Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:63581277-67431637

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260 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Plch1 3 63696234 to 63899472 203238 - protein coding gene phospholipase C, eta 1
Gm23500 3 63770212 to 63770309 97 + snRNA gene predicted gene, 23500
Gm46807 3 63796100 to 63836853 40753 + lncRNA gene predicted gene, 46807
D3Mit228 3 63820506 to 63820655 149 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 228
Gm16162 3 63825794 to 63826444 650 + pseudogene predicted gene 16162
Gm16129 3 63843116 to 63844069 953 + pseudogene predicted gene 16129
Tssr33434 3 63851251 to 63851290 39 - TSS region transcription start site region 33434
Tssr33435 3 63854097 to 63854103 6 - TSS region transcription start site region 33435
Tssr33436 3 63862818 to 63862820 2 - TSS region transcription start site region 33436
Tssr33437 3 63865377 to 63865380 3 - TSS region transcription start site region 33437
Tssr33438 3 63891335 to 63891340 5 - TSS region transcription start site region 33438
Tssr33439 3 63893827 to 63893855 28 - TSS region transcription start site region 33439
Cpgi13219 3 63898643 to 63899255 612 CpG island CpG island 13219
Tssr33440 3 63899396 to 63899407 11 - TSS region transcription start site region 33440
Tssr33441 3 63899410 to 63899432 22 - TSS region transcription start site region 33441
Tssr33442 3 63899437 to 63899477 40 - TSS region transcription start site region 33442
Cpgi13220 3 63905319 to 63905557 238 CpG island CpG island 13220
Tssr891 3 63905327 to 63905334 7 + TSS region transcription start site region 891
Gm34379 3 63905429 to 63905718 289 + pseudogene predicted gene, 34379
E130311K13Rik 3 63914682 to 63929385 14703 - protein coding gene RIKEN cDNA E130311K13 gene
Cpgi13221 3 63928993 to 63929550 557 CpG island CpG island 13221
Tssr33443 3 63929376 to 63929413 37 - TSS region transcription start site region 33443
Slc33a1 3 63942323 to 63964733 22410 - protein coding gene solute carrier family 33 (acetyl-CoA transporter), member 1
Tssr29376 3 63963631 to 63963643 12 + TSS region transcription start site region 29376
Gm26850 3 63963633 to 63968659 5026 + antisense lncRNA gene predicted gene, 26850
Cpgi13222 3 63963945 to 63965028 1083 CpG island CpG island 13222
Tssr33444 3 63964534 to 63964549 15 - TSS region transcription start site region 33444
Tssr33445 3 63964557 to 63964570 13 - TSS region transcription start site region 33445
Tssr33446 3 63964571 to 63964604 33 - TSS region transcription start site region 33446
Tssr33447 3 63964606 to 63964624 18 - TSS region transcription start site region 33447
Tssr33448 3 63964659 to 63964666 7 - TSS region transcription start site region 33448
Tssr33449 3 63964774 to 63964785 11 - TSS region transcription start site region 33449
Tssr29377 3 63964789 to 63964830 41 + TSS region transcription start site region 29377
Tssr29378 3 63964831 to 63964841 10 + TSS region transcription start site region 29378
Cpgi13223 3 63975982 to 63976958 976 CpG island CpG island 13223
Gmps 3 63976106 to 64022579 46473 + protein coding gene guanine monophosphate synthetase
Tssr29379 3 63976109 to 63976135 26 + TSS region transcription start site region 29379
Tssr29380 3 63976137 to 63976211 74 + TSS region transcription start site region 29380
Tssr29381 3 63984214 to 63984238 24 + TSS region transcription start site region 29381
Tssr29382 3 64022786 to 64022788 2 + TSS region transcription start site region 29382
Tssr29383 3 64039299 to 64039300 1 + TSS region transcription start site region 29383
Vmn2r-ps3 3 64053031 to 64055610 2579 - pseudogene vomeronasal 2, receptor, pseudogene 3
Vmn2r1 3 64081547 to 64109484 27937 + protein coding gene vomeronasal 2, receptor 1
Gm22165 3 64109635 to 64109737 102 + snRNA gene predicted gene, 22165
Vmn2r2 3 64115278 to 64141928 26650 - protein coding gene vomeronasal 2, receptor 2
Gm5139 3 64163390 to 64163638 248 + pseudogene predicted gene 5139
Gm18294 3 64200021 to 64213680 13659 - pseudogene predicted gene, 18294
Tssr33450 3 64233577 to 64233580 3 - TSS region transcription start site region 33450
Gm34462 3 64233728 to 64235460 1732 + lncRNA gene predicted gene, 34462
Vmn2r3 3 64258934 to 64287426 28492 - protein coding gene vomeronasal 2, receptor 3
Ifld3 3 64275818 to 64276189 371 unclassified gene induced in fatty liver dystrophy 3
Gm23897 3 64318407 to 64318564 157 - snoRNA gene predicted gene, 23897
Vmn2r-ps4 3 64332113 to 64332850 737 + pseudogene vomeronasal 2, receptor, pseudogene 4
Vmn2r-ps5 3 64339565 to 64355685 16120 - pseudogene vomeronasal 2, receptor, pseudogene 5
Vmn2r4 3 64388561 to 64415320 26759 - protein coding gene vomeronasal 2, receptor 4
Vmn2r-ps6 3 64436976 to 64438284 1308 - pseudogene vomeronasal 2, receptor, pseudogene 6
Vmn2r-ps7 3 64442693 to 64443972 1279 - pseudogene vomeronasal 2, receptor, pseudogene 7
Gm20656 3 64447967 to 64460095 12128 + pseudogene predicted gene 20656
Vmn2r-ps8 3 64478578 to 64479316 738 + pseudogene vomeronasal 2, receptor, pseudogene 8
Vmn2r5 3 64490821 to 64507685 16864 - protein coding gene vomeronasal 2, receptor 5
Vmn2r6 3 64537501 to 64565434 27933 - protein coding gene vomeronasal 2, receptor 6
Vmn2r-ps9 3 64591608 to 64592895 1287 - pseudogene vomeronasal 2, receptor, pseudogene 9
Gm20657 3 64596913 to 64605773 8860 + pseudogene predicted gene 20657
Gm3040 3 64600429 to 64601138 709 + pseudogene predicted gene 3040
Vmn2r-ps10 3 64623254 to 64623992 738 + pseudogene vomeronasal 2, receptor, pseudogene 10
Vmn2r-ps11 3 64632574 to 64662261 29687 - pseudogene vomeronasal 2, receptor, pseudogene 11
Gm26939 3 64632863 to 64844743 211880 - unclassified non-coding RNA gene predicted gene, 26939
Vmn2r7 3 64690660 to 64719602 28942 - protein coding gene vomeronasal 2, receptor 7
Vmn2r-ps12 3 64744833 to 64745617 784 - pseudogene vomeronasal 2, receptor, pseudogene 12
Tssr33451 3 64757468 to 64757470 2 - TSS region transcription start site region 33451
Tssr33452 3 64844717 to 64844728 11 - TSS region transcription start site region 33452
Gm25222 3 64894471 to 64894596 125 - snoRNA gene predicted gene, 25222
Vmn2r-ps13 3 64899157 to 64899762 605 + pseudogene vomeronasal 2, receptor, pseudogene 13
Tssr29384 3 64949211 to 64949219 8 + TSS region transcription start site region 29384
Gm38048 3 64949223 to 65223701 274478 + sense overlapping lncRNA gene predicted gene, 38048
Tssr29385 3 64949229 to 64949243 14 + TSS region transcription start site region 29385
Tssr29386 3 64949290 to 64949295 5 + TSS region transcription start site region 29386
Cpgi13224 3 64949388 to 64949679 291 CpG island CpG island 13224
Tssr29387 3 64977483 to 64977496 13 + TSS region transcription start site region 29387
Tssr29388 3 64977531 to 64977546 15 + TSS region transcription start site region 29388
Tssr29389 3 64977586 to 64977597 11 + TSS region transcription start site region 29389
Tssr892 3 65108899 to 65108911 12 + TSS region transcription start site region 892
Tssr29390 3 65108968 to 65108987 19 + TSS region transcription start site region 29390
Tssr29391 3 65108996 to 65109037 41 + TSS region transcription start site region 29391
Tssr29392 3 65109043 to 65109089 46 + TSS region transcription start site region 29392
Cpgi13225 3 65109152 to 65109373 221 CpG island CpG island 13225
Tssr29393 3 65109269 to 65109287 18 + TSS region transcription start site region 29393
Tssr29394 3 65109329 to 65109340 11 + TSS region transcription start site region 29394
Tssr29395 3 65109343 to 65109420 77 + TSS region transcription start site region 29395
Kcnab1 3 65109384 to 65378223 268839 + protein coding gene potassium voltage-gated channel, shaker-related subfamily, beta member 1
Tssr29396 3 65109471 to 65109486 15 + TSS region transcription start site region 29396
Tssr29397 3 65109499 to 65109534 35 + TSS region transcription start site region 29397
Cpgi13226 3 65109794 to 65109992 198 CpG island CpG island 13226
A330015K06Rik 3 65133060 to 65302685 169625 - antisense lncRNA gene RIKEN cDNA A330015K06 gene
Tssr29398 3 65188112 to 65188143 31 + TSS region transcription start site region 29398
Tssr33453 3 65200565 to 65200566 1 - TSS region transcription start site region 33453
Tssr33454 3 65295893 to 65295905 12 - TSS region transcription start site region 33454
Tssr33455 3 65295907 to 65295918 11 - TSS region transcription start site region 33455
Tssr33456 3 65302651 to 65302662 11 - TSS region transcription start site region 33456
Tssr33457 3 65302755 to 65302765 10 - TSS region transcription start site region 33457
A730090N16Rik 3 65324776 to 65349429 24653 - antisense lncRNA gene RIKEN cDNA A730090N16 gene
Tssr29399 3 65339539 to 65339542 3 + TSS region transcription start site region 29399
Ssr3 3 65379657 to 65392553 12896 - protein coding gene signal sequence receptor, gamma
Tssr33458 3 65380307 to 65380321 14 - TSS region transcription start site region 33458
Tssr33459 3 65380782 to 65380793 11 - TSS region transcription start site region 33459
Tssr33460 3 65380931 to 65380948 17 - TSS region transcription start site region 33460
Tssr33461 3 65381040 to 65381057 17 - TSS region transcription start site region 33461
Tssr33462 3 65381276 to 65381289 13 - TSS region transcription start site region 33462
Tssr33463 3 65381396 to 65381400 4 - TSS region transcription start site region 33463
Tssr893 3 65390981 to 65390986 5 - TSS region transcription start site region 893
Cpgi13227 3 65392001 to 65392926 925 CpG island CpG island 13227
Tssr33464 3 65392546 to 65392562 16 - TSS region transcription start site region 33464
Tssr33465 3 65392579 to 65392595 16 - TSS region transcription start site region 33465
Cpgi13228 3 65393300 to 65393474 174 CpG island CpG island 13228
Gm5540 3 65393337 to 65395184 1847 + pseudogene predicted pseudogene 5540
Cpgi13229 3 65394800 to 65394959 159 CpG island CpG island 13229
Gm34576 3 65449410 to 65479809 30399 + lncRNA gene predicted gene, 34576
Tssr29400 3 65449534 to 65449539 5 + TSS region transcription start site region 29400
Tssr29401 3 65449543 to 65449553 10 + TSS region transcription start site region 29401
Tssr894 3 65473350 to 65473351 1 + TSS region transcription start site region 894
Gm34780 3 65494087 to 65495035 948 - lncRNA gene predicted gene, 34780
Gm40066 3 65495168 to 65517292 22124 + lncRNA gene predicted gene, 40066
Gm37009 3 65506277 to 65506637 360 - pseudogene predicted gene, 37009
Gm38503 3 65506457 to 65520039 13582 - lncRNA gene predicted gene, 38503
Tssr895 3 65515499 to 65515501 2 + TSS region transcription start site region 895
Tssr29402 3 65516121 to 65516136 15 + TSS region transcription start site region 29402
Gm22279 3 65525701 to 65525793 92 + snRNA gene predicted gene, 22279
4931440P22Rik 3 65527483 to 65529414 1931 - lncRNA gene RIKEN cDNA 4931440P22 gene
Cpgi13230 3 65527655 to 65529797 2142 CpG island CpG island 13230
Tssr29403 3 65527801 to 65527844 43 + TSS region transcription start site region 29403
Tssr29404 3 65528001 to 65528021 20 + TSS region transcription start site region 29404
Tssr29405 3 65528404 to 65528431 27 + TSS region transcription start site region 29405
Tssr29406 3 65528434 to 65528454 20 + TSS region transcription start site region 29406
Tiparp 3 65528447 to 65555518 27071 + protein coding gene TCDD-inducible poly(ADP-ribose) polymerase
Tssr29407 3 65528457 to 65528471 14 + TSS region transcription start site region 29407
Tssr33466 3 65529355 to 65529384 29 - TSS region transcription start site region 33466
Tssr29408 3 65531246 to 65531260 14 + TSS region transcription start site region 29408
Tssr29409 3 65531665 to 65531695 30 + TSS region transcription start site region 29409
Gm34924 3 65575219 to 65580850 5631 - lncRNA gene predicted gene, 34924
Cpgi13231 3 65586435 to 65586699 264 CpG island CpG island 13231
Tssr896 3 65613493 to 65613494 1 + TSS region transcription start site region 896
Gm5847 3 65613589 to 65615183 1594 + pseudogene predicted gene 5847
Gm38233 3 65615368 to 65616174 806 - pseudogene predicted gene, 38233
Tssr33467 3 65639278 to 65639303 25 - TSS region transcription start site region 33467
Cpgi13232 3 65658800 to 65659804 1004 CpG island CpG island 13232
Tssr33468 3 65658908 to 65658947 39 - TSS region transcription start site region 33468
Tssr29410 3 65659219 to 65659242 23 + TSS region transcription start site region 29410
Mir8120 3 65659288 to 65659426 138 + miRNA gene microRNA 8120
Cpgi13233 3 65665884 to 65666759 875 CpG island CpG island 13233
Tssr29411 3 65666223 to 65666259 36 + TSS region transcription start site region 29411
Lekr1 3 65666228 to 65831159 164931 + protein coding gene leucine, glutamate and lysine rich 1
Tssr29412 3 65666260 to 65666293 33 + TSS region transcription start site region 29412
Gm37776 3 65678386 to 65680882 2496 + unclassified gene predicted gene, 37776
Tssr29413 3 65678397 to 65678403 6 + TSS region transcription start site region 29413
Tssr29414 3 65703558 to 65703562 4 + TSS region transcription start site region 29414
Gm25755 3 65771511 to 65771617 106 - snRNA gene predicted gene, 25755
Tssr29415 3 65806606 to 65806611 5 + TSS region transcription start site region 29415
Gm37359 3 65829116 to 65872281 43165 - antisense lncRNA gene predicted gene, 37359
Gm37131 3 65863269 to 65864829 1560 - unclassified gene predicted gene, 37131
Tssr33469 3 65922593 to 65922595 2 - TSS region transcription start site region 33469
Tssr33470 3 65925909 to 65925948 39 - TSS region transcription start site region 33470
Gm35039 3 65926103 to 65928278 2175 - lncRNA gene predicted gene, 35039
Tssr33471 3 65929355 to 65929377 22 - TSS region transcription start site region 33471
Tssr33472 3 65929415 to 65929442 27 - TSS region transcription start site region 33472
Gm37037 3 65933485 to 65933908 423 - pseudogene predicted gene, 37037
Tssr33473 3 65945129 to 65945138 9 - TSS region transcription start site region 33473
Ccnl1 3 65946151 to 65958249 12098 - protein coding gene cyclin L1
Cpgi13234 3 65957231 to 65958732 1501 CpG island CpG island 13234
Tssr29416 3 65957488 to 65957537 49 + TSS region transcription start site region 29416
Gm37305 3 65957758 to 65962036 4278 + antisense lncRNA gene predicted gene, 37305
Tssr33474 3 65958140 to 65958151 11 - TSS region transcription start site region 33474
Tssr33475 3 65958174 to 65958189 15 - TSS region transcription start site region 33475
Tssr33476 3 65958199 to 65958222 23 - TSS region transcription start site region 33476
Tssr33477 3 65958236 to 65958252 16 - TSS region transcription start site region 33477
Tssr33478 3 65958257 to 65958263 6 - TSS region transcription start site region 33478
Tssr29417 3 65958307 to 65958335 28 + TSS region transcription start site region 29417
Tssr29418 3 65958409 to 65958423 14 + TSS region transcription start site region 29418
Tssr33479 3 65958509 to 65958534 25 - TSS region transcription start site region 33479
Tssr33480 3 65958544 to 65958561 17 - TSS region transcription start site region 33480
Tssr29419 3 65958709 to 65958721 12 + TSS region transcription start site region 29419
Gm35106 3 65968902 to 65969151 249 - pseudogene predicted gene, 35106
Gm37078 3 65969914 to 65971922 2008 + unclassified gene predicted gene, 37078
Cpgi13235 3 65974441 to 65975055 614 CpG island CpG island 13235
Tssr33481 3 65974690 to 65974697 7 - TSS region transcription start site region 33481
Tssr33482 3 65974730 to 65974743 13 - TSS region transcription start site region 33482
Tssr33483 3 65974746 to 65974766 20 - TSS region transcription start site region 33483
Tssr29420 3 65974879 to 65974900 21 + TSS region transcription start site region 29420
Tssr29421 3 65975002 to 65975013 11 + TSS region transcription start site region 29421
Gm19024 3 65988686 to 65989492 806 - pseudogene predicted gene, 19024
Gm6546 3 66029540 to 66031519 1979 - pseudogene predicted gene 6546
Veph1 3 66053558 to 66296837 243279 - protein coding gene ventricular zone expressed PH domain-containing 1
Gm37822 3 66086684 to 66087792 1108 + unclassified gene predicted gene, 37822
Gm26442 3 66088109 to 66088261 152 - snRNA gene predicted gene, 26442
Tssr33484 3 66088257 to 66088259 2 - TSS region transcription start site region 33484
D3Mit297 3 66090909 to 66091017 108 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 297
Gm36973 3 66099805 to 66100063 258 + pseudogene predicted gene, 36973
Tpi-rs2 3 66128968 to 66129723 755 - pseudogene triosephosphate isomerase related sequence 2
Tssr33485 3 66136432 to 66136449 17 - TSS region transcription start site region 33485
Gm37330 3 66191093 to 66191245 152 - pseudogene predicted gene, 37330
Tssr33486 3 66193528 to 66193532 4 - TSS region transcription start site region 33486