Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:65117483-65939414

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74 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm38048 3 64949223 to 65223701 274478 + sense overlapping lncRNA gene predicted gene, 38048
Kcnab1 3 65109384 to 65378223 268839 + protein coding gene potassium voltage-gated channel, shaker-related subfamily, beta member 1
A330015K06Rik 3 65133060 to 65302685 169625 - antisense lncRNA gene RIKEN cDNA A330015K06 gene
Tssr29398 3 65188112 to 65188143 31 + TSS region transcription start site region 29398
Tssr33453 3 65200565 to 65200566 1 - TSS region transcription start site region 33453
Tssr33454 3 65295893 to 65295905 12 - TSS region transcription start site region 33454
Tssr33455 3 65295907 to 65295918 11 - TSS region transcription start site region 33455
Tssr33456 3 65302651 to 65302662 11 - TSS region transcription start site region 33456
Tssr33457 3 65302755 to 65302765 10 - TSS region transcription start site region 33457
A730090N16Rik 3 65324776 to 65349429 24653 - antisense lncRNA gene RIKEN cDNA A730090N16 gene
Tssr29399 3 65339539 to 65339542 3 + TSS region transcription start site region 29399
Ssr3 3 65379657 to 65392553 12896 - protein coding gene signal sequence receptor, gamma
Tssr33458 3 65380307 to 65380321 14 - TSS region transcription start site region 33458
Tssr33459 3 65380782 to 65380793 11 - TSS region transcription start site region 33459
Tssr33460 3 65380931 to 65380948 17 - TSS region transcription start site region 33460
Tssr33461 3 65381040 to 65381057 17 - TSS region transcription start site region 33461
Tssr33462 3 65381276 to 65381289 13 - TSS region transcription start site region 33462
Tssr33463 3 65381396 to 65381400 4 - TSS region transcription start site region 33463
Tssr893 3 65390981 to 65390986 5 - TSS region transcription start site region 893
Cpgi13227 3 65392001 to 65392926 925 CpG island CpG island 13227
Tssr33464 3 65392546 to 65392562 16 - TSS region transcription start site region 33464
Tssr33465 3 65392579 to 65392595 16 - TSS region transcription start site region 33465
Cpgi13228 3 65393300 to 65393474 174 CpG island CpG island 13228
Gm5540 3 65393337 to 65395184 1847 + pseudogene predicted pseudogene 5540
Cpgi13229 3 65394800 to 65394959 159 CpG island CpG island 13229
Gm34576 3 65449410 to 65479809 30399 + lncRNA gene predicted gene, 34576
Tssr29400 3 65449534 to 65449539 5 + TSS region transcription start site region 29400
Tssr29401 3 65449543 to 65449553 10 + TSS region transcription start site region 29401
Tssr894 3 65473350 to 65473351 1 + TSS region transcription start site region 894
Gm34780 3 65494087 to 65495035 948 - lncRNA gene predicted gene, 34780
Gm40066 3 65495168 to 65517292 22124 + lncRNA gene predicted gene, 40066
Gm37009 3 65506277 to 65506637 360 - pseudogene predicted gene, 37009
Gm38503 3 65506457 to 65520039 13582 - lncRNA gene predicted gene, 38503
Tssr895 3 65515499 to 65515501 2 + TSS region transcription start site region 895
Tssr29402 3 65516121 to 65516136 15 + TSS region transcription start site region 29402
Gm22279 3 65525701 to 65525793 92 + snRNA gene predicted gene, 22279
4931440P22Rik 3 65527483 to 65529414 1931 - lncRNA gene RIKEN cDNA 4931440P22 gene
Cpgi13230 3 65527655 to 65529797 2142 CpG island CpG island 13230
Tssr29403 3 65527801 to 65527844 43 + TSS region transcription start site region 29403
Tssr29404 3 65528001 to 65528021 20 + TSS region transcription start site region 29404
Tssr29405 3 65528404 to 65528431 27 + TSS region transcription start site region 29405
Tssr29406 3 65528434 to 65528454 20 + TSS region transcription start site region 29406
Tiparp 3 65528447 to 65555518 27071 + protein coding gene TCDD-inducible poly(ADP-ribose) polymerase
Tssr29407 3 65528457 to 65528471 14 + TSS region transcription start site region 29407
Tssr33466 3 65529355 to 65529384 29 - TSS region transcription start site region 33466
Tssr29408 3 65531246 to 65531260 14 + TSS region transcription start site region 29408
Tssr29409 3 65531665 to 65531695 30 + TSS region transcription start site region 29409
Gm34924 3 65575219 to 65580850 5631 - lncRNA gene predicted gene, 34924
Cpgi13231 3 65586435 to 65586699 264 CpG island CpG island 13231
Tssr896 3 65613493 to 65613494 1 + TSS region transcription start site region 896
Gm5847 3 65613589 to 65615183 1594 + pseudogene predicted gene 5847
Gm38233 3 65615368 to 65616174 806 - pseudogene predicted gene, 38233
Tssr33467 3 65639278 to 65639303 25 - TSS region transcription start site region 33467
Cpgi13232 3 65658800 to 65659804 1004 CpG island CpG island 13232
Tssr33468 3 65658908 to 65658947 39 - TSS region transcription start site region 33468
Tssr29410 3 65659219 to 65659242 23 + TSS region transcription start site region 29410
Mir8120 3 65659288 to 65659426 138 + miRNA gene microRNA 8120
Cpgi13233 3 65665884 to 65666759 875 CpG island CpG island 13233
Tssr29411 3 65666223 to 65666259 36 + TSS region transcription start site region 29411
Lekr1 3 65666228 to 65831159 164931 + protein coding gene leucine, glutamate and lysine rich 1
Tssr29412 3 65666260 to 65666293 33 + TSS region transcription start site region 29412
Gm37776 3 65678386 to 65680882 2496 + unclassified gene predicted gene, 37776
Tssr29413 3 65678397 to 65678403 6 + TSS region transcription start site region 29413
Tssr29414 3 65703558 to 65703562 4 + TSS region transcription start site region 29414
Gm25755 3 65771511 to 65771617 106 - snRNA gene predicted gene, 25755
Tssr29415 3 65806606 to 65806611 5 + TSS region transcription start site region 29415
Gm37359 3 65829116 to 65872281 43165 - antisense lncRNA gene predicted gene, 37359
Gm37131 3 65863269 to 65864829 1560 - unclassified gene predicted gene, 37131
Tssr33469 3 65922593 to 65922595 2 - TSS region transcription start site region 33469
Tssr33470 3 65925909 to 65925948 39 - TSS region transcription start site region 33470
Gm35039 3 65926103 to 65928278 2175 - lncRNA gene predicted gene, 35039
Tssr33471 3 65929355 to 65929377 22 - TSS region transcription start site region 33471
Tssr33472 3 65929415 to 65929442 27 - TSS region transcription start site region 33472
Gm37037 3 65933485 to 65933908 423 - pseudogene predicted gene, 37037