Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:66157578-67017695

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50 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Veph1 3 66053558 to 66296837 243279 - protein coding gene ventricular zone expressed PH domain-containing 1
Gm37330 3 66191093 to 66191245 152 - pseudogene predicted gene, 37330
Tssr33486 3 66193528 to 66193532 4 - TSS region transcription start site region 33486
Tssr29422 3 66219909 to 66219927 18 + TSS region transcription start site region 29422
Ptx3 3 66219910 to 66225805 5895 + protein coding gene pentraxin related gene
Tssr29423 3 66219942 to 66219951 9 + TSS region transcription start site region 29423
Tssr29424 3 66219960 to 66219965 5 + TSS region transcription start site region 29424
Tssr29425 3 66219969 to 66219988 19 + TSS region transcription start site region 29425
Cpgi13236 3 66220497 to 66221226 729 CpG island CpG island 13236
Tssr29426 3 66225518 to 66225520 2 + TSS region transcription start site region 29426
Tssr33487 3 66253682 to 66253694 12 - TSS region transcription start site region 33487
Cpgi13237 3 66292441 to 66292705 264 CpG island CpG island 13237
Tssr33488 3 66296707 to 66296762 55 - TSS region transcription start site region 33488
Tssr33489 3 66296807 to 66296822 15 - TSS region transcription start site region 33489
Tssr33490 3 66296918 to 66296930 12 - TSS region transcription start site region 33490
Gm50014 3 66364539 to 66364626 87 + pseudogene predicted gene, 50014
Gm35184 3 66374299 to 66388105 13806 + lncRNA gene predicted gene, 35184
Gm35236 3 66400407 to 66406066 5659 + lncRNA gene predicted gene, 35236
Tssr29427 3 66401147 to 66401161 14 + TSS region transcription start site region 29427
Ath23 3 66450160 to 66450160 0 QTL atherosclerosis 23
Gm17952 3 66562805 to 66563551 746 - pseudogene predicted gene, 17952
D3Nds29 3 66587578 to 66587695 117 DNA segment DNA segment, Chr 3, Nuffield Department of Surgery 29
D3Mit241 3 66587584 to 66587697 113 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 241
Hdl5 3 66587584 to 66587697 113 QTL HDL level 5
Susp 3 66587584 to 66587697 113 QTL suppressor of superoxide production
Gm6555 3 66882350 to 66883138 788 + pseudogene predicted gene 6555
D3Mit71 3 66891236 to 66891364 128 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 71
Gm38356 3 66907359 to 66907766 407 - pseudogene predicted gene, 38356
Gm43516 3 66953541 to 66953862 321 + pseudogene predicted gene 43516
Cpgi13238 3 66970441 to 66970958 517 CpG island CpG island 13238
Shox2 3 66971727 to 66981771 10044 - protein coding gene short stature homeobox 2
Cpgi13239 3 66973300 to 66974263 963 CpG island CpG island 13239
Tssr33491 3 66973780 to 66973827 47 - TSS region transcription start site region 33491
Cpgi13240 3 66978173 to 66979254 1081 CpG island CpG island 13240
Cpgi13241 3 66980747 to 66981630 883 CpG island CpG island 13241
Tssr33492 3 66981259 to 66981277 18 - TSS region transcription start site region 33492
Tssr33493 3 66981279 to 66981304 25 - TSS region transcription start site region 33493
Tssr29428 3 66981352 to 66981407 55 + TSS region transcription start site region 29428
Rsrc1 3 66981398 to 67358403 377005 + protein coding gene arginine/serine-rich coiled-coil 1
Tssr33494 3 66981589 to 66981612 23 - TSS region transcription start site region 33494
Tssr33495 3 66981741 to 66981788 47 - TSS region transcription start site region 33495
Tssr33496 3 66981935 to 66981951 16 - TSS region transcription start site region 33496
Cpgi13242 3 66982272 to 66982832 560 CpG island CpG island 13242
Cpgi13243 3 66985503 to 66986255 752 CpG island CpG island 13243
Tssr29429 3 66985647 to 66985678 31 + TSS region transcription start site region 29429
Tssr29430 3 66985680 to 66985692 12 + TSS region transcription start site region 29430
Tssr29431 3 66985700 to 66985740 40 + TSS region transcription start site region 29431
Tssr29432 3 66985947 to 66985986 39 + TSS region transcription start site region 29432
Tssr897 3 67012212 to 67012214 2 + TSS region transcription start site region 897
D3Mit70 3 67017499 to 67017710 211 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 70