Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:63510278-64746928

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69 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Plch1 3 63696234 to 63899472 203238 - protein coding gene phospholipase C, eta 1
Gm23500 3 63770212 to 63770309 97 + snRNA gene predicted gene, 23500
Gm46807 3 63796100 to 63836853 40753 + lncRNA gene predicted gene, 46807
D3Mit228 3 63820506 to 63820655 149 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 228
Gm16162 3 63825794 to 63826444 650 + pseudogene predicted gene 16162
Gm16129 3 63843116 to 63844069 953 + pseudogene predicted gene 16129
Tssr33434 3 63851251 to 63851290 39 - TSS region transcription start site region 33434
Tssr33435 3 63854097 to 63854103 6 - TSS region transcription start site region 33435
Tssr33436 3 63862818 to 63862820 2 - TSS region transcription start site region 33436
Tssr33437 3 63865377 to 63865380 3 - TSS region transcription start site region 33437
Tssr33438 3 63891335 to 63891340 5 - TSS region transcription start site region 33438
Tssr33439 3 63893827 to 63893855 28 - TSS region transcription start site region 33439
Cpgi13219 3 63898643 to 63899255 612 CpG island CpG island 13219
Tssr33440 3 63899396 to 63899407 11 - TSS region transcription start site region 33440
Tssr33441 3 63899410 to 63899432 22 - TSS region transcription start site region 33441
Tssr33442 3 63899437 to 63899477 40 - TSS region transcription start site region 33442
Cpgi13220 3 63905319 to 63905557 238 CpG island CpG island 13220
Tssr891 3 63905327 to 63905334 7 + TSS region transcription start site region 891
Gm34379 3 63905429 to 63905718 289 + pseudogene predicted gene, 34379
E130311K13Rik 3 63914682 to 63929385 14703 - protein coding gene RIKEN cDNA E130311K13 gene
Cpgi13221 3 63928993 to 63929550 557 CpG island CpG island 13221
Tssr33443 3 63929376 to 63929413 37 - TSS region transcription start site region 33443
Slc33a1 3 63942323 to 63964733 22410 - protein coding gene solute carrier family 33 (acetyl-CoA transporter), member 1
Tssr29376 3 63963631 to 63963643 12 + TSS region transcription start site region 29376
Gm26850 3 63963633 to 63968659 5026 + antisense lncRNA gene predicted gene, 26850
Cpgi13222 3 63963945 to 63965028 1083 CpG island CpG island 13222
Tssr33444 3 63964534 to 63964549 15 - TSS region transcription start site region 33444
Tssr33445 3 63964557 to 63964570 13 - TSS region transcription start site region 33445
Tssr33446 3 63964571 to 63964604 33 - TSS region transcription start site region 33446
Tssr33447 3 63964606 to 63964624 18 - TSS region transcription start site region 33447
Tssr33448 3 63964659 to 63964666 7 - TSS region transcription start site region 33448
Tssr33449 3 63964774 to 63964785 11 - TSS region transcription start site region 33449
Tssr29377 3 63964789 to 63964830 41 + TSS region transcription start site region 29377
Tssr29378 3 63964831 to 63964841 10 + TSS region transcription start site region 29378
Cpgi13223 3 63975982 to 63976958 976 CpG island CpG island 13223
Gmps 3 63976106 to 64022579 46473 + protein coding gene guanine monophosphate synthetase
Tssr29379 3 63976109 to 63976135 26 + TSS region transcription start site region 29379
Tssr29380 3 63976137 to 63976211 74 + TSS region transcription start site region 29380
Tssr29381 3 63984214 to 63984238 24 + TSS region transcription start site region 29381
Tssr29382 3 64022786 to 64022788 2 + TSS region transcription start site region 29382
Tssr29383 3 64039299 to 64039300 1 + TSS region transcription start site region 29383
Vmn2r-ps3 3 64053031 to 64055610 2579 - pseudogene vomeronasal 2, receptor, pseudogene 3
Vmn2r1 3 64081547 to 64109484 27937 + protein coding gene vomeronasal 2, receptor 1
Gm22165 3 64109635 to 64109737 102 + snRNA gene predicted gene, 22165
Vmn2r2 3 64115278 to 64141928 26650 - protein coding gene vomeronasal 2, receptor 2
Gm5139 3 64163390 to 64163638 248 + pseudogene predicted gene 5139
Gm18294 3 64200021 to 64213680 13659 - pseudogene predicted gene, 18294
Tssr33450 3 64233577 to 64233580 3 - TSS region transcription start site region 33450
Gm34462 3 64233728 to 64235460 1732 + lncRNA gene predicted gene, 34462
Vmn2r3 3 64258934 to 64287426 28492 - protein coding gene vomeronasal 2, receptor 3
Ifld3 3 64275818 to 64276189 371 unclassified gene induced in fatty liver dystrophy 3
Gm23897 3 64318407 to 64318564 157 - snoRNA gene predicted gene, 23897
Vmn2r-ps4 3 64332113 to 64332850 737 + pseudogene vomeronasal 2, receptor, pseudogene 4
Vmn2r-ps5 3 64339565 to 64355685 16120 - pseudogene vomeronasal 2, receptor, pseudogene 5
Vmn2r4 3 64388561 to 64415320 26759 - protein coding gene vomeronasal 2, receptor 4
Vmn2r-ps6 3 64436976 to 64438284 1308 - pseudogene vomeronasal 2, receptor, pseudogene 6
Vmn2r-ps7 3 64442693 to 64443972 1279 - pseudogene vomeronasal 2, receptor, pseudogene 7
Gm20656 3 64447967 to 64460095 12128 + pseudogene predicted gene 20656
Vmn2r-ps8 3 64478578 to 64479316 738 + pseudogene vomeronasal 2, receptor, pseudogene 8
Vmn2r5 3 64490821 to 64507685 16864 - protein coding gene vomeronasal 2, receptor 5
Vmn2r6 3 64537501 to 64565434 27933 - protein coding gene vomeronasal 2, receptor 6
Vmn2r-ps9 3 64591608 to 64592895 1287 - pseudogene vomeronasal 2, receptor, pseudogene 9
Gm20657 3 64596913 to 64605773 8860 + pseudogene predicted gene 20657
Gm3040 3 64600429 to 64601138 709 + pseudogene predicted gene 3040
Vmn2r-ps10 3 64623254 to 64623992 738 + pseudogene vomeronasal 2, receptor, pseudogene 10
Vmn2r-ps11 3 64632574 to 64662261 29687 - pseudogene vomeronasal 2, receptor, pseudogene 11
Gm26939 3 64632863 to 64844743 211880 - unclassified non-coding RNA gene predicted gene, 26939
Vmn2r7 3 64690660 to 64719602 28942 - protein coding gene vomeronasal 2, receptor 7
Vmn2r-ps12 3 64744833 to 64745617 784 - pseudogene vomeronasal 2, receptor, pseudogene 12