620607 19 + TSS region transcription start site region 29476
Tssr29477 3 68626053 to 68626058 5 + TSS region transcription start site region 29477
Tssr33508 3 68633634 to 68633641 7 - TSS region transcription start site region 33508
Tssr29478 3 68633809 to 68633832 23 + TSS region transcription start site region 29478
Il12a 3 68690644 to 68698547 7903 + protein coding gene interleukin 12a
Cpgi13252 3 68691138 to 68691450 312 CpG island CpG island 13252
Tssr29479 3 68691329 to 68691363 34 + TSS region transcription start site region 29479
Tssr29480 3 68691367 to 68691370 3 + TSS region transcription start site region 29480
Tssr29481 3 68691372 to 68691411 39 + TSS region transcription start site region 29481
Tssr29482 3 68691430 to 68691438 8 + TSS region transcription start site region 29482
Tssr29483 3 68691496 to 68691511 15 + TSS region transcription start site region 29483
Tssr29484 3 68691627 to 68691650 23 + TSS region transcription start site region 29484
Tssr29485 3 68691924 to 68691935 11 + TSS region transcription start site region 29485
Tssr29486 3 68691945 to 68691957 12 + TSS region transcription start site region 29486
Tssr29487 3 68692055 to 68692069 14 + TSS region transcription start site region 29487
Tssr29488 3 68692073 to 68692087 14 + TSS region transcription start site region 29488
Tssr33509 3 68692204 to 68692213 9 - TSS region transcription start site region 33509
Tssr29489 3 68693693 to 68693704 11 + TSS region transcription start site region 29489
Tssr29490 3 68693739 to 68693751 12 + TSS region transcription start site region 29490
Tssr29491 3 68694030 to 68694047 17 + TSS region transcription start site region 29491
Tssr29492 3 68694078 to 68694089 11 + TSS region transcription start site region 29492
Tssr29493 3 68694095 to 68694104 9 + TSS region transcription start site region 29493
Tssr29494 3 68698019 to 68698036 17 + TSS region transcription start site region 29494