Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:58372892-60045882

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189 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm20128 3 58404701 to 58405117 416 + pseudogene predicted gene, 20128
Cpgi13200 3 58414323 to 58417364 3041 CpG island CpG island 13200
Tssr29198 3 58414698 to 58414739 41 + TSS region transcription start site region 29198
Tssr29199 3 58414741 to 58414771 30 + TSS region transcription start site region 29199
Tssr29200 3 58414778 to 58414794 16 + TSS region transcription start site region 29200
Tssr29201 3 58414813 to 58414829 16 + TSS region transcription start site region 29201
Tssr29202 3 58415316 to 58415324 8 + TSS region transcription start site region 29202
Tsc22d2 3 58415536 to 58466787 51251 + protein coding gene TSC22 domain family, member 2
Gdap9 3 58432681 to 58433014 333 unclassified gene ganglioside-induced differentiation-associated-protein 9
Tssr29203 3 58461116 to 58461120 4 + TSS region transcription start site region 29203
Tssr29204 3 58502180 to 58502185 5 + TSS region transcription start site region 29204
Tssr29205 3 58517488 to 58517501 13 + TSS region transcription start site region 29205
Tssr29206 3 58517537 to 58517546 9 + TSS region transcription start site region 29206
Serp1 3 58521969 to 58525884 3915 - protein coding gene stress-associated endoplasmic reticulum protein 1
Tssr33348 3 58522393 to 58522429 36 - TSS region transcription start site region 33348
Cpgi13201 3 58525052 to 58526272 1220 CpG island CpG island 13201
Tssr33349 3 58525113 to 58525160 47 - TSS region transcription start site region 33349
Tssr29207 3 58525113 to 58525128 15 + TSS region transcription start site region 29207
Tssr33350 3 58525717 to 58525728 11 - TSS region transcription start site region 33350
Tssr886 3 58525732 to 58525737 5 - TSS region transcription start site region 886
Tssr33351 3 58525742 to 58525761 19 - TSS region transcription start site region 33351
Tssr33352 3 58525768 to 58525788 20 - TSS region transcription start site region 33352
Tssr29208 3 58525815 to 58525844 29 + TSS region transcription start site region 29208
Eif2a 3 58525821 to 58557501 31680 + protein coding gene eukaryotic translation initiation factor 2A
Tssr33353 3 58525867 to 58525872 5 - TSS region transcription start site region 33353
Tssr33354 3 58525893 to 58525897 4 - TSS region transcription start site region 33354
Tssr29209 3 58526008 to 58526010 2 + TSS region transcription start site region 29209
Tssr29210 3 58526033 to 58526061 28 + TSS region transcription start site region 29210
6720482G16Rik 3 58526930 to 58528121 1191 + unclassified gene RIKEN cDNA 6720482G16 gene
Tssr29211 3 58539551 to 58539566 15 + TSS region transcription start site region 29211
Tssr29212 3 58548893 to 58548912 19 + TSS region transcription start site region 29212
Cpgi13202 3 58576491 to 58577508 1017 CpG island CpG island 13202
Tssr33355 3 58576552 to 58576582 30 - TSS region transcription start site region 33355
Selenot 3 58576636 to 58593133 16497 + protein coding gene selenoprotein T
Tssr29213 3 58576652 to 58576717 65 + TSS region transcription start site region 29213
Tssr29214 3 58576724 to 58576736 12 + TSS region transcription start site region 29214
Tssr33356 3 58577272 to 58577285 13 - TSS region transcription start site region 33356
Tssr33357 3 58577377 to 58577420 43 - TSS region transcription start site region 33357
Tssr33358 3 58577698 to 58577726 28 - TSS region transcription start site region 33358
Tssr33359 3 58577729 to 58577739 10 - TSS region transcription start site region 33359
Tssr29215 3 58591297 to 58591316 19 + TSS region transcription start site region 29215
Tssr29216 3 58595715 to 58595719 4 + TSS region transcription start site region 29216
D3Mit173 3 58597713 to 58597833 120 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 173
Erich6 3 58616300 to 58637207 20907 - protein coding gene glutamate rich 6
Tssr33360 3 58621211 to 58621214 3 - TSS region transcription start site region 33360
Tssr33361 3 58622809 to 58622810 1 - TSS region transcription start site region 33361
Cpgi13203 3 58636482 to 58637266 784 CpG island CpG island 13203
Gm46806 3 58636713 to 58637492 779 + lncRNA gene predicted gene, 46806
Tssr33362 3 58637174 to 58637179 5 - TSS region transcription start site region 33362
Tssr33363 3 58637184 to 58637198 14 - TSS region transcription start site region 33363
Tssr33364 3 58637201 to 58637221 20 - TSS region transcription start site region 33364
Gm8234 3 58652053 to 58653159 1106 + pseudogene predicted gene 8234
AU022133 3 58665470 to 58666566 1096 - pseudogene expressed sequence AU022133
Cpgi13204 3 58666418 to 58666638 220 CpG island CpG island 13204
Siah2 3 58674938 to 58692400 17462 - protein coding gene siah E3 ubiquitin protein ligase 2
Tssr33365 3 58687110 to 58687114 4 - TSS region transcription start site region 33365
Cpgi13205 3 58690732 to 58690992 260 CpG island CpG island 13205
Cpgi13206 3 58691254 to 58692918 1664 CpG island CpG island 13206
Tssr33366 3 58692008 to 58692015 7 - TSS region transcription start site region 33366
Tssr33367 3 58692056 to 58692123 67 - TSS region transcription start site region 33367
Tssr33368 3 58692391 to 58692412 21 - TSS region transcription start site region 33368
Tssr33369 3 58692425 to 58692443 18 - TSS region transcription start site region 33369
Tssr29217 3 58692490 to 58692536 46 + TSS region transcription start site region 29217
4930593A02Rik 3 58692589 to 58788524 95935 + lincRNA gene RIKEN cDNA 4930593A02 gene
Tssr29218 3 58692611 to 58692623 12 + TSS region transcription start site region 29218
A930028O11Rik 3 58697561 to 58698668 1107 + unclassified gene RIKEN cDNA A930028O11 gene
Tssr29219 3 58715505 to 58715508 3 + TSS region transcription start site region 29219
Gm33092 3 58761492 to 58762747 1255 - pseudogene predicted gene, 33092
Mindy4b-ps 3 58790117 to 58811938 21821 - pseudogene MINDY lysine 48 deubiquitinase 4B, pseudogene
Tssr33370 3 58810552 to 58810570 18 - TSS region transcription start site region 33370
Tssr33371 3 58822369 to 58822376 7 - TSS region transcription start site region 33371
Tssr33372 3 58822389 to 58822393 4 - TSS region transcription start site region 33372
Gm40059 3 58824992 to 58835899 10907 + lncRNA gene predicted gene, 40059
Gm40060 3 58842095 to 58866754 24659 + lncRNA gene predicted gene, 40060
Clrn1 3 58844028 to 58885212 41184 - protein coding gene clarin 1
D3Nds33 3 58869174 to 58869362 188 DNA segment DNA segment, Chr 3, Nuffield Department of Surgery 33
Tssr33373 3 58885320 to 58885354 34 - TSS region transcription start site region 33373
Gm22491 3 58975630 to 58975731 101 + snRNA gene predicted gene, 22491
Gm25572 3 58978855 to 58979026 171 - snRNA gene predicted gene, 25572
Tssr29220 3 58987128 to 58987138 10 + TSS region transcription start site region 29220
Rpl13-ps6 3 58987170 to 58987805 635 + pseudogene ribosomal protein L13, pseudogene 6
Gm27793 3 59001620 to 59001695 75 + unclassified non-coding RNA gene predicted gene, 27793
Gm43570 3 59002471 to 59006158 3687 - antisense lncRNA gene predicted gene 43570
Cpgi13207 3 59005106 to 59007550 2444 CpG island CpG island 13207
Tssr29221 3 59005465 to 59005480 15 + TSS region transcription start site region 29221
Med12l 3 59005594 to 59318416 312822 + protein coding gene mediator complex subunit 12-like
Tssr29222 3 59005813 to 59005865 52 + TSS region transcription start site region 29222
Tssr29223 3 59005908 to 59005930 22 + TSS region transcription start site region 29223
Tssr29224 3 59080976 to 59080979 3 + TSS region transcription start site region 29224
Tssr29225 3 59081160 to 59081176 16 + TSS region transcription start site region 29225
Tssr29226 3 59091878 to 59091883 5 + TSS region transcription start site region 29226
Gpr171 3 59096448 to 59101821 5373 - protein coding gene G protein-coupled receptor 171
Tssr33374 3 59098376 to 59098382 6 - TSS region transcription start site region 33374
Tssr33375 3 59101735 to 59101746 11 - TSS region transcription start site region 33375
Tssr33376 3 59101761 to 59101777 16 - TSS region transcription start site region 33376
Tssr33377 3 59101810 to 59101826 16 - TSS region transcription start site region 33377
Tssr29227 3 59103563 to 59103581 18 + TSS region transcription start site region 29227
P2ry14 3 59114623 to 59153492 38869 - protein coding gene purinergic receptor P2Y, G-protein coupled, 14
Tssr33378 3 59115641 to 59115653 12 - TSS region transcription start site region 33378
Tssr33379 3 59116464 to 59116477 13 - TSS region transcription start site region 33379
Tssr33380 3 59122972 to 59122995 23 - TSS region transcription start site region 33380
Tssr33381 3 59130531 to 59130543 12 - TSS region transcription start site region 33381
Tssr33382 3 59130574 to 59130603 29 - TSS region transcription start site region 33382
Tssr33383 3 59130610 to 59130628 18 - TSS region transcription start site region 33383
Tssr33384 3 59130629 to 59130640 11 - TSS region transcription start site region 33384
Tssr33385 3 59130646 to 59130660 14 - TSS region transcription start site region 33385
Tssr33386 3 59130680 to 59130691 11 - TSS region transcription start site region 33386
Tssr33387 3 59130750 to 59130764 14 - TSS region transcription start site region 33387
Tssr33388 3 59131062 to 59131081 19 - TSS region transcription start site region 33388
Tssr33389 3 59131083 to 59131094 11 - TSS region transcription start site region 33389
Tssr33390 3 59131122 to 59131141 19 - TSS region transcription start site region 33390
Tssr33391 3 59131227 to 59131239 12 - TSS region transcription start site region 33391
Tssr29228 3 59131865 to 59131866 1 + TSS region transcription start site region 29228
Tssr29229 3 59132295 to 59132318 23 + TSS region transcription start site region 29229
Tssr33392 3 59142701 to 59142706 5 - TSS region transcription start site region 33392
Tssr33393 3 59146022 to 59146032 10 - TSS region transcription start site region 33393
F630111L10Rik 3 59146296 to 59153628 7332 - lncRNA gene RIKEN cDNA F630111L10 gene
Tssr33394 3 59153462 to 59153478 16 - TSS region transcription start site region 33394
Tssr33395 3 59153489 to 59153501 12 - TSS region transcription start site region 33395
Tssr33396 3 59153564 to 59153575 11 - TSS region transcription start site region 33396
Tssr33397 3 59153581 to 59153592 11 - TSS region transcription start site region 33397
Tssr33398 3 59153596 to 59153624 28 - TSS region transcription start site region 33398
Tssr33399 3 59153629 to 59153634 5 - TSS region transcription start site region 33399
Tssr33400 3 59153646 to 59153653 7 - TSS region transcription start site region 33400
Gpr87 3 59178923 to 59195104 16181 - protein coding gene G protein-coupled receptor 87
Tssr33401 3 59195031 to 59195054 23 - TSS region transcription start site region 33401
Tssr33402 3 59195095 to 59195110 15 - TSS region transcription start site region 33402
Tssr33403 3 59195123 to 59195137 14 - TSS region transcription start site region 33403
P2ry13 3 59207892 to 59210882 2990 - protein coding gene purinergic receptor P2Y, G-protein coupled 13
Tssr33404 3 59210848 to 59210855 7 - TSS region transcription start site region 33404
Tssr33405 3 59210863 to 59210868 5 - TSS region transcription start site region 33405
Tssr33406 3 59210881 to 59210883 2 - TSS region transcription start site region 33406
P2ry12 3 59216272 to 59262871 46599 - protein coding gene purinergic receptor P2Y, G-protein coupled 12
Tssr33407 3 59220000 to 59220011 11 - TSS region transcription start site region 33407
Tssr33408 3 59220091 to 59220116 25 - TSS region transcription start site region 33408
Tssr33409 3 59220150 to 59220201 51 - TSS region transcription start site region 33409
Tssr33410 3 59262825 to 59262851 26 - TSS region transcription start site region 33410
Tssr33411 3 59262963 to 59263008 45 - TSS region transcription start site region 33411
Gm43589 3 59269786 to 59271308 1522 + unclassified gene predicted gene 43589
Tssr29230 3 59304950 to 59304953 3 + TSS region transcription start site region 29230
Tssr29231 3 59312864 to 59312887 23 + TSS region transcription start site region 29231
Igsf10 3 59316735 to 59344394 27659 - protein coding gene immunoglobulin superfamily, member 10
Tssr33412 3 59343981 to 59343991 10 - TSS region transcription start site region 33412
Tssr33413 3 59344013 to 59344046 33 - TSS region transcription start site region 33413
Tssr33414 3 59344051 to 59344076 25 - TSS region transcription start site region 33414
Tssr33415 3 59344078 to 59344100 22 - TSS region transcription start site region 33415
Tssr33416 3 59344152 to 59344165 13 - TSS region transcription start site region 33416
Gm38186 3 59344271 to 59351167 6896 + antisense lncRNA gene predicted gene, 38186
Cpgi13208 3 59344299 to 59344510 211 CpG island CpG island 13208
Tssr33417 3 59344346 to 59344367 21 - TSS region transcription start site region 33417
Tssr33418 3 59344370 to 59344422 52 - TSS region transcription start site region 33418
Tssr33419 3 59344438 to 59344449 11 - TSS region transcription start site region 33419
Gm37715 3 59424530 to 59424764 234 + pseudogene predicted gene, 37715
Tssr29232 3 59431234 to 59431239 5 + TSS region transcription start site region 29232
Tssr29233 3 59431376 to 59431406 30 + TSS region transcription start site region 29233
Gm8276 3 59431546 to 59433345 1799 + pseudogene predicted gene 8276
Tssr29234 3 59432006 to 59432022 16 + TSS region transcription start site region 29234
Tssr29235 3 59432059 to 59432095 36 + TSS region transcription start site region 29235
Tssr29236 3 59432146 to 59432176 30 + TSS region transcription start site region 29236
Gm38288 3 59469671 to 59474095 4424 - pseudogene predicted gene, 38288
n-TVcac1 3 59474926 to 59474997 71 - tRNA gene nuclear encoded tRNA valine 1 (anticodon CAC)
Gm37771 3 59483024 to 59483288 264 + pseudogene predicted gene, 37771
Gm4856 3 59505581 to 59535226 29645 - pseudogene predicted gene 4856
Tssr29237 3 59533413 to 59533416 3 + TSS region transcription start site region 29237
Gm5709 3 59602455 to 59635733 33278 - pseudogene predicted gene 5709
Gm37926 3 59662858 to 59665281 2423 + unclassified gene predicted gene, 37926
Tssr29238 3 59729782 to 59729790 8 + TSS region transcription start site region 29238
Gm5538 3 59729790 to 59752333 22543 + protein coding gene predicted gene 5538
Gm38208 3 59736746 to 59736859 113 - pseudogene predicted gene, 38208
Gm37579 3 59737176 to 59737317 141 - pseudogene predicted gene, 37579
Gm5539 3 59767275 to 59768240 965 + pseudogene predicted gene 5539
4930449A18Rik 3 59777809 to 59846817 69008 + protein coding gene RIKEN cDNA 4930449A18 gene
Gm2756 3 59783289 to 59783688 399 - pseudogene predicted gene 2756
Cpgi13209 3 59783440 to 59783604 164 CpG island CpG island 13209
Tssr29239 3 59825711 to 59825722 11 + TSS region transcription start site region 29239
Gm16527 3 59838374 to 59846817 8443 + protein coding gene predicted gene, 16527
Gm8298 3 59861051 to 59877313 16262 + protein coding gene predicted gene 8298
Tssr29240 3 59898495 to 59898504 9 + TSS region transcription start site region 29240
C130079G13Rik 3 59925214 to 59937949 12735 + protein coding gene RIKEN cDNA C130079G13 gene
Tssr29241 3 59952135 to 59952167 32 + TSS region transcription start site region 29241
Tssr29242 3 59952185 to 59952200 15 + TSS region transcription start site region 29242
Gm9696 3 59952309 to 59973594 21285 + pseudogene predicted gene 9696
Aadacl2 3 60006743 to 60025420 18677 + protein coding gene arylacetamide deacetylase like 2
Tssr29243 3 60006862 to 60006879 17 + TSS region transcription start site region 29243
Gm18427 3 60020355 to 60020869 514 - pseudogene predicted gene, 18427
Tssr29244 3 60031754 to 60031771 17 + TSS region transcription start site region 29244
Tssr29245 3 60031773 to 60031802 29 + TSS region transcription start site region 29245
Aadac 3 60031788 to 60040157 8369 + protein coding gene arylacetamide deacetylase
Tssr29246 3 60031814 to 60031823 9 + TSS region transcription start site region 29246