Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.



Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:58592589-58888524

37 genes found.

Gene symbol	Chromo- some	Coordinates (bp, mm10)	Size (bp)	Strand	Feature Type	Gene name
Selenot	3	58576636 to 58593133	16497	+	protein coding gene	selenoprotein T
Tssr29216	3	58595715 to 58595719	4	+	TSS region	transcription start site region 29216
D3Mit173	3	58597713 to 58597833	120		DNA segment	DNA segment, Chr 3, Massachusetts Institute of Technology 173
Erich6	3	58616300 to 58637207	20907	-	protein coding gene	glutamate rich 6
Tssr33360	3	58621211 to 58621214	3	-	TSS region	transcription start site region 33360
Tssr33361	3	58622809 to 58622810	1	-	TSS region	transcription start site region 33361
Cpgi13203	3	58636482 to 58637266	784		CpG island	CpG island 13203
Gm46806	3	58636713 to 58637492	779	+	lncRNA gene	predicted gene, 46806
Tssr33362	3	58637174 to 58637179	5	-	TSS region	transcription start site region 33362
Tssr33363	3	58637184 to 58637198	14	-	TSS region	transcription start site region 33363
Tssr33364	3	58637201 to 58637221	20	-	TSS region	transcription start site region 33364
Gm8234	3	58652053 to 58653159	1106	+	pseudogene	predicted gene 8234
AU022133	3	58665470 to 58666566	1096	-	pseudogene	expressed sequence AU022133
Cpgi13204	3	58666418 to 58666638	220		CpG island	CpG island 13204
Siah2	3	58674938 to 58692400	17462	-	protein coding gene	siah E3 ubiquitin protein ligase 2
Tssr33365	3	58687110 to 58687114	4	-	TSS region	transcription start site region 33365
Cpgi13205	3	58690732 to 58690992	260		CpG island	CpG island 13205
Cpgi13206	3	58691254 to 58692918	1664		CpG island	CpG island 13206
Tssr33366	3	58692008 to 58692015	7	-	TSS region	transcription start site region 33366
Tssr33367	3	58692056 to 58692123	67	-	TSS region	transcription start site region 33367
Tssr33368	3	58692391 to 58692412	21	-	TSS region	transcription start site region 33368
Tssr33369	3	58692425 to 58692443	18	-	TSS region	transcription start site region 33369
Tssr29217	3	58692490 to 58692536	46	+	TSS region	transcription start site region 29217
4930593A02Rik	3	58692589 to 58788524	95935	+	lincRNA gene	RIKEN cDNA 4930593A02 gene
Tssr29218	3	58692611 to 58692623	12	+	TSS region	transcription start site region 29218
A930028O11Rik	3	58697561 to 58698668	1107	+	unclassified gene	RIKEN cDNA A930028O11 gene
Tssr29219	3	58715505 to 58715508	3	+	TSS region	transcription start site region 29219
Gm33092	3	58761492 to 58762747	1255	-	pseudogene	predicted gene, 33092
Mindy4b-ps	3	58790117 to 58811938	21821	-	pseudogene	MINDY lysine 48 deubiquitinase 4B, pseudogene
Tssr33370	3	58810552 to 58810570	18	-	TSS region	transcription start site region 33370
Tssr33371	3	58822369 to 58822376	7	-	TSS region	transcription start site region 33371
Tssr33372	3	58822389 to 58822393	4	-	TSS region	transcription start site region 33372
Gm40059	3	58824992 to 58835899	10907	+	lncRNA gene	predicted gene, 40059
Gm40060	3	58842095 to 58866754	24659	+	lncRNA gene	predicted gene, 40060
Clrn1	3	58844028 to 58885212	41184	-	protein coding gene	clarin 1
D3Nds33	3	58869174 to 58869362	188		DNA segment	DNA segment, Chr 3, Nuffield Department of Surgery 33
Tssr33373	3	58885320 to 58885354	34	-	TSS region	transcription start site region 33373