Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:61430278-66826928

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286 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm8349 3 61461859 to 61462861 1002 - pseudogene predicted gene 8349
D3Mit1008 3 61883612 to 61883737 125 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 1008
Gm9700 3 62068309 to 62069514 1205 - pseudogene predicted gene 9700
Gm37404 3 62123207 to 62123565 358 + unclassified gene predicted gene, 37404
Tssr29346 3 62159097 to 62159103 6 + TSS region transcription start site region 29346
Tssr29347 3 62159191 to 62159209 18 + TSS region transcription start site region 29347
Tssr29348 3 62159231 to 62159242 11 + TSS region transcription start site region 29348
Tssr29349 3 62159293 to 62159334 41 + TSS region transcription start site region 29349
9330121J05Rik 3 62337524 to 62340532 3008 - antisense lncRNA gene RIKEN cDNA 9330121J05 gene
Cpgi13214 3 62338545 to 62340411 1866 CpG island CpG island 13214
Arhgef26 3 62338777 to 62462221 123444 + protein coding gene Rho guanine nucleotide exchange factor (GEF) 26
Tssr29350 3 62338941 to 62339012 71 + TSS region transcription start site region 29350
Tssr29351 3 62339024 to 62339037 13 + TSS region transcription start site region 29351
Tssr29352 3 62339573 to 62339610 37 + TSS region transcription start site region 29352
Tssr29353 3 62340046 to 62340058 12 + TSS region transcription start site region 29353
Gm33923 3 62341390 to 62350523 9133 - lncRNA gene predicted gene, 33923
Tssr889 3 62396422 to 62396426 4 + TSS region transcription start site region 889
D3Mit361 3 62433165 to 62433296 131 DNA segment DNA Segment, Chr 3, Massachusetts Institute of Technology-361
Tssr29354 3 62435657 to 62435664 7 + TSS region transcription start site region 29354
Tssr29355 3 62444873 to 62444877 4 + TSS region transcription start site region 29355
Dhx36 3 62468013 to 62507004 38991 - protein coding gene DEAH (Asp-Glu-Ala-His) box polypeptide 36
Tssr33430 3 62480194 to 62480204 10 - TSS region transcription start site region 33430
Cpgi13215 3 62506488 to 62507222 734 CpG island CpG island 13215
Tssr33431 3 62506949 to 62506967 18 - TSS region transcription start site region 33431
Tssr33432 3 62506970 to 62507027 57 - TSS region transcription start site region 33432
Gpr149 3 62529430 to 62605442 76012 - protein coding gene G protein-coupled receptor 149
Cpgi13216 3 62603503 to 62604200 697 CpG island CpG island 13216
Gm34048 3 62604932 to 62763934 159002 + lncRNA gene predicted gene, 34048
Gm18382 3 62761443 to 62762024 581 + pseudogene predicted gene, 18382
Gm40062 3 62771982 to 62860635 88653 + lncRNA gene predicted gene, 40062
Gm40063 3 62867684 to 62889000 21316 + lncRNA gene predicted gene, 40063
Gm9701 3 62923807 to 62924233 426 - pseudogene predicted gene 9701
Tssr33433 3 62924257 to 62924266 9 - TSS region transcription start site region 33433
Gm22433 3 63152217 to 63152358 141 + snoRNA gene predicted gene, 22433
Gm8388 3 63173109 to 63173860 751 - pseudogene predicted gene 8388
Cpgi13217 3 63173784 to 63174069 285 CpG island CpG island 13217
Gm40064 3 63232817 to 63245447 12630 - lncRNA gene predicted gene, 40064
Tssr29356 3 63241468 to 63241469 1 + TSS region transcription start site region 29356
Tssr29357 3 63266815 to 63266819 4 + TSS region transcription start site region 29357
Mme 3 63295224 to 63383713 88489 + protein coding gene membrane metallo endopeptidase
Cpgi13218 3 63295374 to 63296250 876 CpG island CpG island 13218
Tssr29358 3 63295424 to 63295438 14 + TSS region transcription start site region 29358
Tssr29359 3 63295440 to 63295506 66 + TSS region transcription start site region 29359
Tssr29360 3 63295524 to 63295598 74 + TSS region transcription start site region 29360
Tssr29361 3 63295612 to 63295623 11 + TSS region transcription start site region 29361
Tssr29362 3 63295815 to 63295830 15 + TSS region transcription start site region 29362
Tssr29363 3 63295992 to 63296016 24 + TSS region transcription start site region 29363
Tssr29364 3 63296164 to 63296171 7 + TSS region transcription start site region 29364
Tssr29365 3 63296176 to 63296194 18 + TSS region transcription start site region 29365
Tssr29366 3 63296201 to 63296223 22 + TSS region transcription start site region 29366
Tssr29367 3 63298005 to 63298054 49 + TSS region transcription start site region 29367
Tssr890 3 63299731 to 63299742 11 + TSS region transcription start site region 890
Tssr29368 3 63299750 to 63299765 15 + TSS region transcription start site region 29368
Tssr29369 3 63331664 to 63331670 6 + TSS region transcription start site region 29369
Tssr29370 3 63345206 to 63345227 21 + TSS region transcription start site region 29370
Tssr29371 3 63361998 to 63362024 26 + TSS region transcription start site region 29371
Tssr29372 3 63380413 to 63380460 47 + TSS region transcription start site region 29372
Tssr29373 3 63381324 to 63381354 30 + TSS region transcription start site region 29373
Tssr29374 3 63382958 to 63382964 6 + TSS region transcription start site region 29374
Tssr29375 3 63439244 to 63439264 20 + TSS region transcription start site region 29375
Gm34240 3 63439251 to 63457897 18646 + lincRNA gene predicted gene, 34240
Strit1 3 63481112 to 63483879 2767 - lncRNA gene small transmembrane regulator of ion transport 1
Gm37279 3 63483884 to 63484369 485 + unclassified gene predicted gene, 37279
Gm24946 3 63488993 to 63489098 105 + snRNA gene predicted gene, 24946
Plch1 3 63696234 to 63899472 203238 - protein coding gene phospholipase C, eta 1
Gm23500 3 63770212 to 63770309 97 + snRNA gene predicted gene, 23500
Gm46807 3 63796100 to 63836853 40753 + lncRNA gene predicted gene, 46807
D3Mit228 3 63820506 to 63820655 149 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 228
Gm16162 3 63825794 to 63826444 650 + pseudogene predicted gene 16162
Gm16129 3 63843116 to 63844069 953 + pseudogene predicted gene 16129
Tssr33434 3 63851251 to 63851290 39 - TSS region transcription start site region 33434
Tssr33435 3 63854097 to 63854103 6 - TSS region transcription start site region 33435
Tssr33436 3 63862818 to 63862820 2 - TSS region transcription start site region 33436
Tssr33437 3 63865377 to 63865380 3 - TSS region transcription start site region 33437
Tssr33438 3 63891335 to 63891340 5 - TSS region transcription start site region 33438
Tssr33439 3 63893827 to 63893855 28 - TSS region transcription start site region 33439
Cpgi13219 3 63898643 to 63899255 612 CpG island CpG island 13219
Tssr33440 3 63899396 to 63899407 11 - TSS region transcription start site region 33440
Tssr33441 3 63899410 to 63899432 22 - TSS region transcription start site region 33441
Tssr33442 3 63899437 to 63899477 40 - TSS region transcription start site region 33442
Cpgi13220 3 63905319 to 63905557 238 CpG island CpG island 13220
Tssr891 3 63905327 to 63905334 7 + TSS region transcription start site region 891
Gm34379 3 63905429 to 63905718 289 + pseudogene predicted gene, 34379
E130311K13Rik 3 63914682 to 63929385 14703 - protein coding gene RIKEN cDNA E130311K13 gene
Cpgi13221 3 63928993 to 63929550 557 CpG island CpG island 13221
Tssr33443 3 63929376 to 63929413 37 - TSS region transcription start site region 33443
Slc33a1 3 63942323 to 63964733 22410 - protein coding gene solute carrier family 33 (acetyl-CoA transporter), member 1
Tssr29376 3 63963631 to 63963643 12 + TSS region transcription start site region 29376
Gm26850 3 63963633 to 63968659 5026 + antisense lncRNA gene predicted gene, 26850
Cpgi13222 3 63963945 to 63965028 1083 CpG island CpG island 13222
Tssr33444 3 63964534 to 63964549 15 - TSS region transcription start site region 33444
Tssr33445 3 63964557 to 63964570 13 - TSS region transcription start site region 33445
Tssr33446 3 63964571 to 63964604 33 - TSS region transcription start site region 33446
Tssr33447 3 63964606 to 63964624 18 - TSS region transcription start site region 33447
Tssr33448 3 63964659 to 63964666 7 - TSS region transcription start site region 33448
Tssr33449 3 63964774 to 63964785 11 - TSS region transcription start site region 33449
Tssr29377 3 63964789 to 63964830 41 + TSS region transcription start site region 29377
Tssr29378 3 63964831 to 63964841 10 + TSS region transcription start site region 29378
Cpgi13223 3 63975982 to 63976958 976 CpG island CpG island 13223
Gmps 3 63976106 to 64022579 46473 + protein coding gene guanine monophosphate synthetase
Tssr29379 3 63976109 to 63976135 26 + TSS region transcription start site region 29379
Tssr29380 3 63976137 to 63976211 74 + TSS region transcription start site region 29380
Tssr29381 3 63984214 to 63984238 24 + TSS region transcription start site region 29381
Tssr29382 3 64022786 to 64022788 2 + TSS region transcription start site region 29382
Tssr29383 3 64039299 to 64039300 1 + TSS region transcription start site region 29383
Vmn2r-ps3 3 64053031 to 64055610 2579 - pseudogene vomeronasal 2, receptor, pseudogene 3
Vmn2r1 3 64081547 to 64109484 27937 + protein coding gene vomeronasal 2, receptor 1
Gm22165 3 64109635 to 64109737 102 + snRNA gene predicted gene, 22165
Vmn2r2 3 64115278 to 64141928 26650 - protein coding gene vomeronasal 2, receptor 2
Gm5139 3 64163390 to 64163638 248 + pseudogene predicted gene 5139
Gm18294 3 64200021 to 64213680 13659 - pseudogene predicted gene, 18294
Tssr33450 3 64233577 to 64233580 3 - TSS region transcription start site region 33450
Gm34462 3 64233728 to 64235460 1732 + lncRNA gene predicted gene, 34462
Vmn2r3 3 64258934 to 64287426 28492 - protein coding gene vomeronasal 2, receptor 3
Ifld3 3 64275818 to 64276189 371 unclassified gene induced in fatty liver dystrophy 3
Gm23897 3 64318407 to 64318564 157 - snoRNA gene predicted gene, 23897
Vmn2r-ps4 3 64332113 to 64332850 737 + pseudogene vomeronasal 2, receptor, pseudogene 4
Vmn2r-ps5 3 64339565 to 64355685 16120 - pseudogene vomeronasal 2, receptor, pseudogene 5
Vmn2r4 3 64388561 to 64415320 26759 - protein coding gene vomeronasal 2, receptor 4
Vmn2r-ps6 3 64436976 to 64438284 1308 - pseudogene vomeronasal 2, receptor, pseudogene 6
Vmn2r-ps7 3 64442693 to 64443972 1279 - pseudogene vomeronasal 2, receptor, pseudogene 7
Gm20656 3 64447967 to 64460095 12128 + pseudogene predicted gene 20656
Vmn2r-ps8 3 64478578 to 64479316 738 + pseudogene vomeronasal 2, receptor, pseudogene 8
Vmn2r5 3 64490821 to 64507685 16864 - protein coding gene vomeronasal 2, receptor 5
Vmn2r6 3 64537501 to 64565434 27933 - protein coding gene vomeronasal 2, receptor 6
Vmn2r-ps9 3 64591608 to 64592895 1287 - pseudogene vomeronasal 2, receptor, pseudogene 9
Gm20657 3 64596913 to 64605773 8860 + pseudogene predicted gene 20657
Gm3040 3 64600429 to 64601138 709 + pseudogene predicted gene 3040
Vmn2r-ps10 3 64623254 to 64623992 738 + pseudogene vomeronasal 2, receptor, pseudogene 10
Vmn2r-ps11 3 64632574 to 64662261 29687 - pseudogene vomeronasal 2, receptor, pseudogene 11
Gm26939 3 64632863 to 64844743 211880 - unclassified non-coding RNA gene predicted gene, 26939
Vmn2r7 3 64690660 to 64719602 28942 - protein coding gene vomeronasal 2, receptor 7
Vmn2r-ps12 3 64744833 to 64745617 784 - pseudogene vomeronasal 2, receptor, pseudogene 12
Tssr33451 3 64757468 to 64757470 2 - TSS region transcription start site region 33451
Tssr33452 3 64844717 to 64844728 11 - TSS region transcription start site region 33452
Gm25222 3 64894471 to 64894596 125 - snoRNA gene predicted gene, 25222
Vmn2r-ps13 3 64899157 to 64899762 605 + pseudogene vomeronasal 2, receptor, pseudogene 13
Tssr29384 3 64949211 to 64949219 8 + TSS region transcription start site region 29384
Gm38048 3 64949223 to 65223701 274478 + sense overlapping lncRNA gene predicted gene, 38048
Tssr29385 3 64949229 to 64949243 14 + TSS region transcription start site region 29385
Tssr29386 3 64949290 to 64949295 5 + TSS region transcription start site region 29386
Cpgi13224 3 64949388 to 64949679 291 CpG island CpG island 13224
Tssr29387 3 64977483 to 64977496 13 + TSS region transcription start site region 29387
Tssr29388 3 64977531 to 64977546 15 + TSS region transcription start site region 29388
Tssr29389 3 64977586 to 64977597 11 + TSS region transcription start site region 29389
Tssr892 3 65108899 to 65108911 12 + TSS region transcription start site region 892
Tssr29390 3 65108968 to 65108987 19 + TSS region transcription start site region 29390
Tssr29391 3 65108996 to 65109037 41 + TSS region transcription start site region 29391
Tssr29392 3 65109043 to 65109089 46 + TSS region transcription start site region 29392
Cpgi13225 3 65109152 to 65109373 221 CpG island CpG island 13225
Tssr29393 3 65109269 to 65109287 18 + TSS region transcription start site region 29393
Tssr29394 3 65109329 to 65109340 11 + TSS region transcription start site region 29394
Tssr29395 3 65109343 to 65109420 77 + TSS region transcription start site region 29395
Kcnab1 3 65109384 to 65378223 268839 + protein coding gene potassium voltage-gated channel, shaker-related subfamily, beta member 1
Tssr29396 3 65109471 to 65109486 15 + TSS region transcription start site region 29396
Tssr29397 3 65109499 to 65109534 35 + TSS region transcription start site region 29397
Cpgi13226 3 65109794 to 65109992 198 CpG island CpG island 13226
A330015K06Rik 3 65133060 to 65302685 169625 - antisense lncRNA gene RIKEN cDNA A330015K06 gene
Tssr29398 3 65188112 to 65188143 31 + TSS region transcription start site region 29398
Tssr33453 3 65200565 to 65200566 1 - TSS region transcription start site region 33453
Tssr33454 3 65295893 to 65295905 12 - TSS region transcription start site region 33454
Tssr33455 3 65295907 to 65295918 11 - TSS region transcription start site region 33455
Tssr33456 3 65302651 to 65302662 11 - TSS region transcription start site region 33456
Tssr33457 3 65302755 to 65302765 10 - TSS region transcription start site region 33457
A730090N16Rik 3 65324776 to 65349429 24653 - antisense lncRNA gene RIKEN cDNA A730090N16 gene
Tssr29399 3 65339539 to 65339542 3 + TSS region transcription start site region 29399
Ssr3 3 65379657 to 65392553 12896 - protein coding gene signal sequence receptor, gamma
Tssr33458 3 65380307 to 65380321 14 - TSS region transcription start site region 33458
Tssr33459 3 65380782 to 65380793 11 - TSS region transcription start site region 33459
Tssr33460 3 65380931 to 65380948 17 - TSS region transcription start site region 33460
Tssr33461 3 65381040 to 65381057 17 - TSS region transcription start site region 33461
Tssr33462 3 65381276 to 65381289 13 - TSS region transcription start site region 33462
Tssr33463 3 65381396 to 65381400 4 - TSS region transcription start site region 33463
Tssr893 3 65390981 to 65390986 5 - TSS region transcription start site region 893
Cpgi13227 3 65392001 to 65392926 925 CpG island CpG island 13227
Tssr33464 3 65392546 to 65392562 16 - TSS region transcription start site region 33464
Tssr33465 3 65392579 to 65392595 16 - TSS region transcription start site region 33465
Cpgi13228 3 65393300 to 65393474 174 CpG island CpG island 13228
Gm5540 3 65393337 to 65395184 1847 + pseudogene predicted pseudogene 5540
Cpgi13229 3 65394800 to 65394959 159 CpG island CpG island 13229
Gm34576 3 65449410 to 65479809 30399 + lncRNA gene predicted gene, 34576
Tssr29400 3 65449534 to 65449539 5 + TSS region transcription start site region 29400
Tssr29401 3 65449543 to 65449553 10 + TSS region transcription start site region 29401
Tssr894 3 65473350 to 65473351 1 + TSS region transcription start site region 894
Gm34780 3 65494087 to 65495035 948 - lncRNA gene predicted gene, 34780
Gm40066 3 65495168 to 65517292 22124 + lncRNA gene predicted gene, 40066
Gm37009 3 65506277 to 65506637 360 - pseudogene predicted gene, 37009
Gm38503 3 65506457 to 65520039 13582 - lncRNA gene predicted gene, 38503
Tssr895 3 65515499 to 65515501 2 + TSS region transcription start site region 895
Tssr29402 3 65516121 to 65516136 15 + TSS region transcription start site region 29402
Gm22279 3 65525701 to 65525793 92 + snRNA gene predicted gene, 22279
4931440P22Rik 3 65527483 to 65529414 1931 - lncRNA gene RIKEN cDNA 4931440P22 gene
Cpgi13230 3 65527655 to 65529797 2142 CpG island CpG island 13230
Tssr29403 3 65527801 to 65527844 43 + TSS region transcription start site region 29403
Tssr29404 3 65528001 to 65528021 20 + TSS region transcription start site region 29404
Tssr29405 3 65528404 to 65528431 27 + TSS region transcription start site region 29405
Tssr29406 3 65528434 to 65528454 20 + TSS region transcription start site region 29406
Tiparp 3 65528447 to 65555518 27071 + protein coding gene TCDD-inducible poly(ADP-ribose) polymerase
Tssr29407 3 65528457 to 65528471 14 + TSS region transcription start site region 29407
Tssr33466 3 65529355 to 65529384 29 - TSS region transcription start site region 33466