Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:58820681-62180705

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265 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr33371 3 58822369 to 58822376 7 - TSS region transcription start site region 33371
Tssr33372 3 58822389 to 58822393 4 - TSS region transcription start site region 33372
Gm40059 3 58824992 to 58835899 10907 + lncRNA gene predicted gene, 40059
Gm40060 3 58842095 to 58866754 24659 + lncRNA gene predicted gene, 40060
Clrn1 3 58844028 to 58885212 41184 - protein coding gene clarin 1
D3Nds33 3 58869174 to 58869362 188 DNA segment DNA segment, Chr 3, Nuffield Department of Surgery 33
Tssr33373 3 58885320 to 58885354 34 - TSS region transcription start site region 33373
Gm22491 3 58975630 to 58975731 101 + snRNA gene predicted gene, 22491
Gm25572 3 58978855 to 58979026 171 - snRNA gene predicted gene, 25572
Tssr29220 3 58987128 to 58987138 10 + TSS region transcription start site region 29220
Rpl13-ps6 3 58987170 to 58987805 635 + pseudogene ribosomal protein L13, pseudogene 6
Gm27793 3 59001620 to 59001695 75 + unclassified non-coding RNA gene predicted gene, 27793
Gm43570 3 59002471 to 59006158 3687 - antisense lncRNA gene predicted gene 43570
Cpgi13207 3 59005106 to 59007550 2444 CpG island CpG island 13207
Tssr29221 3 59005465 to 59005480 15 + TSS region transcription start site region 29221
Med12l 3 59005594 to 59318416 312822 + protein coding gene mediator complex subunit 12-like
Tssr29222 3 59005813 to 59005865 52 + TSS region transcription start site region 29222
Tssr29223 3 59005908 to 59005930 22 + TSS region transcription start site region 29223
Tssr29224 3 59080976 to 59080979 3 + TSS region transcription start site region 29224
Tssr29225 3 59081160 to 59081176 16 + TSS region transcription start site region 29225
Tssr29226 3 59091878 to 59091883 5 + TSS region transcription start site region 29226
Gpr171 3 59096448 to 59101821 5373 - protein coding gene G protein-coupled receptor 171
Tssr33374 3 59098376 to 59098382 6 - TSS region transcription start site region 33374
Tssr33375 3 59101735 to 59101746 11 - TSS region transcription start site region 33375
Tssr33376 3 59101761 to 59101777 16 - TSS region transcription start site region 33376
Tssr33377 3 59101810 to 59101826 16 - TSS region transcription start site region 33377
Tssr29227 3 59103563 to 59103581 18 + TSS region transcription start site region 29227
P2ry14 3 59114623 to 59153492 38869 - protein coding gene purinergic receptor P2Y, G-protein coupled, 14
Tssr33378 3 59115641 to 59115653 12 - TSS region transcription start site region 33378
Tssr33379 3 59116464 to 59116477 13 - TSS region transcription start site region 33379
Tssr33380 3 59122972 to 59122995 23 - TSS region transcription start site region 33380
Tssr33381 3 59130531 to 59130543 12 - TSS region transcription start site region 33381
Tssr33382 3 59130574 to 59130603 29 - TSS region transcription start site region 33382
Tssr33383 3 59130610 to 59130628 18 - TSS region transcription start site region 33383
Tssr33384 3 59130629 to 59130640 11 - TSS region transcription start site region 33384
Tssr33385 3 59130646 to 59130660 14 - TSS region transcription start site region 33385
Tssr33386 3 59130680 to 59130691 11 - TSS region transcription start site region 33386
Tssr33387 3 59130750 to 59130764 14 - TSS region transcription start site region 33387
Tssr33388 3 59131062 to 59131081 19 - TSS region transcription start site region 33388
Tssr33389 3 59131083 to 59131094 11 - TSS region transcription start site region 33389
Tssr33390 3 59131122 to 59131141 19 - TSS region transcription start site region 33390
Tssr33391 3 59131227 to 59131239 12 - TSS region transcription start site region 33391
Tssr29228 3 59131865 to 59131866 1 + TSS region transcription start site region 29228
Tssr29229 3 59132295 to 59132318 23 + TSS region transcription start site region 29229
Tssr33392 3 59142701 to 59142706 5 - TSS region transcription start site region 33392
Tssr33393 3 59146022 to 59146032 10 - TSS region transcription start site region 33393
F630111L10Rik 3 59146296 to 59153628 7332 - lncRNA gene RIKEN cDNA F630111L10 gene
Tssr33394 3 59153462 to 59153478 16 - TSS region transcription start site region 33394
Tssr33395 3 59153489 to 59153501 12 - TSS region transcription start site region 33395
Tssr33396 3 59153564 to 59153575 11 - TSS region transcription start site region 33396
Tssr33397 3 59153581 to 59153592 11 - TSS region transcription start site region 33397
Tssr33398 3 59153596 to 59153624 28 - TSS region transcription start site region 33398
Tssr33399 3 59153629 to 59153634 5 - TSS region transcription start site region 33399
Tssr33400 3 59153646 to 59153653 7 - TSS region transcription start site region 33400
Gpr87 3 59178923 to 59195104 16181 - protein coding gene G protein-coupled receptor 87
Tssr33401 3 59195031 to 59195054 23 - TSS region transcription start site region 33401
Tssr33402 3 59195095 to 59195110 15 - TSS region transcription start site region 33402
Tssr33403 3 59195123 to 59195137 14 - TSS region transcription start site region 33403
P2ry13 3 59207892 to 59210882 2990 - protein coding gene purinergic receptor P2Y, G-protein coupled 13
Tssr33404 3 59210848 to 59210855 7 - TSS region transcription start site region 33404
Tssr33405 3 59210863 to 59210868 5 - TSS region transcription start site region 33405
Tssr33406 3 59210881 to 59210883 2 - TSS region transcription start site region 33406
P2ry12 3 59216272 to 59262871 46599 - protein coding gene purinergic receptor P2Y, G-protein coupled 12
Tssr33407 3 59220000 to 59220011 11 - TSS region transcription start site region 33407
Tssr33408 3 59220091 to 59220116 25 - TSS region transcription start site region 33408
Tssr33409 3 59220150 to 59220201 51 - TSS region transcription start site region 33409
Tssr33410 3 59262825 to 59262851 26 - TSS region transcription start site region 33410
Tssr33411 3 59262963 to 59263008 45 - TSS region transcription start site region 33411
Gm43589 3 59269786 to 59271308 1522 + unclassified gene predicted gene 43589
Tssr29230 3 59304950 to 59304953 3 + TSS region transcription start site region 29230
Tssr29231 3 59312864 to 59312887 23 + TSS region transcription start site region 29231
Igsf10 3 59316735 to 59344394 27659 - protein coding gene immunoglobulin superfamily, member 10
Tssr33412 3 59343981 to 59343991 10 - TSS region transcription start site region 33412
Tssr33413 3 59344013 to 59344046 33 - TSS region transcription start site region 33413
Tssr33414 3 59344051 to 59344076 25 - TSS region transcription start site region 33414
Tssr33415 3 59344078 to 59344100 22 - TSS region transcription start site region 33415
Tssr33416 3 59344152 to 59344165 13 - TSS region transcription start site region 33416
Gm38186 3 59344271 to 59351167 6896 + antisense lncRNA gene predicted gene, 38186
Cpgi13208 3 59344299 to 59344510 211 CpG island CpG island 13208
Tssr33417 3 59344346 to 59344367 21 - TSS region transcription start site region 33417
Tssr33418 3 59344370 to 59344422 52 - TSS region transcription start site region 33418
Tssr33419 3 59344438 to 59344449 11 - TSS region transcription start site region 33419
Gm37715 3 59424530 to 59424764 234 + pseudogene predicted gene, 37715
Tssr29232 3 59431234 to 59431239 5 + TSS region transcription start site region 29232
Tssr29233 3 59431376 to 59431406 30 + TSS region transcription start site region 29233
Gm8276 3 59431546 to 59433345 1799 + pseudogene predicted gene 8276
Tssr29234 3 59432006 to 59432022 16 + TSS region transcription start site region 29234
Tssr29235 3 59432059 to 59432095 36 + TSS region transcription start site region 29235
Tssr29236 3 59432146 to 59432176 30 + TSS region transcription start site region 29236
Gm38288 3 59469671 to 59474095 4424 - pseudogene predicted gene, 38288
n-TVcac1 3 59474926 to 59474997 71 - tRNA gene nuclear encoded tRNA valine 1 (anticodon CAC)
Gm37771 3 59483024 to 59483288 264 + pseudogene predicted gene, 37771
Gm4856 3 59505581 to 59535226 29645 - pseudogene predicted gene 4856
Tssr29237 3 59533413 to 59533416 3 + TSS region transcription start site region 29237
Gm5709 3 59602455 to 59635733 33278 - pseudogene predicted gene 5709
Gm37926 3 59662858 to 59665281 2423 + unclassified gene predicted gene, 37926
Tssr29238 3 59729782 to 59729790 8 + TSS region transcription start site region 29238
Gm5538 3 59729790 to 59752333 22543 + protein coding gene predicted gene 5538
Gm38208 3 59736746 to 59736859 113 - pseudogene predicted gene, 38208
Gm37579 3 59737176 to 59737317 141 - pseudogene predicted gene, 37579
Gm5539 3 59767275 to 59768240 965 + pseudogene predicted gene 5539
4930449A18Rik 3 59777809 to 59846817 69008 + protein coding gene RIKEN cDNA 4930449A18 gene
Gm2756 3 59783289 to 59783688 399 - pseudogene predicted gene 2756
Cpgi13209 3 59783440 to 59783604 164 CpG island CpG island 13209
Tssr29239 3 59825711 to 59825722 11 + TSS region transcription start site region 29239
Gm16527 3 59838374 to 59846817 8443 + protein coding gene predicted gene, 16527
Gm8298 3 59861051 to 59877313 16262 + protein coding gene predicted gene 8298
Tssr29240 3 59898495 to 59898504 9 + TSS region transcription start site region 29240
C130079G13Rik 3 59925214 to 59937949 12735 + protein coding gene RIKEN cDNA C130079G13 gene
Tssr29241 3 59952135 to 59952167 32 + TSS region transcription start site region 29241
Tssr29242 3 59952185 to 59952200 15 + TSS region transcription start site region 29242
Gm9696 3 59952309 to 59973594 21285 + pseudogene predicted gene 9696
Aadacl2 3 60006743 to 60025420 18677 + protein coding gene arylacetamide deacetylase like 2
Tssr29243 3 60006862 to 60006879 17 + TSS region transcription start site region 29243
Gm18427 3 60020355 to 60020869 514 - pseudogene predicted gene, 18427
Tssr29244 3 60031754 to 60031771 17 + TSS region transcription start site region 29244
Tssr29245 3 60031773 to 60031802 29 + TSS region transcription start site region 29245
Aadac 3 60031788 to 60040157 8369 + protein coding gene arylacetamide deacetylase
Tssr29246 3 60031814 to 60031823 9 + TSS region transcription start site region 29246
Tssr29247 3 60081861 to 60081876 15 + TSS region transcription start site region 29247
Sucnr1 3 60081869 to 60087566 5697 + protein coding gene succinate receptor 1
Gm24382 3 60127641 to 60127747 106 - snRNA gene predicted gene, 24382
D3Mit7 3 60209895 to 60210041 146 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 7
D3Mit7.2 3 60210002 to 60210116 114 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 7.2
Gm33650 3 60293415 to 60309406 15991 - lncRNA gene predicted gene, 33650
Tssr33420 3 60320332 to 60320343 11 - TSS region transcription start site region 33420
Tgif1-ps 3 60342358 to 60343093 735 - pseudogene TGFB-induced factor homeobox 1, pseudogene
D3Nds1 3 60466705 to 60466879 174 DNA segment DNA segment, Chr 3, Nuffield Department of Surgery 1
Tssr29248 3 60472198 to 60472206 8 + TSS region transcription start site region 29248
Tssr29249 3 60472220 to 60472233 13 + TSS region transcription start site region 29249
Tssr29250 3 60472594 to 60472608 14 + TSS region transcription start site region 29250
Tssr29251 3 60472631 to 60472666 35 + TSS region transcription start site region 29251
Tssr29252 3 60472680 to 60472687 7 + TSS region transcription start site region 29252
Tssr29253 3 60472731 to 60472741 10 + TSS region transcription start site region 29253
Tssr29254 3 60472783 to 60472786 3 + TSS region transcription start site region 29254
Tssr29255 3 60472792 to 60472806 14 + TSS region transcription start site region 29255
Tssr29256 3 60472807 to 60472816 9 + TSS region transcription start site region 29256
Tssr29257 3 60472822 to 60472837 15 + TSS region transcription start site region 29257
Mbnl1 3 60472830 to 60629750 156920 + protein coding gene muscleblind like splicing factor 1
Tssr29258 3 60473062 to 60473083 21 + TSS region transcription start site region 29258
Tssr29259 3 60473098 to 60473128 30 + TSS region transcription start site region 29259
Tssr29260 3 60475409 to 60475431 22 + TSS region transcription start site region 29260
Tssr29261 3 60475929 to 60475950 21 + TSS region transcription start site region 29261
Tssr29262 3 60476018 to 60476050 32 + TSS region transcription start site region 29262
Tssr29263 3 60479836 to 60479847 11 + TSS region transcription start site region 29263
Tssr29264 3 60479878 to 60479885 7 + TSS region transcription start site region 29264
Tssr29265 3 60480535 to 60480557 22 + TSS region transcription start site region 29265
Tssr29266 3 60480581 to 60480598 17 + TSS region transcription start site region 29266
Tssr29267 3 60480797 to 60480808 11 + TSS region transcription start site region 29267
Tssr29268 3 60480848 to 60480871 23 + TSS region transcription start site region 29268
Tssr29269 3 60480953 to 60480965 12 + TSS region transcription start site region 29269
Tssr29270 3 60481001 to 60481024 23 + TSS region transcription start site region 29270
Tssr29271 3 60481094 to 60481136 42 + TSS region transcription start site region 29271
Tssr29272 3 60481138 to 60481273 135 + TSS region transcription start site region 29272
Tssr29273 3 60487439 to 60487454 15 + TSS region transcription start site region 29273
Tssr29274 3 60487712 to 60487731 19 + TSS region transcription start site region 29274
Tssr29275 3 60489335 to 60489346 11 + TSS region transcription start site region 29275
Tssr29276 3 60496211 to 60496259 48 + TSS region transcription start site region 29276
Tssr29277 3 60497890 to 60497929 39 + TSS region transcription start site region 29277
Tssr29278 3 60500681 to 60500705 24 + TSS region transcription start site region 29278
Cpgi13210 3 60500714 to 60501925 1211 CpG island CpG island 13210
Tssr29279 3 60500757 to 60500795 38 + TSS region transcription start site region 29279
Tssr29280 3 60501214 to 60501242 28 + TSS region transcription start site region 29280
Tssr29281 3 60501257 to 60501275 18 + TSS region transcription start site region 29281
Tssr29282 3 60501377 to 60501388 11 + TSS region transcription start site region 29282
Tssr33421 3 60501728 to 60501761 33 - TSS region transcription start site region 33421
Tssr33422 3 60501825 to 60501834 9 - TSS region transcription start site region 33422
Tssr887 3 60501861 to 60501880 19 + TSS region transcription start site region 887
Tssr29283 3 60501884 to 60501908 24 + TSS region transcription start site region 29283
Tssr29284 3 60501977 to 60502000 23 + TSS region transcription start site region 29284
Tssr29285 3 60502270 to 60502279 9 + TSS region transcription start site region 29285
Tssr29286 3 60505034 to 60505038 4 + TSS region transcription start site region 29286
Tssr29287 3 60508464 to 60508471 7 + TSS region transcription start site region 29287
Tssr29288 3 60513531 to 60513537 6 + TSS region transcription start site region 29288
Tssr29289 3 60516867 to 60516881 14 + TSS region transcription start site region 29289
Tssr29290 3 60516951 to 60516962 11 + TSS region transcription start site region 29290
Tssr29291 3 60517149 to 60517152 3 + TSS region transcription start site region 29291
Tssr29292 3 60524349 to 60524362 13 + TSS region transcription start site region 29292
Tssr29293 3 60525858 to 60525869 11 + TSS region transcription start site region 29293
Tssr29294 3 60528064 to 60528134 70 + TSS region transcription start site region 29294
Tssr29295 3 60528247 to 60528256 9 + TSS region transcription start site region 29295
Tssr29296 3 60528263 to 60528316 53 + TSS region transcription start site region 29296
Tssr29297 3 60528469 to 60528495 26 + TSS region transcription start site region 29297
Tssr29298 3 60528510 to 60528521 11 + TSS region transcription start site region 29298
Tssr29299 3 60528742 to 60528779 37 + TSS region transcription start site region 29299
Tssr29300 3 60529220 to 60529257 37 + TSS region transcription start site region 29300
Tssr29301 3 60529428 to 60529453 25 + TSS region transcription start site region 29301
Tssr29302 3 60529566 to 60529581 15 + TSS region transcription start site region 29302
Tssr29303 3 60529701 to 60529739 38 + TSS region transcription start site region 29303
Tssr29304 3 60530076 to 60530079 3 + TSS region transcription start site region 29304
Tssr29305 3 60530319 to 60530325 6 + TSS region transcription start site region 29305
Tssr29306 3 60531234 to 60531252 18 + TSS region transcription start site region 29306
Gm37589 3 60535751 to 60539744 3993 + unclassified gene predicted gene, 37589
Tssr29307 3 60546818 to 60546822 4 + TSS region transcription start site region 29307
Tssr29308 3 60560198 to 60560202 4 + TSS region transcription start site region 29308
Tssr29309 3 60567549 to 60567565 16 + TSS region transcription start site region 29309
Tssr29310 3 60575837 to 60575839 2 + TSS region transcription start site region 29310
Tssr29311 3 60595588 to 60595604 16 + TSS region transcription start site region 29311
Tssr29312 3 60595630 to 60595657 27 + TSS region transcription start site region 29312
Tssr29313 3 60603735 to 60603751 16 + TSS region transcription start site region 29313