Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:59333440-60233604

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53 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Igsf10 3 59316735 to 59344394 27659 - protein coding gene immunoglobulin superfamily, member 10
Tssr33412 3 59343981 to 59343991 10 - TSS region transcription start site region 33412
Tssr33413 3 59344013 to 59344046 33 - TSS region transcription start site region 33413
Tssr33414 3 59344051 to 59344076 25 - TSS region transcription start site region 33414
Tssr33415 3 59344078 to 59344100 22 - TSS region transcription start site region 33415
Tssr33416 3 59344152 to 59344165 13 - TSS region transcription start site region 33416
Gm38186 3 59344271 to 59351167 6896 + antisense lncRNA gene predicted gene, 38186
Cpgi13208 3 59344299 to 59344510 211 CpG island CpG island 13208
Tssr33417 3 59344346 to 59344367 21 - TSS region transcription start site region 33417
Tssr33418 3 59344370 to 59344422 52 - TSS region transcription start site region 33418
Tssr33419 3 59344438 to 59344449 11 - TSS region transcription start site region 33419
Gm37715 3 59424530 to 59424764 234 + pseudogene predicted gene, 37715
Tssr29232 3 59431234 to 59431239 5 + TSS region transcription start site region 29232
Tssr29233 3 59431376 to 59431406 30 + TSS region transcription start site region 29233
Gm8276 3 59431546 to 59433345 1799 + pseudogene predicted gene 8276
Tssr29234 3 59432006 to 59432022 16 + TSS region transcription start site region 29234
Tssr29235 3 59432059 to 59432095 36 + TSS region transcription start site region 29235
Tssr29236 3 59432146 to 59432176 30 + TSS region transcription start site region 29236
Gm38288 3 59469671 to 59474095 4424 - pseudogene predicted gene, 38288
n-TVcac1 3 59474926 to 59474997 71 - tRNA gene nuclear encoded tRNA valine 1 (anticodon CAC)
Gm37771 3 59483024 to 59483288 264 + pseudogene predicted gene, 37771
Gm4856 3 59505581 to 59535226 29645 - pseudogene predicted gene 4856
Tssr29237 3 59533413 to 59533416 3 + TSS region transcription start site region 29237
Gm5709 3 59602455 to 59635733 33278 - pseudogene predicted gene 5709
Gm37926 3 59662858 to 59665281 2423 + unclassified gene predicted gene, 37926
Tssr29238 3 59729782 to 59729790 8 + TSS region transcription start site region 29238
Gm5538 3 59729790 to 59752333 22543 + protein coding gene predicted gene 5538
Gm38208 3 59736746 to 59736859 113 - pseudogene predicted gene, 38208
Gm37579 3 59737176 to 59737317 141 - pseudogene predicted gene, 37579
Gm5539 3 59767275 to 59768240 965 + pseudogene predicted gene 5539
4930449A18Rik 3 59777809 to 59846817 69008 + protein coding gene RIKEN cDNA 4930449A18 gene
Gm2756 3 59783289 to 59783688 399 - pseudogene predicted gene 2756
Cpgi13209 3 59783440 to 59783604 164 CpG island CpG island 13209
Tssr29239 3 59825711 to 59825722 11 + TSS region transcription start site region 29239
Gm16527 3 59838374 to 59846817 8443 + protein coding gene predicted gene, 16527
Gm8298 3 59861051 to 59877313 16262 + protein coding gene predicted gene 8298
Tssr29240 3 59898495 to 59898504 9 + TSS region transcription start site region 29240
C130079G13Rik 3 59925214 to 59937949 12735 + protein coding gene RIKEN cDNA C130079G13 gene
Tssr29241 3 59952135 to 59952167 32 + TSS region transcription start site region 29241
Tssr29242 3 59952185 to 59952200 15 + TSS region transcription start site region 29242
Gm9696 3 59952309 to 59973594 21285 + pseudogene predicted gene 9696
Aadacl2 3 60006743 to 60025420 18677 + protein coding gene arylacetamide deacetylase like 2
Tssr29243 3 60006862 to 60006879 17 + TSS region transcription start site region 29243
Gm18427 3 60020355 to 60020869 514 - pseudogene predicted gene, 18427
Tssr29244 3 60031754 to 60031771 17 + TSS region transcription start site region 29244
Tssr29245 3 60031773 to 60031802 29 + TSS region transcription start site region 29245
Aadac 3 60031788 to 60040157 8369 + protein coding gene arylacetamide deacetylase
Tssr29246 3 60031814 to 60031823 9 + TSS region transcription start site region 29246
Tssr29247 3 60081861 to 60081876 15 + TSS region transcription start site region 29247
Sucnr1 3 60081869 to 60087566 5697 + protein coding gene succinate receptor 1
Gm24382 3 60127641 to 60127747 106 - snRNA gene predicted gene, 24382
D3Mit7 3 60209895 to 60210041 146 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 7
D3Mit7.2 3 60210002 to 60210116 114 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 7.2