Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:64870909-66980948

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161 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm25222 3 64894471 to 64894596 125 - snoRNA gene predicted gene, 25222
Vmn2r-ps13 3 64899157 to 64899762 605 + pseudogene vomeronasal 2, receptor, pseudogene 13
Tssr29384 3 64949211 to 64949219 8 + TSS region transcription start site region 29384
Gm38048 3 64949223 to 65223701 274478 + sense overlapping lncRNA gene predicted gene, 38048
Tssr29385 3 64949229 to 64949243 14 + TSS region transcription start site region 29385
Tssr29386 3 64949290 to 64949295 5 + TSS region transcription start site region 29386
Cpgi13224 3 64949388 to 64949679 291 CpG island CpG island 13224
Tssr29387 3 64977483 to 64977496 13 + TSS region transcription start site region 29387
Tssr29388 3 64977531 to 64977546 15 + TSS region transcription start site region 29388
Tssr29389 3 64977586 to 64977597 11 + TSS region transcription start site region 29389
Tssr892 3 65108899 to 65108911 12 + TSS region transcription start site region 892
Tssr29390 3 65108968 to 65108987 19 + TSS region transcription start site region 29390
Tssr29391 3 65108996 to 65109037 41 + TSS region transcription start site region 29391
Tssr29392 3 65109043 to 65109089 46 + TSS region transcription start site region 29392
Cpgi13225 3 65109152 to 65109373 221 CpG island CpG island 13225
Tssr29393 3 65109269 to 65109287 18 + TSS region transcription start site region 29393
Tssr29394 3 65109329 to 65109340 11 + TSS region transcription start site region 29394
Tssr29395 3 65109343 to 65109420 77 + TSS region transcription start site region 29395
Kcnab1 3 65109384 to 65378223 268839 + protein coding gene potassium voltage-gated channel, shaker-related subfamily, beta member 1
Tssr29396 3 65109471 to 65109486 15 + TSS region transcription start site region 29396
Tssr29397 3 65109499 to 65109534 35 + TSS region transcription start site region 29397
Cpgi13226 3 65109794 to 65109992 198 CpG island CpG island 13226
A330015K06Rik 3 65133060 to 65302685 169625 - antisense lncRNA gene RIKEN cDNA A330015K06 gene
Tssr29398 3 65188112 to 65188143 31 + TSS region transcription start site region 29398
Tssr33453 3 65200565 to 65200566 1 - TSS region transcription start site region 33453
Tssr33454 3 65295893 to 65295905 12 - TSS region transcription start site region 33454
Tssr33455 3 65295907 to 65295918 11 - TSS region transcription start site region 33455
Tssr33456 3 65302651 to 65302662 11 - TSS region transcription start site region 33456
Tssr33457 3 65302755 to 65302765 10 - TSS region transcription start site region 33457
A730090N16Rik 3 65324776 to 65349429 24653 - antisense lncRNA gene RIKEN cDNA A730090N16 gene
Tssr29399 3 65339539 to 65339542 3 + TSS region transcription start site region 29399
Ssr3 3 65379657 to 65392553 12896 - protein coding gene signal sequence receptor, gamma
Tssr33458 3 65380307 to 65380321 14 - TSS region transcription start site region 33458
Tssr33459 3 65380782 to 65380793 11 - TSS region transcription start site region 33459
Tssr33460 3 65380931 to 65380948 17 - TSS region transcription start site region 33460
Tssr33461 3 65381040 to 65381057 17 - TSS region transcription start site region 33461
Tssr33462 3 65381276 to 65381289 13 - TSS region transcription start site region 33462
Tssr33463 3 65381396 to 65381400 4 - TSS region transcription start site region 33463
Tssr893 3 65390981 to 65390986 5 - TSS region transcription start site region 893
Cpgi13227 3 65392001 to 65392926 925 CpG island CpG island 13227
Tssr33464 3 65392546 to 65392562 16 - TSS region transcription start site region 33464
Tssr33465 3 65392579 to 65392595 16 - TSS region transcription start site region 33465
Cpgi13228 3 65393300 to 65393474 174 CpG island CpG island 13228
Gm5540 3 65393337 to 65395184 1847 + pseudogene predicted pseudogene 5540
Cpgi13229 3 65394800 to 65394959 159 CpG island CpG island 13229
Gm34576 3 65449410 to 65479809 30399 + lncRNA gene predicted gene, 34576
Tssr29400 3 65449534 to 65449539 5 + TSS region transcription start site region 29400
Tssr29401 3 65449543 to 65449553 10 + TSS region transcription start site region 29401
Tssr894 3 65473350 to 65473351 1 + TSS region transcription start site region 894
Gm34780 3 65494087 to 65495035 948 - lncRNA gene predicted gene, 34780
Gm40066 3 65495168 to 65517292 22124 + lncRNA gene predicted gene, 40066
Gm37009 3 65506277 to 65506637 360 - pseudogene predicted gene, 37009
Gm38503 3 65506457 to 65520039 13582 - lncRNA gene predicted gene, 38503
Tssr895 3 65515499 to 65515501 2 + TSS region transcription start site region 895
Tssr29402 3 65516121 to 65516136 15 + TSS region transcription start site region 29402
Gm22279 3 65525701 to 65525793 92 + snRNA gene predicted gene, 22279
4931440P22Rik 3 65527483 to 65529414 1931 - lncRNA gene RIKEN cDNA 4931440P22 gene
Cpgi13230 3 65527655 to 65529797 2142 CpG island CpG island 13230
Tssr29403 3 65527801 to 65527844 43 + TSS region transcription start site region 29403
Tssr29404 3 65528001 to 65528021 20 + TSS region transcription start site region 29404
Tssr29405 3 65528404 to 65528431 27 + TSS region transcription start site region 29405
Tssr29406 3 65528434 to 65528454 20 + TSS region transcription start site region 29406
Tiparp 3 65528447 to 65555518 27071 + protein coding gene TCDD-inducible poly(ADP-ribose) polymerase
Tssr29407 3 65528457 to 65528471 14 + TSS region transcription start site region 29407
Tssr33466 3 65529355 to 65529384 29 - TSS region transcription start site region 33466
Tssr29408 3 65531246 to 65531260 14 + TSS region transcription start site region 29408
Tssr29409 3 65531665 to 65531695 30 + TSS region transcription start site region 29409
Gm34924 3 65575219 to 65580850 5631 - lncRNA gene predicted gene, 34924
Cpgi13231 3 65586435 to 65586699 264 CpG island CpG island 13231
Tssr896 3 65613493 to 65613494 1 + TSS region transcription start site region 896
Gm5847 3 65613589 to 65615183 1594 + pseudogene predicted gene 5847
Gm38233 3 65615368 to 65616174 806 - pseudogene predicted gene, 38233
Tssr33467 3 65639278 to 65639303 25 - TSS region transcription start site region 33467
Cpgi13232 3 65658800 to 65659804 1004 CpG island CpG island 13232
Tssr33468 3 65658908 to 65658947 39 - TSS region transcription start site region 33468
Tssr29410 3 65659219 to 65659242 23 + TSS region transcription start site region 29410
Mir8120 3 65659288 to 65659426 138 + miRNA gene microRNA 8120
Cpgi13233 3 65665884 to 65666759 875 CpG island CpG island 13233
Tssr29411 3 65666223 to 65666259 36 + TSS region transcription start site region 29411
Lekr1 3 65666228 to 65831159 164931 + protein coding gene leucine, glutamate and lysine rich 1
Tssr29412 3 65666260 to 65666293 33 + TSS region transcription start site region 29412
Gm37776 3 65678386 to 65680882 2496 + unclassified gene predicted gene, 37776
Tssr29413 3 65678397 to 65678403 6 + TSS region transcription start site region 29413
Tssr29414 3 65703558 to 65703562 4 + TSS region transcription start site region 29414
Gm25755 3 65771511 to 65771617 106 - snRNA gene predicted gene, 25755
Tssr29415 3 65806606 to 65806611 5 + TSS region transcription start site region 29415
Gm37359 3 65829116 to 65872281 43165 - antisense lncRNA gene predicted gene, 37359
Gm37131 3 65863269 to 65864829 1560 - unclassified gene predicted gene, 37131
Tssr33469 3 65922593 to 65922595 2 - TSS region transcription start site region 33469
Tssr33470 3 65925909 to 65925948 39 - TSS region transcription start site region 33470
Gm35039 3 65926103 to 65928278 2175 - lncRNA gene predicted gene, 35039
Tssr33471 3 65929355 to 65929377 22 - TSS region transcription start site region 33471
Tssr33472 3 65929415 to 65929442 27 - TSS region transcription start site region 33472
Gm37037 3 65933485 to 65933908 423 - pseudogene predicted gene, 37037
Tssr33473 3 65945129 to 65945138 9 - TSS region transcription start site region 33473
Ccnl1 3 65946151 to 65958249 12098 - protein coding gene cyclin L1
Cpgi13234 3 65957231 to 65958732 1501 CpG island CpG island 13234
Tssr29416 3 65957488 to 65957537 49 + TSS region transcription start site region 29416
Gm37305 3 65957758 to 65962036 4278 + antisense lncRNA gene predicted gene, 37305
Tssr33474 3 65958140 to 65958151 11 - TSS region transcription start site region 33474
Tssr33475 3 65958174 to 65958189 15 - TSS region transcription start site region 33475
Tssr33476 3 65958199 to 65958222 23 - TSS region transcription start site region 33476
Tssr33477 3 65958236 to 65958252 16 - TSS region transcription start site region 33477
Tssr33478 3 65958257 to 65958263 6 - TSS region transcription start site region 33478
Tssr29417 3 65958307 to 65958335 28 + TSS region transcription start site region 29417
Tssr29418 3 65958409 to 65958423 14 + TSS region transcription start site region 29418
Tssr33479 3 65958509 to 65958534 25 - TSS region transcription start site region 33479
Tssr33480 3 65958544 to 65958561 17 - TSS region transcription start site region 33480
Tssr29419 3 65958709 to 65958721 12 + TSS region transcription start site region 29419
Gm35106 3 65968902 to 65969151 249 - pseudogene predicted gene, 35106
Gm37078 3 65969914 to 65971922 2008 + unclassified gene predicted gene, 37078
Cpgi13235 3 65974441 to 65975055 614 CpG island CpG island 13235
Tssr33481 3 65974690 to 65974697 7 - TSS region transcription start site region 33481
Tssr33482 3 65974730 to 65974743 13 - TSS region transcription start site region 33482
Tssr33483 3 65974746 to 65974766 20 - TSS region transcription start site region 33483
Tssr29420 3 65974879 to 65974900 21 + TSS region transcription start site region 29420
Tssr29421 3 65975002 to 65975013 11 + TSS region transcription start site region 29421
Gm19024 3 65988686 to 65989492 806 - pseudogene predicted gene, 19024
Gm6546 3 66029540 to 66031519 1979 - pseudogene predicted gene 6546
Veph1 3 66053558 to 66296837 243279 - protein coding gene ventricular zone expressed PH domain-containing 1
Gm37822 3 66086684 to 66087792 1108 + unclassified gene predicted gene, 37822
Gm26442 3 66088109 to 66088261 152 - snRNA gene predicted gene, 26442
Tssr33484 3 66088257 to 66088259 2 - TSS region transcription start site region 33484
D3Mit297 3 66090909 to 66091017 108 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 297
Gm36973 3 66099805 to 66100063 258 + pseudogene predicted gene, 36973
Tpi-rs2 3 66128968 to 66129723 755 - pseudogene triosephosphate isomerase related sequence 2
Tssr33485 3 66136432 to 66136449 17 - TSS region transcription start site region 33485
Gm37330 3 66191093 to 66191245 152 - pseudogene predicted gene, 37330
Tssr33486 3 66193528 to 66193532 4 - TSS region transcription start site region 33486
Tssr29422 3 66219909 to 66219927 18 + TSS region transcription start site region 29422
Ptx3 3 66219910 to 66225805 5895 + protein coding gene pentraxin related gene
Tssr29423 3 66219942 to 66219951 9 + TSS region transcription start site region 29423
Tssr29424 3 66219960 to 66219965 5 + TSS region transcription start site region 29424
Tssr29425 3 66219969 to 66219988 19 + TSS region transcription start site region 29425
Cpgi13236 3 66220497 to 66221226 729 CpG island CpG island 13236
Tssr29426 3 66225518 to 66225520 2 + TSS region transcription start site region 29426
Tssr33487 3 66253682 to 66253694 12 - TSS region transcription start site region 33487
Cpgi13237 3 66292441 to 66292705 264 CpG island CpG island 13237
Tssr33488 3 66296707 to 66296762 55 - TSS region transcription start site region 33488
Tssr33489 3 66296807 to 66296822 15 - TSS region transcription start site region 33489
Tssr33490 3 66296918 to 66296930 12 - TSS region transcription start site region 33490
Gm50014 3 66364539 to 66364626 87 + pseudogene predicted gene, 50014
Gm35184 3 66374299 to 66388105 13806 + lncRNA gene predicted gene, 35184
Gm35236 3 66400407 to 66406066 5659 + lncRNA gene predicted gene, 35236
Tssr29427 3 66401147 to 66401161 14 + TSS region transcription start site region 29427
Ath23 3 66450160 to 66450160 0 QTL atherosclerosis 23
Gm17952 3 66562805 to 66563551 746 - pseudogene predicted gene, 17952
D3Nds29 3 66587578 to 66587695 117 DNA segment DNA segment, Chr 3, Nuffield Department of Surgery 29
D3Mit241 3 66587584 to 66587697 113 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 241
Hdl5 3 66587584 to 66587697 113 QTL HDL level 5
Susp 3 66587584 to 66587697 113 QTL suppressor of superoxide production
Gm6555 3 66882350 to 66883138 788 + pseudogene predicted gene 6555
D3Mit71 3 66891236 to 66891364 128 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 71
Gm38356 3 66907359 to 66907766 407 - pseudogene predicted gene, 38356
Gm43516 3 66953541 to 66953862 321 + pseudogene predicted gene 43516
Cpgi13238 3 66970441 to 66970958 517 CpG island CpG island 13238
Shox2 3 66971727 to 66981771 10044 - protein coding gene short stature homeobox 2
Cpgi13239 3 66973300 to 66974263 963 CpG island CpG island 13239
Tssr33491 3 66973780 to 66973827 47 - TSS region transcription start site region 33491
Cpgi13240 3 66978173 to 66979254 1081 CpG island CpG island 13240
Cpgi13241 3 66980747 to 66981630 883 CpG island CpG island 13241