Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:60579028-62149056

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65 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Mbnl1 3 60472830 to 60629750 156920 + protein coding gene muscleblind like splicing factor 1
Tssr29311 3 60595588 to 60595604 16 + TSS region transcription start site region 29311
Tssr29312 3 60595630 to 60595657 27 + TSS region transcription start site region 29312
Tssr29313 3 60603735 to 60603751 16 + TSS region transcription start site region 29313
Tssr29314 3 60603753 to 60603766 13 + TSS region transcription start site region 29314
Gm37488 3 60604384 to 60607757 3373 + unclassified gene predicted gene, 37488
Tssr29315 3 60614421 to 60614434 13 + TSS region transcription start site region 29315
Tssr29316 3 60617094 to 60617116 22 + TSS region transcription start site region 29316
Tssr29317 3 60617314 to 60617337 23 + TSS region transcription start site region 29317
Tssr29318 3 60617380 to 60617403 23 + TSS region transcription start site region 29318
Tssr29319 3 60617439 to 60617472 33 + TSS region transcription start site region 29319
Tssr29320 3 60618195 to 60618204 9 + TSS region transcription start site region 29320
Tssr29321 3 60622151 to 60622169 18 + TSS region transcription start site region 29321
Tssr29322 3 60626570 to 60626601 31 + TSS region transcription start site region 29322
Tssr29323 3 60626733 to 60626746 13 + TSS region transcription start site region 29323
Tssr29324 3 60626785 to 60626819 34 + TSS region transcription start site region 29324
Tssr29325 3 60626909 to 60626927 18 + TSS region transcription start site region 29325
Tssr29326 3 60626964 to 60626993 29 + TSS region transcription start site region 29326
Tssr29327 3 60627866 to 60627993 127 + TSS region transcription start site region 29327
Tssr29328 3 60631690 to 60631712 22 + TSS region transcription start site region 29328
Gm38280 3 60737628 to 60737785 157 - pseudogene predicted gene, 38280
Gm33707 3 60769887 to 60770455 568 - pseudogene predicted gene, 33707
Gm38326 3 60788361 to 60794728 6367 + lincRNA gene predicted gene, 38326
Tssr29329 3 60806023 to 60806062 39 + TSS region transcription start site region 29329
Gm36985 3 60860707 to 60861085 378 + pseudogene predicted gene, 36985
Tssr29330 3 60877002 to 60877017 15 + TSS region transcription start site region 29330
Gm8325 3 60877014 to 60877587 573 + pseudogene predicted pseudogene 8325
Tssr33423 3 60963518 to 60963520 2 - TSS region transcription start site region 33423
Gm37035 3 61001639 to 61003786 2147 - antisense lncRNA gene predicted gene, 37035
Cpgi13211 3 61002205 to 61003871 1666 CpG island CpG island 13211
Tssr29331 3 61002778 to 61002783 5 + TSS region transcription start site region 29331
Tssr29332 3 61002786 to 61002811 25 + TSS region transcription start site region 29332
P2ry1 3 61002795 to 61008982 6187 + protein coding gene purinergic receptor P2Y, G-protein coupled 1
Gm37719 3 61291155 to 61291446 291 - pseudogene predicted gene, 37719
Gm19901 3 61328699 to 61329193 494 - pseudogene predicted gene, 19901
Gm37696 3 61358549 to 61361897 3348 - antisense lncRNA gene predicted gene, 37696
B430305J03Rik 3 61362250 to 61365951 3701 - unclassified gene RIKEN cDNA B430305J03 gene
Tssr33424 3 61363085 to 61363096 11 - TSS region transcription start site region 33424
Cpgi13212 3 61363089 to 61363427 338 CpG island CpG island 13212
Tssr33425 3 61363118 to 61363125 7 - TSS region transcription start site region 33425
Tssr33426 3 61363130 to 61363141 11 - TSS region transcription start site region 33426
Tssr29333 3 61363756 to 61363760 4 + TSS region transcription start site region 29333
Cpgi13213 3 61363850 to 61365876 2026 CpG island CpG island 13213
Tssr29334 3 61363894 to 61363907 13 + TSS region transcription start site region 29334
Tssr29335 3 61363912 to 61363948 36 + TSS region transcription start site region 29335
Tssr29336 3 61364028 to 61364056 28 + TSS region transcription start site region 29336
Tssr33427 3 61364362 to 61364410 48 - TSS region transcription start site region 33427
Rap2b 3 61364507 to 61368703 4196 + protein coding gene RAP2B, member of RAS oncogene family
Tssr29337 3 61364517 to 61364528 11 + TSS region transcription start site region 29337
Tssr29338 3 61364555 to 61364633 78 + TSS region transcription start site region 29338
Tssr29339 3 61364792 to 61364807 15 + TSS region transcription start site region 29339
Tssr33428 3 61365807 to 61365818 11 - TSS region transcription start site region 33428
Tssr29340 3 61366003 to 61366024 21 + TSS region transcription start site region 29340
Tssr29341 3 61366095 to 61366106 11 + TSS region transcription start site region 29341
Tssr29342 3 61366378 to 61366395 17 + TSS region transcription start site region 29342
Tssr29343 3 61366404 to 61366415 11 + TSS region transcription start site region 29343
Tssr29344 3 61366517 to 61366522 5 + TSS region transcription start site region 29344
Tssr29345 3 61367431 to 61367443 12 + TSS region transcription start site region 29345
Gm40061 3 61392147 to 61413034 20887 + lncRNA gene predicted gene, 40061
Tssr888 3 61409918 to 61409950 32 + TSS region transcription start site region 888
Tssr33429 3 61415991 to 61416005 14 - TSS region transcription start site region 33429
Gm8349 3 61461859 to 61462861 1002 - pseudogene predicted gene 8349
D3Mit1008 3 61883612 to 61883737 125 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 1008
Gm9700 3 62068309 to 62069514 1205 - pseudogene predicted gene 9700
Gm37404 3 62123207 to 62123565 358 + unclassified gene predicted gene, 37404