Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:60671422-64121426

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150 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm38280 3 60737628 to 60737785 157 - pseudogene predicted gene, 38280
Gm33707 3 60769887 to 60770455 568 - pseudogene predicted gene, 33707
Gm38326 3 60788361 to 60794728 6367 + lincRNA gene predicted gene, 38326
Tssr29329 3 60806023 to 60806062 39 + TSS region transcription start site region 29329
Gm36985 3 60860707 to 60861085 378 + pseudogene predicted gene, 36985
Tssr29330 3 60877002 to 60877017 15 + TSS region transcription start site region 29330
Gm8325 3 60877014 to 60877587 573 + pseudogene predicted pseudogene 8325
Tssr33423 3 60963518 to 60963520 2 - TSS region transcription start site region 33423
Gm37035 3 61001639 to 61003786 2147 - antisense lncRNA gene predicted gene, 37035
Cpgi13211 3 61002205 to 61003871 1666 CpG island CpG island 13211
Tssr29331 3 61002778 to 61002783 5 + TSS region transcription start site region 29331
Tssr29332 3 61002786 to 61002811 25 + TSS region transcription start site region 29332
P2ry1 3 61002795 to 61008982 6187 + protein coding gene purinergic receptor P2Y, G-protein coupled 1
Gm37719 3 61291155 to 61291446 291 - pseudogene predicted gene, 37719
Gm19901 3 61328699 to 61329193 494 - pseudogene predicted gene, 19901
Gm37696 3 61358549 to 61361897 3348 - antisense lncRNA gene predicted gene, 37696
B430305J03Rik 3 61362250 to 61365951 3701 - unclassified gene RIKEN cDNA B430305J03 gene
Tssr33424 3 61363085 to 61363096 11 - TSS region transcription start site region 33424
Cpgi13212 3 61363089 to 61363427 338 CpG island CpG island 13212
Tssr33425 3 61363118 to 61363125 7 - TSS region transcription start site region 33425
Tssr33426 3 61363130 to 61363141 11 - TSS region transcription start site region 33426
Tssr29333 3 61363756 to 61363760 4 + TSS region transcription start site region 29333
Cpgi13213 3 61363850 to 61365876 2026 CpG island CpG island 13213
Tssr29334 3 61363894 to 61363907 13 + TSS region transcription start site region 29334
Tssr29335 3 61363912 to 61363948 36 + TSS region transcription start site region 29335
Tssr29336 3 61364028 to 61364056 28 + TSS region transcription start site region 29336
Tssr33427 3 61364362 to 61364410 48 - TSS region transcription start site region 33427
Rap2b 3 61364507 to 61368703 4196 + protein coding gene RAP2B, member of RAS oncogene family
Tssr29337 3 61364517 to 61364528 11 + TSS region transcription start site region 29337
Tssr29338 3 61364555 to 61364633 78 + TSS region transcription start site region 29338
Tssr29339 3 61364792 to 61364807 15 + TSS region transcription start site region 29339
Tssr33428 3 61365807 to 61365818 11 - TSS region transcription start site region 33428
Tssr29340 3 61366003 to 61366024 21 + TSS region transcription start site region 29340
Tssr29341 3 61366095 to 61366106 11 + TSS region transcription start site region 29341
Tssr29342 3 61366378 to 61366395 17 + TSS region transcription start site region 29342
Tssr29343 3 61366404 to 61366415 11 + TSS region transcription start site region 29343
Tssr29344 3 61366517 to 61366522 5 + TSS region transcription start site region 29344
Tssr29345 3 61367431 to 61367443 12 + TSS region transcription start site region 29345
Gm40061 3 61392147 to 61413034 20887 + lncRNA gene predicted gene, 40061
Tssr888 3 61409918 to 61409950 32 + TSS region transcription start site region 888
Tssr33429 3 61415991 to 61416005 14 - TSS region transcription start site region 33429
Gm8349 3 61461859 to 61462861 1002 - pseudogene predicted gene 8349
D3Mit1008 3 61883612 to 61883737 125 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 1008
Gm9700 3 62068309 to 62069514 1205 - pseudogene predicted gene 9700
Gm37404 3 62123207 to 62123565 358 + unclassified gene predicted gene, 37404
Tssr29346 3 62159097 to 62159103 6 + TSS region transcription start site region 29346
Tssr29347 3 62159191 to 62159209 18 + TSS region transcription start site region 29347
Tssr29348 3 62159231 to 62159242 11 + TSS region transcription start site region 29348
Tssr29349 3 62159293 to 62159334 41 + TSS region transcription start site region 29349
9330121J05Rik 3 62337524 to 62340532 3008 - antisense lncRNA gene RIKEN cDNA 9330121J05 gene
Cpgi13214 3 62338545 to 62340411 1866 CpG island CpG island 13214
Arhgef26 3 62338777 to 62462221 123444 + protein coding gene Rho guanine nucleotide exchange factor (GEF) 26
Tssr29350 3 62338941 to 62339012 71 + TSS region transcription start site region 29350
Tssr29351 3 62339024 to 62339037 13 + TSS region transcription start site region 29351
Tssr29352 3 62339573 to 62339610 37 + TSS region transcription start site region 29352
Tssr29353 3 62340046 to 62340058 12 + TSS region transcription start site region 29353
Gm33923 3 62341390 to 62350523 9133 - lncRNA gene predicted gene, 33923
Tssr889 3 62396422 to 62396426 4 + TSS region transcription start site region 889
D3Mit361 3 62433165 to 62433296 131 DNA segment DNA Segment, Chr 3, Massachusetts Institute of Technology-361
Tssr29354 3 62435657 to 62435664 7 + TSS region transcription start site region 29354
Tssr29355 3 62444873 to 62444877 4 + TSS region transcription start site region 29355
Dhx36 3 62468013 to 62507004 38991 - protein coding gene DEAH (Asp-Glu-Ala-His) box polypeptide 36
Tssr33430 3 62480194 to 62480204 10 - TSS region transcription start site region 33430
Cpgi13215 3 62506488 to 62507222 734 CpG island CpG island 13215
Tssr33431 3 62506949 to 62506967 18 - TSS region transcription start site region 33431
Tssr33432 3 62506970 to 62507027 57 - TSS region transcription start site region 33432
Gpr149 3 62529430 to 62605442 76012 - protein coding gene G protein-coupled receptor 149
Cpgi13216 3 62603503 to 62604200 697 CpG island CpG island 13216
Gm34048 3 62604932 to 62763934 159002 + lncRNA gene predicted gene, 34048
Gm18382 3 62761443 to 62762024 581 + pseudogene predicted gene, 18382
Gm40062 3 62771982 to 62860635 88653 + lncRNA gene predicted gene, 40062
Gm40063 3 62867684 to 62889000 21316 + lncRNA gene predicted gene, 40063
Gm9701 3 62923807 to 62924233 426 - pseudogene predicted gene 9701
Tssr33433 3 62924257 to 62924266 9 - TSS region transcription start site region 33433
Gm22433 3 63152217 to 63152358 141 + snoRNA gene predicted gene, 22433
Gm8388 3 63173109 to 63173860 751 - pseudogene predicted gene 8388
Cpgi13217 3 63173784 to 63174069 285 CpG island CpG island 13217
Gm40064 3 63232817 to 63245447 12630 - lncRNA gene predicted gene, 40064
Tssr29356 3 63241468 to 63241469 1 + TSS region transcription start site region 29356
Tssr29357 3 63266815 to 63266819 4 + TSS region transcription start site region 29357
Mme 3 63295224 to 63383713 88489 + protein coding gene membrane metallo endopeptidase
Cpgi13218 3 63295374 to 63296250 876 CpG island CpG island 13218
Tssr29358 3 63295424 to 63295438 14 + TSS region transcription start site region 29358
Tssr29359 3 63295440 to 63295506 66 + TSS region transcription start site region 29359
Tssr29360 3 63295524 to 63295598 74 + TSS region transcription start site region 29360
Tssr29361 3 63295612 to 63295623 11 + TSS region transcription start site region 29361
Tssr29362 3 63295815 to 63295830 15 + TSS region transcription start site region 29362
Tssr29363 3 63295992 to 63296016 24 + TSS region transcription start site region 29363
Tssr29364 3 63296164 to 63296171 7 + TSS region transcription start site region 29364
Tssr29365 3 63296176 to 63296194 18 + TSS region transcription start site region 29365
Tssr29366 3 63296201 to 63296223 22 + TSS region transcription start site region 29366
Tssr29367 3 63298005 to 63298054 49 + TSS region transcription start site region 29367
Tssr890 3 63299731 to 63299742 11 + TSS region transcription start site region 890
Tssr29368 3 63299750 to 63299765 15 + TSS region transcription start site region 29368
Tssr29369 3 63331664 to 63331670 6 + TSS region transcription start site region 29369
Tssr29370 3 63345206 to 63345227 21 + TSS region transcription start site region 29370
Tssr29371 3 63361998 to 63362024 26 + TSS region transcription start site region 29371
Tssr29372 3 63380413 to 63380460 47 + TSS region transcription start site region 29372
Tssr29373 3 63381324 to 63381354 30 + TSS region transcription start site region 29373
Tssr29374 3 63382958 to 63382964 6 + TSS region transcription start site region 29374
Tssr29375 3 63439244 to 63439264 20 + TSS region transcription start site region 29375
Gm34240 3 63439251 to 63457897 18646 + lincRNA gene predicted gene, 34240
Strit1 3 63481112 to 63483879 2767 - lncRNA gene small transmembrane regulator of ion transport 1
Gm37279 3 63483884 to 63484369 485 + unclassified gene predicted gene, 37279
Gm24946 3 63488993 to 63489098 105 + snRNA gene predicted gene, 24946
Plch1 3 63696234 to 63899472 203238 - protein coding gene phospholipase C, eta 1
Gm23500 3 63770212 to 63770309 97 + snRNA gene predicted gene, 23500
Gm46807 3 63796100 to 63836853 40753 + lncRNA gene predicted gene, 46807
D3Mit228 3 63820506 to 63820655 149 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 228
Gm16162 3 63825794 to 63826444 650 + pseudogene predicted gene 16162
Gm16129 3 63843116 to 63844069 953 + pseudogene predicted gene 16129
Tssr33434 3 63851251 to 63851290 39 - TSS region transcription start site region 33434
Tssr33435 3 63854097 to 63854103 6 - TSS region transcription start site region 33435
Tssr33436 3 63862818 to 63862820 2 - TSS region transcription start site region 33436
Tssr33437 3 63865377 to 63865380 3 - TSS region transcription start site region 33437
Tssr33438 3 63891335 to 63891340 5 - TSS region transcription start site region 33438
Tssr33439 3 63893827 to 63893855 28 - TSS region transcription start site region 33439
Cpgi13219 3 63898643 to 63899255 612 CpG island CpG island 13219
Tssr33440 3 63899396 to 63899407 11 - TSS region transcription start site region 33440
Tssr33441 3 63899410 to 63899432 22 - TSS region transcription start site region 33441
Tssr33442 3 63899437 to 63899477 40 - TSS region transcription start site region 33442
Cpgi13220 3 63905319 to 63905557 238 CpG island CpG island 13220
Tssr891 3 63905327 to 63905334 7 + TSS region transcription start site region 891
Gm34379 3 63905429 to 63905718 289 + pseudogene predicted gene, 34379
E130311K13Rik 3 63914682 to 63929385 14703 - protein coding gene RIKEN cDNA E130311K13 gene
Cpgi13221 3 63928993 to 63929550 557 CpG island CpG island 13221
Tssr33443 3 63929376 to 63929413 37 - TSS region transcription start site region 33443
Slc33a1 3 63942323 to 63964733 22410 - protein coding gene solute carrier family 33 (acetyl-CoA transporter), member 1
Tssr29376 3 63963631 to 63963643 12 + TSS region transcription start site region 29376
Gm26850 3 63963633 to 63968659 5026 + antisense lncRNA gene predicted gene, 26850
Cpgi13222 3 63963945 to 63965028 1083 CpG island CpG island 13222
Tssr33444 3 63964534 to 63964549 15 - TSS region transcription start site region 33444
Tssr33445 3 63964557 to 63964570 13 - TSS region transcription start site region 33445
Tssr33446 3 63964571 to 63964604 33 - TSS region transcription start site region 33446
Tssr33447 3 63964606 to 63964624 18 - TSS region transcription start site region 33447
Tssr33448 3 63964659 to 63964666 7 - TSS region transcription start site region 33448
Tssr33449 3 63964774 to 63964785 11 - TSS region transcription start site region 33449
Tssr29377 3 63964789 to 63964830 41 + TSS region transcription start site region 29377
Tssr29378 3 63964831 to 63964841 10 + TSS region transcription start site region 29378
Cpgi13223 3 63975982 to 63976958 976 CpG island CpG island 13223
Gmps 3 63976106 to 64022579 46473 + protein coding gene guanine monophosphate synthetase
Tssr29379 3 63976109 to 63976135 26 + TSS region transcription start site region 29379
Tssr29380 3 63976137 to 63976211 74 + TSS region transcription start site region 29380
Tssr29381 3 63984214 to 63984238 24 + TSS region transcription start site region 29381
Tssr29382 3 64022786 to 64022788 2 + TSS region transcription start site region 29382
Tssr29383 3 64039299 to 64039300 1 + TSS region transcription start site region 29383
Vmn2r-ps3 3 64053031 to 64055610 2579 - pseudogene vomeronasal 2, receptor, pseudogene 3
Vmn2r1 3 64081547 to 64109484 27937 + protein coding gene vomeronasal 2, receptor 1
Gm22165 3 64109635 to 64109737 102 + snRNA gene predicted gene, 22165
Vmn2r2 3 64115278 to 64141928 26650 - protein coding gene vomeronasal 2, receptor 2